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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 1sat:A (1.75) BS05 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    4602 1sat:A (1.75) BS06 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    4603 1sat:A (1.75) BS07 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    4604 1sat:A (1.75) BS08 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    4605 1sav:A (2.5) BS01 CA ? GO:0001786 ... P08758 1311770
    4606 1sav:A (2.5) BS02 CA ? GO:0001786 ... P08758 1311770
    4607 1sav:A (2.5) BS03 CA ? GO:0001786 ... P08758 1311770
    4608 1sav:A (2.5) BS04 CA ? GO:0001786 ... P08758 1311770
    4609 1sbc:A (2.5) BS01 CA 3.4.21.62 GO:0004252 ... P00780 3150541
    4610 1sbd:A (2.52) BS03 CA ? GO:0030246 ... P05046 9398234
    4611 1sbe:A (2.8) BS03 CA ? GO:0030246 ... P05046 9398234
    4612 1sbf:A (2.43) BS03 CA ? GO:0030246 ... P05046 9398234
    4613 1sbh:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    4614 1sbh:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    4615 1sbi:A (2.2) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    4616 1sbn:E (2.1) BS01 CA 3.4.21.62 GO:0004252 ... P00782 1992167
    4617 1sbn:E (2.1) BS02 CA 3.4.21.62 GO:0004252 ... P00782 1992167
    4618 1sbr:A (2.3) BS01 CA ? GO:0030975 ... O34911 15451668
    4619 1sbw:A (1.8) BS02 CA 3.4.21.4 GO:0004175 ... P00760 10447205
    4620 1sca:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P00780 8378343
    4621 1sca:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P00780 8378343
    4622 1scb:A (2.3) BS01 CA 3.4.21.62 GO:0004252 ... P00780 8378343
    4623 1scd:A (2.3) BS01 CA 3.4.21.62 GO:0004252 ... P00780 8297378
    4624 1scd:A (2.3) BS02 CA 3.4.21.62 GO:0004252 ... P00780 8297378
    4625 1scf:D (2.2) BS01 CA ? GO:0005173 ... P21583 10880433
    4626 1sch:A (2.56) BS01 CA 1.11.1.7 GO:0004601 ... P22195 8805539
    4627 1sch:A (2.56) BS02 CA 1.11.1.7 GO:0004601 ... P22195 8805539
    4628 1sch:B (2.56) BS01 CA 1.11.1.7 GO:0004601 ... P22195 8805539
    4629 1sch:B (2.56) BS02 CA 1.11.1.7 GO:0004601 ... P22195 8805539
    4630 1scj:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P04189 9811547
    4631 1scj:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P04189 9811547
    4632 1scm:B (2.8) BS01 CA ? GO:0005509 ... P13543 8127365
    4633 1scm:C (2.8) BS01 CA ? GO:0005509 ... P07291 8127365
    4634 1scn:E (1.9) BS02 CA 3.4.21.62 GO:0004252 ... P00780 8068694
    4635 1scn:E (1.9) BS03 CA 3.4.21.62 GO:0004252 ... P00780 8068694
    4636 1scr:A (2.0) BS02 CA ? GO:0030246 ... P02866 15299372
    4637 1scs:A (1.6) BS02 CA ? GO:0030246 ... P02866 15299372
    4638 1scv:A (-1.00) BS01 CA ? GO:0005509 ... P09860 15350124
    4639 1scv:A (-1.00) BS02 CA ? GO:0005509 ... P09860 15350124
    4640 1sdd:A (2.8) BS01 CA ? GO:0005507 ... Q28107 15184653
    4641 1sel:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P00780 8512925
    4642 1sel:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P00780 8512925
    4643 1sel:B (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P00780 8512925
    4644 1sel:B (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P00780 8512925
    4645 1sfi:A (1.65) BS02 CA 3.4.21.4 GO:0004175 ... P00760 10390350
    4646 1sfv:A (-1.00) BS01 CA 3.1.1.4 GO:0002446 ... P00592 7703697
    4647 1sfw:A (-1.00) BS01 CA 3.1.1.4 GO:0002446 ... P00592 7703697
    4648 1sfy:A (2.55) BS04 CA ? GO:0030246 ... P16404 15281133
    4649 1sfy:B (2.55) BS03 CA ? GO:0030246 ... P16404 15281133
    4650 1sfy:C (2.55) BS03 CA ? GO:0030246 ... P16404 15281133
    4651 1sfy:D (2.55) BS03 CA ? GO:0030246 ... P16404 15281133
    4652 1sfy:E (2.55) BS03 CA ? GO:0030246 ... P16404 15281133
    4653 1sfy:F (2.55) BS04 CA ? GO:0030246 ... P16404 15281133
    4654 1sgt:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00775 3135412
    4655 1sh7:A (1.84) BS01 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4656 1sh7:A (1.84) BS02 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4657 1sh7:A (1.84) BS03 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4658 1sh7:B (1.84) BS01 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4659 1sh7:B (1.84) BS02 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4660 1sh7:B (1.84) BS03 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4661 1sib:E (2.4) BS01 CA 3.4.21.62 GO:0004252 ... P00782 1992167
    4662 1sib:E (2.4) BS02 CA 3.4.21.62 GO:0004252 ... P00782 1992167
    4663 1sio:A (1.8) BS02 CA ? GO:0004252 ... Q8GB88 15014068
    4664 1sio:B (1.8) BS02 CA ? GO:0004252 ... Q8GB88 15014068
    4665 1sio:C (1.8) BS02 CA ? GO:0004252 ... Q8GB88 15014068
    4666 1siu:A (2.31) BS01 CA ? GO:0004252 ... Q8GB88 15014068
    4667 1sk6:D (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    4668 1sk6:D (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    4669 1sk6:E (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    4670 1sk6:E (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    4671 1sk6:F (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    4672 1sk6:F (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    4673 1sl4:A (1.55) BS03 CA ? N/A Q9NNX6 15195147
    4674 1sl4:A (1.55) BS04 CA ? N/A Q9NNX6 15195147
    4675 1sl4:A (1.55) BS05 CA ? N/A Q9NNX6 15195147
    4676 1sl5:A (1.8) BS02 CA ? N/A Q9NNX6 15195147
    4677 1sl5:A (1.8) BS03 CA ? N/A Q9NNX6 15195147
    4678 1sl6:A (2.25) BS02 CA ? N/A Q9H2X3 15195147
    4679 1sl6:A (2.25) BS03 CA ? N/A Q9H2X3 15195147
    4680 1sl6:A (2.25) BS04 CA ? N/A Q9H2X3 15195147
    4681 1sl6:A (2.25) BS05 CA ? N/A Q9H2X3 15195147
    4682 1sl6:A (2.25) BS06 CA ? N/A Q9H2X3 15195147
    4683 1sl6:B (2.25) BS03 CA ? N/A Q9H2X3 15195147
    4684 1sl6:B (2.25) BS04 CA ? N/A Q9H2X3 15195147
    4685 1sl6:B (2.25) BS05 CA ? N/A Q9H2X3 15195147
    4686 1sl6:B (2.25) BS06 CA ? N/A Q9H2X3 15195147
    4687 1sl6:B (2.25) BS07 CA ? N/A Q9H2X3 15195147
    4688 1sl6:C (2.25) BS02 CA ? N/A Q9H2X3 15195147
    4689 1sl6:C (2.25) BS03 CA ? N/A Q9H2X3 15195147
    4690 1sl6:C (2.25) BS04 CA ? N/A Q9H2X3 15195147
    4691 1sl6:C (2.25) BS05 CA ? N/A Q9H2X3 15195147
    4692 1sl6:D (2.25) BS02 CA ? N/A Q9H2X3 15195147
    4693 1sl6:D (2.25) BS03 CA ? N/A Q9H2X3 15195147
    4694 1sl6:D (2.25) BS04 CA ? N/A Q9H2X3 15195147
    4695 1sl6:D (2.25) BS05 CA ? N/A Q9H2X3 15195147
    4696 1sl6:E (2.25) BS02 CA ? N/A Q9H2X3 15195147
    4697 1sl6:E (2.25) BS03 CA ? N/A Q9H2X3 15195147
    4698 1sl6:E (2.25) BS04 CA ? N/A Q9H2X3 15195147
    4699 1sl6:F (2.25) BS02 CA ? N/A Q9H2X3 15195147
    4700 1sl6:F (2.25) BS03 CA ? N/A Q9H2X3 15195147
    4701 1sl6:F (2.25) BS04 CA ? N/A Q9H2X3 15195147
    4702 1sl7:A (2.2) BS01 CA ? GO:0005509 ... Q27709 15689515
    4703 1sl7:A (2.2) BS02 CA ? GO:0005509 ... Q27709 15689515
    4704 1sl7:A (2.2) BS03 CA ? GO:0005509 ... Q27709 15689515
    4705 1sl8:A (1.7) BS01 CA ? GO:0005509 ... P07164 15689515
    4706 1sl8:A (1.7) BS02 CA ? GO:0005509 ... P07164 15689515
    4707 1sl8:A (1.7) BS03 CA ? GO:0005509 ... P07164 15689515
    4708 1slm:A (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    4709 1slm:A (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    4710 1sln:A (2.27) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    4711 1sln:A (2.27) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    4712 1sln:A (2.27) BS05 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    4713 1slu:B (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    4714 1slv:B (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    4715 1slw:B (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    4716 1slx:B (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    4717 1smd:A (1.6) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    4718 1smf:E (2.1) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7798176
    4719 1smg:A (-1.00) BS01 CA ? GO:0005509 ... P02588 9109645
    4720 1smp:A (2.3) BS02 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    4721 1smp:A (2.3) BS03 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    4722 1smp:A (2.3) BS04 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    4723 1smp:A (2.3) BS05 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    4724 1smp:A (2.3) BS06 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    4725 1smp:A (2.3) BS07 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    4726 1smp:A (2.3) BS08 CA 3.4.24.40 GO:0001907 ... P23694 7752231
    4727 1smv:A (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    4728 1smv:A (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    4729 1smv:B (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    4730 1smv:B (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    4731 1smv:C (3.0) BS01 CA ? GO:0005198 ... Q9EB06 8589997
    4732 1smv:C (3.0) BS02 CA ? GO:0005198 ... Q9EB06 8589997
    4733 1sn7:A (2.0) BS01 CA ? GO:0004252 ... Q8GB88 15014068
    4734 1snc:A (1.65) BS01 CA 3.1.31.1 GO:0003676 ... P00644 2780539
    4735 1snm:A (1.74) BS01 CA 3.1.31.1 GO:0003676 ... P00644 2397218
    4736 1snn:A (1.55) BS03 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    4737 1snn:A (1.55) BS04 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    4738 1snn:A (1.55) BS05 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    4739 1spj:A (1.7) BS01 CA 3.4.21.35 GO:0003073 ... P06870 15651049
    4740 1spu:A (2.0) BS02 CA 1.4.3.21 GO:0005507 ... P46883 9048544
    4741 1spu:A (2.0) BS03 CA 1.4.3.21 GO:0005507 ... P46883 9048544
    4742 1spu:B (2.0) BS02 CA 1.4.3.21 GO:0005507 ... P46883 9048544
    4743 1spu:B (2.0) BS03 CA 1.4.3.21 GO:0005507 ... P46883 9048544
    4744 1sr6:C (2.75) BS01 CA ? GO:0005509 ... P07291 15184651
    4745 1sra:A (2.0) BS01 CA ? GO:0005509 ... P09486 8548457
    4746 1sra:A (2.0) BS02 CA ? GO:0005509 ... P09486 8548457
    4747 1sra:A (2.0) BS03 CA ? GO:0005509 ... P09486 8548457
    4748 1srp:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    4749 1srp:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    4750 1srp:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    4751 1srp:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    4752 1srp:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    4753 1srp:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    4754 1srp:A (2.0) BS07 CA 3.4.24.40 GO:0004222 ... P07268 8797082
    4755 1srr:A (1.9) BS01 CA 2.7.-.- GO:0000160 ... P06628 8805550
    4756 1srr:C (1.9) BS01 CA 2.7.-.- GO:0000160 ... P06628 8805550
    4757 1st2:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P00782 3286644
    4758 1st2:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P00782 3286644
    4759 1st3:A (1.4) BS01 CA 3.4.21.62 GO:0004252 ... P29599 1453465
    4760 1st3:A (1.4) BS02 CA 3.4.21.62 GO:0004252 ... P29599 1453465
    4761 1sta:A (1.7) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8019410
    4762 1stb:A (2.0) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8019410
    4763 1sty:A (1.67) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8475069
    4764 1su3:A (2.2) BS01 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    4765 1su3:A (2.2) BS02 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    4766 1su3:A (2.2) BS03 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    4767 1su3:A (2.2) BS04 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    4768 1su3:B (2.2) BS01 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    4769 1su3:B (2.2) BS02 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    4770 1su3:B (2.2) BS03 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    4771 1su3:B (2.2) BS04 CA 3.4.24.7 GO:0004175 ... P03956 15611040
    4772 1su4:A (2.4) BS01 CA 7.2.2.10 GO:0000166 ... P04191 10864315
    4773 1su4:A (2.4) BS02 CA 7.2.2.10 GO:0000166 ... P04191 10864315
    4774 1sub:A (1.75) BS01 CA 3.4.21.62 GO:0004252 ... P00782 8332608
    4775 1sud:A (1.9) BS01 CA 3.4.21.62 GO:0004252 ... P00782 8332608
    4776 1sud:A (1.9) BS02 CA 3.4.21.62 GO:0004252 ... P00782 8332608
    4777 1sui:A (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    4778 1sui:B (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    4779 1sui:C (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    4780 1sui:D (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    4781 1sup:A (1.6) BS01 CA 3.4.21.62 GO:0004252 ... P00782 15299573
    4782 1sus:A (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    4783 1sus:B (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    4784 1sus:C (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    4785 1sus:D (2.7) BS01 CA 2.1.1.104 GO:0008168 ... Q40313 15734921
    4786 1svn:A (1.4) BS01 CA 3.4.21.62 GO:0004252 ... P29600 1738156
    4787 1svn:A (1.4) BS02 CA 3.4.21.62 GO:0004252 ... P29600 1738156
    4788 1svy:A (1.75) BS01 CA ? GO:0051015 ... P10733 10820002
    4789 1sw8:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 15100408
    4790 1sw8:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 15100408
    4791 1sxn:A (1.9) BS03 CA 1.15.1.1 GO:0000209 ... P00442 N/A
    4792 1sxn:B (1.9) BS03 CA 1.15.1.1 GO:0000209 ... P00442 N/A
    4793 1sxs:A (2.0) BS03 CA 1.15.1.1 GO:0000209 ... P00442 N/A
    4794 1sxs:B (2.0) BS03 CA 1.15.1.1 GO:0000209 ... P00442 N/A
    4795 1sxz:A (2.05) BS03 CA 1.15.1.1 GO:0000209 ... P00442 N/A
    4796 1sy9:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 15803393
    4797 1sy9:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 15803393
    4798 1sy9:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 15803393
    4799 1sy9:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 15803393
    4800 1syb:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 2716830

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218