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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4801 1syd:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8172877
    4802 1syf:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8172877
    4803 1sz8:A (1.5) BS01 CA 3.1.1.4 GO:0004623 ... P60045 N/A
    4804 1szb:A (2.5) BS01 CA 3.4.21.104 GO:0005509 ... O00187 15117939
    4805 1szb:A (2.5) BS02 CA 3.4.21.104 GO:0005509 ... O00187 15117939
    4806 1szb:B (2.5) BS01 CA 3.4.21.104 GO:0005509 ... O00187 15117939
    4807 1szb:B (2.5) BS02 CA 3.4.21.104 GO:0005509 ... O00187 15117939
    4808 1t0i:A (2.0) BS01 CA 1.5.1.39 GO:0003955 ... Q07923 15184374
    4809 1t0l:A (2.41) BS01 CA 1.1.1.42 GO:0000287 ... O75874 15173171
    4810 1t0l:B (2.41) BS01 CA 1.1.1.42 GO:0000287 ... O75874 15173171
    4811 1t0l:C (2.41) BS01 CA 1.1.1.42 GO:0000287 ... O75874 15173171
    4812 1t0l:D (2.41) BS02 CA 1.1.1.42 GO:0000287 ... O75874 15173171
    4813 1t1e:A (1.18) BS01 CA ? GO:0004175 ... Q8RR56 15242607
    4814 1t1g:A (1.18) BS01 CA ? GO:0004252 ... Q8RR56 15242607
    4815 1t1i:A (1.28) BS01 CA ? GO:0004252 ... Q8RR56 15242607
    4816 1t44:G (2.0) BS01 CA ? GO:0003785 ... P06396 15329672
    4817 1t44:G (2.0) BS02 CA ? GO:0003785 ... P06396 15329672
    4818 1t5d:X (2.206) BS01 CA 6.2.1.33 GO:0000166 ... Q8GN86 15236575
    4819 1t5h:X (2.002) BS01 CA 6.2.1.33 GO:0000166 ... Q8GN86 15236575
    4820 1t5s:A (2.6) BS01 CA 7.2.2.10 GO:0000166 ... P04191 15192230
    4821 1t5s:A (2.6) BS02 CA 7.2.2.10 GO:0000166 ... P04191 15192230
    4822 1t5t:A (2.9) BS02 CA 7.2.2.10 GO:0000166 ... P04191 15192230
    4823 1t5t:A (2.9) BS03 CA 7.2.2.10 GO:0000166 ... P04191 15192230
    4824 1t61:C (1.5) BS01 CA ? GO:0005201 ... Q7SIB3 15299013
    4825 1t61:F (1.5) BS01 CA ? GO:0005201 ... Q7SIB3 15299013
    4826 1t6b:X (2.5) BS01 CA ? GO:0005515 ... P13423 15243628
    4827 1t6b:X (2.5) BS02 CA ? GO:0005515 ... P13423 15243628
    4828 1t6c:A (1.53) BS01 CA '3.6.1.11
    3.6.1.40'
    GO:0016462 ... O67040 15248747
    4829 1t6m:A (2.107) BS01 CA 4.6.1.13 GO:0004436 ... P08954 16042375
    4830 1t6m:A (2.107) BS02 CA 4.6.1.13 GO:0004436 ... P08954 16042375
    4831 1t6m:B (2.107) BS01 CA 4.6.1.13 GO:0004436 ... P08954 16042375
    4832 1t6m:B (2.107) BS02 CA 4.6.1.13 GO:0004436 ... P08954 16042375
    4833 1t6w:A (-1.00) BS01 CA ? N/A P08921 15713084
    4834 1t9h:A (1.6) BS02 CA 3.6.1.- GO:0003924 ... O34530 15223319
    4835 1tad:A (1.7) BS01 CA ? GO:0000035 ... P04695 7969474
    4836 1tad:B (1.7) BS01 CA ? GO:0000035 ... P04695 7969474
    4837 1tad:C (1.7) BS01 CA ? GO:0000035 ... P04695 7969474
    4838 1tah:A (3.0) BS01 CA 3.1.1.3 GO:0004806 ... P0DUB8 8405390
    4839 1tah:B (3.0) BS01 CA 3.1.1.3 GO:0004806 ... P0DUB8 8405390
    4840 1tah:C (3.0) BS01 CA 3.1.1.3 GO:0004806 ... P0DUB8 8405390
    4841 1tah:D (3.0) BS01 CA 3.1.1.3 GO:0004806 ... P0DUB8 8405390
    4842 1taw:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9300481
    4843 1tcf:A (1.9) BS01 CA ? GO:0005509 ... P02586 10651267
    4844 1tcf:A (1.9) BS02 CA ? GO:0005509 ... P02586 10651267
    4845 1tcf:A (1.9) BS03 CA ? GO:0005509 ... P02586 10651267
    4846 1tcf:A (1.9) BS04 CA ? GO:0005509 ... P02586 10651267
    4847 1tcm:A (2.2) BS01 CA 2.4.1.19 GO:0003824 ... P43379 8955113
    4848 1tcm:A (2.2) BS02 CA 2.4.1.19 GO:0003824 ... P43379 8955113
    4849 1tcm:B (2.2) BS01 CA 2.4.1.19 GO:0003824 ... P43379 8955113
    4850 1tcm:B (2.2) BS02 CA 2.4.1.19 GO:0003824 ... P43379 8955113
    4851 1tco:B (2.5) BS01 CA 3.1.3.16 GO:0005509 ... P63099 7543369
    4852 1tco:B (2.5) BS02 CA 3.1.3.16 GO:0005509 ... P63099 7543369
    4853 1tco:B (2.5) BS03 CA 3.1.3.16 GO:0005509 ... P63099 7543369
    4854 1tco:B (2.5) BS04 CA 3.1.3.16 GO:0005509 ... P63099 7543369
    4855 1td7:A (2.5) BS01 CA 3.1.1.4 GO:0004623 ... P60045 16301791
    4856 1tdq:B (2.6) BS01 CA ? N/A P07897 15296743
    4857 1tdq:B (2.6) BS02 CA ? N/A P07897 15296743
    4858 1tdq:B (2.6) BS03 CA ? N/A P07897 15296743
    4859 1te2:A (1.76) BS02 CA 3.1.3.22
    3.1.3.23
    3.1.3.50
    3.1.3.68
    GO:0000287 ... P77247 N/A
    4860 1te2:B (1.76) BS02 CA 3.1.3.22
    3.1.3.23
    3.1.3.50
    3.1.3.68
    GO:0000287 ... P77247 N/A
    4861 1te2:B (1.76) BS03 CA 3.1.3.22
    3.1.3.23
    3.1.3.50
    3.1.3.68
    GO:0000287 ... P77247 N/A
    4862 1tec:E (2.2) BS01 CA 3.4.21.66 GO:0004252 ... P04072 2688688
    4863 1tec:E (2.2) BS02 CA 3.4.21.66 GO:0004252 ... P04072 2688688
    4864 1tei:A (2.7) BS04 CA ? GO:0030246 ... P02866 9451027
    4865 1tei:B (2.7) BS05 CA ? GO:0030246 ... P02866 9451027
    4866 1tei:C (2.7) BS05 CA ? GO:0030246 ... P02866 9451027
    4867 1tei:D (2.7) BS05 CA ? GO:0030246 ... P02866 9451027
    4868 1tei:E (2.7) BS05 CA ? GO:0030246 ... P02866 9451027
    4869 1tei:F (2.7) BS05 CA ? GO:0030246 ... P02866 9451027
    4870 1tei:G (2.7) BS04 CA ? GO:0030246 ... P02866 9451027
    4871 1tei:H (2.7) BS04 CA ? GO:0030246 ... P02866 9451027
    4872 1tf4:A (1.9) BS01 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    4873 1tf4:A (1.9) BS02 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    4874 1tf4:B (1.9) BS01 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    4875 1tf4:B (1.9) BS02 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    4876 1tf8:A (1.3) BS03 CA 3.4.11.24 GO:0004177 ... P80561 15388919
    4877 1tf9:A (1.3) BS03 CA 3.4.11.24 GO:0004177 ... P80561 15388919
    4878 1tfx:A (2.6) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9199408
    4879 1tfx:B (2.6) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9199408
    4880 1tgb:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 864704
    4881 1tgc:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    4882 1tgm:A (1.86) BS02 CA 3.1.1.4 GO:0004623 ... P59071 N/A
    4883 1tgs:Z (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7169635
    4884 1tgt:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    4885 1thl:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 8286362
    4886 1thl:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 8286362
    4887 1thl:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 8286362
    4888 1thl:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 8286362
    4889 1thm:A (1.37) BS01 CA 3.4.21.66 GO:0004252 ... P04072 2196375
    4890 1thm:A (1.37) BS02 CA 3.4.21.66 GO:0004252 ... P04072 2196375
    4891 1tio:A (1.93) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9920392
    4892 1tjx:A (1.04) BS01 CA ? GO:0016020 ... P21707 15340165
    4893 1tjx:A (1.04) BS02 CA ? GO:0016020 ... P21707 15340165
    4894 1tk2:A (1.54) BS02 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    4895 1tk2:A (1.54) BS03 CA 3.4.21.62 GO:0004252 ... P29600 N/A
    4896 1tka:A (2.7) BS01 CA 2.2.1.1 GO:0003824 ... P23254 8144674
    4897 1tka:B (2.7) BS02 CA 2.2.1.1 GO:0003824 ... P23254 8144674
    4898 1tkb:A (2.3) BS01 CA 2.2.1.1 GO:0003824 ... P23254 8144674
    4899 1tkb:B (2.3) BS02 CA 2.2.1.1 GO:0003824 ... P23254 8144674
    4900 1tkc:A (2.7) BS01 CA 2.2.1.1 GO:0003824 ... P23254 8144674
    4901 1tkc:B (2.7) BS02 CA 2.2.1.1 GO:0003824 ... P23254 8144674
    4902 1tkf:A (1.2) BS03 CA 3.4.11.24 GO:0004177 ... P80561 N/A
    4903 1tkh:A (1.25) BS03 CA 3.4.11.24 GO:0004177 ... P80561 N/A
    4904 1tkj:A (1.15) BS03 CA 3.4.11.24 GO:0004177 ... P80561 N/A
    4905 1tl9:A (1.8) BS02 CA 3.4.22.52 GO:0004198 ... P97571 15491615
    4906 1tl9:A (1.8) BS03 CA 3.4.22.52 GO:0004198 ... P97571 15491615
    4907 1tld:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 2614845
    4908 1tlg:A (2.2) BS02 CA ? GO:0030246 ... P16108 10398588
    4909 1tlg:B (2.2) BS02 CA ? GO:0030246 ... P16108 10398588
    4910 1tli:A (2.05) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    4911 1tli:A (2.05) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    4912 1tli:A (2.05) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    4913 1tli:A (2.05) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    4914 1tlo:A (1.9) BS01 CA 3.4.22.52 GO:0004198 ... P97571 15491615
    4915 1tlo:A (1.9) BS02 CA 3.4.22.52 GO:0004198 ... P97571 15491615
    4916 1tlp:E (2.3) BS02 CA 3.4.24.27 GO:0004222 ... P00800 3709536
    4917 1tlp:E (2.3) BS03 CA 3.4.24.27 GO:0004222 ... P00800 3709536
    4918 1tlp:E (2.3) BS04 CA 3.4.24.27 GO:0004222 ... P00800 3709536
    4919 1tlp:E (2.3) BS05 CA 3.4.24.27 GO:0004222 ... P00800 3709536
    4920 1tlq:A (2.4) BS01 CA ? GO:0006629 ... P54173 N/A
    4921 1tlx:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    4922 1tlx:A (2.1) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    4923 1tlx:A (2.1) BS06 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    4924 1tlx:A (2.1) BS07 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    4925 1tm1:E (1.7) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    4926 1tm3:E (1.57) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    4927 1tm4:E (1.7) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    4928 1tm5:E (1.45) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    4929 1tm7:E (1.59) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    4930 1tmg:E (1.67) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    4931 1tmn:E (1.9) BS02 CA 3.4.24.27 GO:0004222 ... P00800 6395881
    4932 1tmn:E (1.9) BS03 CA 3.4.24.27 GO:0004222 ... P00800 6395881
    4933 1tmn:E (1.9) BS04 CA 3.4.24.27 GO:0004222 ... P00800 6395881
    4934 1tmn:E (1.9) BS05 CA 3.4.24.27 GO:0004222 ... P00800 6395881
    4935 1tmq:A (2.5) BS01 CA 3.2.1.1 GO:0003824 ... P56634 9687373
    4936 1tn3:A (2.0) BS01 CA ? N/A P05452 9757090
    4937 1tn3:A (2.0) BS02 CA ? N/A P05452 9757090
    4938 1tn4:A (1.95) BS01 CA ? GO:0005509 ... P02586 9438870
    4939 1tn4:A (1.95) BS02 CA ? GO:0005509 ... P02586 9438870
    4940 1tn4:A (1.95) BS03 CA ? GO:0005509 ... P02586 9438870
    4941 1tn4:A (1.95) BS04 CA ? GO:0005509 ... P02586 9438870
    4942 1tn4:A (1.95) BS05 CA ? GO:0005509 ... P02586 9438870
    4943 1tng:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    4944 1tnh:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    4945 1tni:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    4946 1tnj:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    4947 1tnk:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    4948 1tnl:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7634078
    4949 1tnq:A (-1.00) BS01 CA ? GO:0005509 ... P02588 7552750
    4950 1tnq:A (-1.00) BS02 CA ? GO:0005509 ... P02588 7552750
    4951 1to1:E (1.68) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    4952 1to2:E (1.3) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15504027
    4953 1top:A (1.78) BS01 CA ? GO:0003009 ... P02588 15299475
    4954 1top:A (1.78) BS02 CA ? GO:0003009 ... P02588 15299475
    4955 1tpa:E (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    4956 1tpo:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    4957 1tpp:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    4958 1tps:A (1.9) BS02 CA 3.4.21.4 GO:0004175 ... P00760 9383379
    4959 1tr5:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 15276844
    4960 1trk:A (2.0) BS01 CA 2.2.1.1 GO:0003824 ... P23254 8176731
    4961 1trk:B (2.0) BS02 CA 2.2.1.1 GO:0003824 ... P23254 8176731
    4962 1trm:A (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 3112942
    4963 1trm:B (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 3112942
    4964 1tt2:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 15276844
    4965 1ttx:A (-1.00) BS01 CA ? GO:0005509 ... P0CE72 15610002
    4966 1ttx:A (-1.00) BS02 CA ? GO:0005509 ... P0CE72 15610002
    4967 1tu5:A (2.37) BS02 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    4968 1tu5:A (2.37) BS03 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    4969 1tu5:B (2.37) BS02 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    4970 1tu5:B (2.37) BS03 CA 1.4.3.21 GO:0005507 ... Q29437 15701511
    4971 1tvg:A (1.6) BS01 CA ? GO:0001501 ... Q9Y547 18816799
    4972 1tw8:A (2.8) BS03 CA 3.1.21.4 GO:0003677 ... P17743 15491133
    4973 1tw8:B (2.8) BS03 CA 3.1.21.4 GO:0003677 ... P17743 15491133
    4974 1tw8:C (2.8) BS03 CA 3.1.21.4 GO:0003677 ... P17743 15491133
    4975 1tw8:D (2.8) BS03 CA 3.1.21.4 GO:0003677 ... P17743 15491133
    4976 1tx6:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15381428
    4977 1tx6:B (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15381428
    4978 1tx6:C (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15381428
    4979 1tx6:D (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15381428
    4980 1tx7:A (1.75) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11738605
    4981 1tx8:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 15380220
    4982 1tye:A (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    4983 1tye:A (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    4984 1tye:A (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    4985 1tye:A (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    4986 1tye:B (2.9) BS02 CA ? N/A P05106 15378069
    4987 1tye:B (2.9) BS03 CA ? N/A P05106 15378069
    4988 1tye:C (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    4989 1tye:C (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    4990 1tye:C (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    4991 1tye:C (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    4992 1tye:D (2.9) BS02 CA ? N/A P05106 15378069
    4993 1tye:D (2.9) BS03 CA ? N/A P05106 15378069
    4994 1tye:E (2.9) BS01 CA ? GO:0007155 ... P08514 15378069
    4995 1tye:E (2.9) BS02 CA ? GO:0007155 ... P08514 15378069
    4996 1tye:E (2.9) BS03 CA ? GO:0007155 ... P08514 15378069
    4997 1tye:E (2.9) BS04 CA ? GO:0007155 ... P08514 15378069
    4998 1tye:F (2.9) BS02 CA ? N/A P05106 15378069
    4999 1tye:F (2.9) BS03 CA ? N/A P05106 15378069
    5000 1tzn:A (4.3) BS01 CA ? GO:0005576 ... P13423 15326297

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218