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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 1rf0:C (2.81) BS01 CA ? GO:0005102 ... P02679 14992585
    4402 1rf0:E (2.81) BS01 CA ? GO:0005102 ... P02675 14992585
    4403 1rf0:E (2.81) BS02 CA ? GO:0005102 ... P02675 14992585
    4404 1rf0:F (2.81) BS01 CA ? GO:0005102 ... P02679 14992585
    4405 1rf1:B (2.53) BS02 CA ? GO:0005102 ... P02675 14992585
    4406 1rf1:C (2.53) BS02 CA ? GO:0005102 ... P02679 14992585
    4407 1rf1:E (2.53) BS02 CA ? GO:0005102 ... P02675 14992585
    4408 1rf1:F (2.53) BS02 CA ? GO:0005102 ... P02679 14992585
    4409 1rfj:A (2.0) BS01 CA ? GO:0005509 ... Q7DMN9 15213382
    4410 1rfj:A (2.0) BS02 CA ? GO:0005509 ... Q7DMN9 15213382
    4411 1rfj:A (2.0) BS03 CA ? GO:0005509 ... Q7DMN9 15213382
    4412 1rfj:A (2.0) BS04 CA ? GO:0005509 ... Q7DMN9 15213382
    4413 1rfn:A (2.8) BS01 CA 3.4.21.22 GO:0004252 ... P00740 10467148
    4414 1rgi:G (3.0) BS01 CA ? GO:0051015 ... Q28372 15215896
    4415 1rgi:G (3.0) BS02 CA ? GO:0051015 ... Q28372 15215896
    4416 1rgi:G (3.0) BS03 CA ? GO:0051015 ... Q28372 15215896
    4417 1rin:A (2.6) BS03 CA ? GO:0030246 ... P02867 8486683
    4418 1rin:C (2.6) BS03 CA ? GO:0030246 ... P02867 8486683
    4419 1rir:A (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    4420 1rir:B (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    4421 1rir:C (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    4422 1rir:D (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    4423 1rit:A (2.85) BS02 CA ? GO:0030246 ... P02872 15823017
    4424 1rit:B (2.85) BS03 CA ? GO:0030246 ... P02872 15823017
    4425 1rit:C (2.85) BS04 CA ? GO:0030246 ... P02872 15823017
    4426 1rit:D (2.85) BS04 CA ? GO:0030246 ... P02872 15823017
    4427 1rjv:A (-1.00) BS01 CA ? GO:0005509 ... P20472 15122922
    4428 1rjv:A (-1.00) BS02 CA ? GO:0005509 ... P20472 15122922
    4429 1rk8:A (1.9) BS01 CA ? GO:0000226 ... Q9V535 14968132
    4430 1rk8:A (1.9) BS02 CA ? GO:0000226 ... Q9V535 14968132
    4431 1rk9:A (-1.00) BS01 CA ? GO:0005509 ... P20472 15122922
    4432 1rk9:A (-1.00) BS02 CA ? GO:0005509 ... P20472 15122922
    4433 1rky:A (1.68) BS02 CA 1.4.3.- GO:0005507 ... Q96X16 15533431
    4434 1rky:A (1.68) BS03 CA 1.4.3.- GO:0005507 ... Q96X16 15533431
    4435 1rlw:A (2.4) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P47712 9430701
    4436 1rlw:A (2.4) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P47712 9430701
    4437 1rm8:A (1.8) BS03 CA 3.4.24.- GO:0004222 ... P51512 14741217
    4438 1rm8:A (1.8) BS04 CA 3.4.24.- GO:0004222 ... P51512 14741217
    4439 1rmz:A (1.34) BS03 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    4440 1rmz:A (1.34) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    4441 1rmz:A (1.34) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15809432
    4442 1ros:A (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    4443 1ros:A (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    4444 1ros:A (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    4445 1ros:B (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    4446 1ros:B (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    4447 1ros:B (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    4448 1rp1:A (2.1) BS01 CA 3.1.1.3 GO:0004806 ... P06857 9726421
    4449 1rp8:A (2.0) BS11 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4450 1rp8:A (2.0) BS12 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4451 1rp8:A (2.0) BS13 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4452 1rp9:A (2.0) BS08 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4453 1rp9:A (2.0) BS09 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4454 1rp9:A (2.0) BS10 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4455 1rpk:A (2.0) BS07 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4456 1rpk:A (2.0) BS08 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4457 1rpk:A (2.0) BS09 CA 3.2.1.1 GO:0004556 ... P00693 16030022
    4458 1rpz:A (2.9) BS02 CA 2.7.1.78
    3.1.3.34
    GO:0005524 ... P06855 14754987
    4459 1rq5:A (2.4) BS05 CA 3.2.1.- GO:0004553 ... Q59325 14756552
    4460 1rq5:A (2.4) BS06 CA 3.2.1.- GO:0004553 ... Q59325 14756552
    4461 1rrc:A (2.46) BS02 CA 2.7.1.78
    3.1.3.34
    GO:0005524 ... P06855 14754987
    4462 1rro:A (1.3) BS01 CA ? GO:0005509 ... P02631 8487302
    4463 1rro:A (1.3) BS02 CA ? GO:0005509 ... P02631 8487302
    4464 1rro:A (1.3) BS03 CA ? GO:0005509 ... P02631 8487302
    4465 1rrq:A (2.22) BS03 CA 3.2.2.31 GO:0000701 ... P83847 14961129
    4466 1rrs:A (2.4) BS03 CA 3.2.2.31 GO:0000701 ... P83847 14961129
    4467 1rtg:A (2.6) BS01 CA 3.4.24.24 N/A P08253 8549817
    4468 1rtg:A (2.6) BS02 CA 3.4.24.24 N/A P08253 8549817
    4469 1rtm:1 (1.8) BS01 CA ? N/A P19999 7704532
    4470 1rtm:1 (1.8) BS02 CA ? N/A P19999 7704532
    4471 1rtm:1 (1.8) BS03 CA ? N/A P19999 7704532
    4472 1rtm:2 (1.8) BS01 CA ? N/A P19999 7704532
    4473 1rtm:2 (1.8) BS02 CA ? N/A P19999 7704532
    4474 1rtm:2 (1.8) BS03 CA ? N/A P19999 7704532
    4475 1rtm:3 (1.8) BS01 CA ? N/A P19999 7704532
    4476 1rtm:3 (1.8) BS02 CA ? N/A P19999 7704532
    4477 1rtm:3 (1.8) BS03 CA ? N/A P19999 7704532
    4478 1rtp:1 (2.0) BS01 CA ? GO:0005509 ... P02625 8289291
    4479 1rtp:1 (2.0) BS02 CA ? GO:0005509 ... P02625 8289291
    4480 1rtp:2 (2.0) BS01 CA ? GO:0005509 ... P02625 8289291
    4481 1rtp:2 (2.0) BS02 CA ? GO:0005509 ... P02625 8289291
    4482 1rtp:3 (2.0) BS01 CA ? GO:0005509 ... P02625 8289291
    4483 1rtp:3 (2.0) BS02 CA ? GO:0005509 ... P02625 8289291
    4484 1ru4:A (1.6) BS01 CA 4.2.2.2 GO:0005576 ... P0C1A7 14670977
    4485 1ru4:A (1.6) BS02 CA 4.2.2.2 GO:0005576 ... P0C1A7 14670977
    4486 1rwy:A (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    4487 1rwy:A (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    4488 1rwy:B (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    4489 1rwy:B (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    4490 1rwy:C (1.05) BS01 CA ? GO:0005509 ... P02625 15169955
    4491 1rwy:C (1.05) BS02 CA ? GO:0005509 ... P02625 15169955
    4492 1rxo:B (2.2) BS02 CA 4.1.1.39 GO:0000287 ... P00875 9034362
    4493 1rxo:E (2.2) BS02 CA 4.1.1.39 GO:0000287 ... P00875 9034362
    4494 1rxo:H (2.2) BS02 CA 4.1.1.39 GO:0000287 ... P00875 9034362
    4495 1rxo:L (2.2) BS02 CA 4.1.1.39 GO:0000287 ... P00875 9034362
    4496 1rxp:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 15081015
    4497 1ryr:A (2.28) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    4498 1rys:A (2.03) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    4499 1rys:A (2.03) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    4500 1rys:B (2.03) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    4501 1rys:B (2.03) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    4502 1rz5:A (2.4) BS01 CA 1.11.1.5 GO:0004130 ... P83787 15274917
    4503 1s01:A (1.7) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    4504 1s02:A (1.9) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2127106
    4505 1s02:A (1.9) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2127106
    4506 1s0b:A (2.0) BS01 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4507 1s0b:A (2.0) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4508 1s0c:A (2.2) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4509 1s0c:A (2.2) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4510 1s0d:A (2.2) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4511 1s0d:A (2.2) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4512 1s0e:A (1.9) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4513 1s0e:A (1.9) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4514 1s0f:A (2.3) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4515 1s0f:A (2.3) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    4516 1s0m:A (2.7) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    4517 1s0m:A (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    4518 1s0m:B (2.7) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    4519 1s0m:B (2.7) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    4520 1s0m:B (2.7) BS07 CA 2.7.7.7 GO:0000287 ... Q97W02 14982998
    4521 1s0n:A (2.8) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4522 1s0n:A (2.8) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4523 1s0n:A (2.8) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4524 1s0o:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4525 1s0o:A (2.1) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4526 1s0o:A (2.1) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4527 1s0o:B (2.1) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4528 1s0o:B (2.1) BS06 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4529 1s0o:B (2.1) BS07 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4530 1s0q:A (1.02) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    4531 1s0r:A (1.02) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    4532 1s0w:C (2.3) BS01 CA ? GO:0005515 ... P35804 15618400
    4533 1s0w:D (2.3) BS01 CA ? GO:0005515 ... P35804 15618400
    4534 1s10:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4535 1s10:A (2.1) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344
    4536 1s18:A (1.7) BS01 CA 3.6.1.6 GO:0005509 ... Q8WVQ1 15006348
    4537 1s18:B (1.7) BS01 CA 3.6.1.6 GO:0005509 ... Q8WVQ1 15006348
    4538 1s1a:A (1.8) BS04 CA ? GO:0030246 ... Q8GSD2 N/A
    4539 1s1a:B (1.8) BS02 CA ? GO:0030246 ... Q8GSD2 N/A
    4540 1s1d:A (1.6) BS01 CA 3.6.1.6 GO:0005509 ... Q8WVQ1 15006348
    4541 1s1d:B (1.6) BS01 CA 3.6.1.6 GO:0005509 ... Q8WVQ1 15006348
    4542 1s1e:A (2.3) BS01 CA ? GO:0005267 ... Q9NZI2 14980207
    4543 1s1e:A (2.3) BS02 CA ? GO:0005267 ... Q9NZI2 14980207
    4544 1s26:D (3.0) BS01 CA ? GO:0000086 ... P0DP23 15063758
    4545 1s26:D (3.0) BS02 CA ? GO:0000086 ... P0DP23 15063758
    4546 1s26:E (3.0) BS01 CA ? GO:0000086 ... P0DP23 15063758
    4547 1s26:E (3.0) BS02 CA ? GO:0000086 ... P0DP23 15063758
    4548 1s26:F (3.0) BS01 CA ? GO:0000086 ... P0DP23 15063758
    4549 1s26:F (3.0) BS02 CA ? GO:0000086 ... P0DP23 15063758
    4550 1s2n:A (2.44) BS01 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4551 1s2n:A (2.44) BS02 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4552 1s2n:A (2.44) BS03 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4553 1s2n:B (2.44) BS01 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4554 1s2n:B (2.44) BS02 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4555 1s2n:B (2.44) BS03 CA 3.4.21.- GO:0004252 ... Q8GB52 15670163
    4556 1s3p:A (2.0) BS01 CA ? GO:0005509 ... P02625 15287728
    4557 1s3p:A (2.0) BS02 CA ? GO:0005509 ... P02625 15287728
    4558 1s3x:A (1.84) BS02 CA ? GO:0005524 ... P0DMV8 9083109
    4559 1s5g:Z (3.1) BS01 CA ? GO:0005509 ... P07291 15184651
    4560 1s5s:A (1.4) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    4561 1s6b:A (1.6) BS01 CA 3.1.1.4 GO:0004623 ... P60043 15828003
    4562 1s6b:B (1.6) BS01 CA 3.1.1.4 GO:0004623 ... P60044 15828003
    4563 1s6b:B (1.6) BS02 CA 3.1.1.4 GO:0004623 ... P60044 15828003
    4564 1s6c:A (2.0) BS02 CA ? GO:0005509 ... Q8R426 14980206
    4565 1s6c:A (2.0) BS03 CA ? GO:0005509 ... Q8R426 14980206
    4566 1s6f:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    4567 1s6h:A (1.45) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    4568 1s6i:A (-1.00) BS01 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    4569 1s6i:A (-1.00) BS02 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    4570 1s6i:A (-1.00) BS03 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    4571 1s6i:A (-1.00) BS04 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    4572 1s6j:A (-1.00) BS01 CA 2.7.11.1 GO:0005509 ... P28583 15568805
    4573 1s6j:A (-1.00) BS02 CA 2.7.11.1 GO:0005509 ... P28583 15568805
    4574 1s81:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    4575 1s82:A (1.85) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    4576 1s83:A (1.25) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    4577 1s84:A (1.85) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    4578 1s85:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    4579 1s97:A (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4580 1s97:B (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4581 1s97:C (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4582 1s97:D (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4583 1s99:A (1.65) BS01 CA ? GO:0030975 ... O34911 15451668
    4584 1s9f:A (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4585 1s9f:B (2.0) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4586 1s9f:C (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4587 1s9f:D (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    4588 1sac:A (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    4589 1sac:A (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    4590 1sac:B (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    4591 1sac:B (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    4592 1sac:C (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    4593 1sac:C (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    4594 1sac:D (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    4595 1sac:D (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    4596 1sac:E (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    4597 1sac:E (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    4598 1sat:A (1.75) BS02 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    4599 1sat:A (1.75) BS03 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    4600 1sat:A (1.75) BS04 CA 3.4.24.40 GO:0001907 ... P23694 8089845

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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