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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44201 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    44202 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    44203 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    44204 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    44205 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    44206 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    44207 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    44208 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    44209 8z3s:A (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    44210 8z3s:A (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    44211 8z3s:B (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    44212 8z3s:B (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    44213 8z3s:C (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    44214 8z3s:C (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    44215 8z3s:D (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    44216 8z3s:D (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    44217 8zb8:A (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    44218 8zb8:C (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    44219 8zjf:B (2.7) BS02 CA ? N/A P26010 38781659
    44220 8zjf:B (2.7) BS03 CA ? N/A P26010 38781659
    44221 8zm4:A (1.4) BS02 CA 3.4.24.27 N/A P00800 N/A
    44222 8zm4:A (1.4) BS03 CA 3.4.24.27 N/A P00800 N/A
    44223 8zm4:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    44224 8zm4:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    44225 8zm5:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    44226 8zm5:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    44227 8zm5:A (1.4) BS06 CA 3.4.24.27 N/A P00800 N/A
    44228 8zm5:A (1.4) BS07 CA 3.4.24.27 N/A P00800 N/A
    44229 8zm6:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    44230 8zm6:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    44231 8zm6:A (1.4) BS06 CA 3.4.24.27 N/A P00800 N/A
    44232 8zm6:A (1.4) BS07 CA 3.4.24.27 N/A P00800 N/A
    44233 8zrz:A (1.26) BS11 CA N/A N/A P36924 N/A
    44234 966c:A (1.9) BS03 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    44235 966c:A (1.9) BS04 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    44236 966c:A (1.9) BS05 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    44237 9asb:Q (3.4) BS02 CA ? GO:0004930 ... P41180 38632411
    44238 9asb:Q (3.4) BS03 CA ? GO:0004930 ... P41180 38632411
    44239 9asb:R (3.4) BS02 CA ? GO:0004930 ... P41180 38632411
    44240 9asb:R (3.4) BS03 CA ? GO:0004930 ... P41180 38632411
    44241 9asm:A (2.8) BS05 CA N/A N/A Q9NRR4 N/A
    44242 9asm:A (2.8) BS06 CA N/A N/A Q9NRR4 N/A
    44243 9asn:A (3.2) BS05 CA N/A N/A Q9NRR4 N/A
    44244 9asn:A (3.2) BS06 CA N/A N/A Q9NRR4 N/A
    44245 9aso:A (2.9) BS06 CA N/A N/A Q9NRR4 N/A
    44246 9aso:A (2.9) BS07 CA N/A N/A Q9NRR4 N/A
    44247 9asp:A (3.2) BS04 CA N/A N/A Q9NRR4 N/A
    44248 9asq:A (3.0) BS05 CA N/A N/A Q9NRR4 N/A
    44249 9asq:A (3.0) BS06 CA N/A N/A Q9NRR4 N/A
    44250 9avg:Q (3.6) BS02 CA ? GO:0004930 ... P41180 38632411
    44251 9avg:Q (3.6) BS03 CA ? GO:0004930 ... P41180 38632411
    44252 9avg:R (3.6) BS03 CA ? GO:0004930 ... P41180 38632411
    44253 9avg:R (3.6) BS04 CA ? GO:0004930 ... P41180 38632411
    44254 9avg:R (3.6) BS05 CA ? GO:0004930 ... P41180 38632411
    44255 9avl:Q (3.8) BS02 CA ? GO:0004930 ... P41180 38632411
    44256 9avl:R (3.8) BS02 CA ? GO:0004930 ... P41180 38632411
    44257 9avl:R (3.8) BS03 CA ? GO:0004930 ... P41180 38632411
    44258 9axf:Q (3.5) BS02 CA ? GO:0004930 ... P41180 38632411
    44259 9axf:Q (3.5) BS03 CA ? GO:0004930 ... P41180 38632411
    44260 9axf:Q (3.5) BS04 CA ? GO:0004930 ... P41180 38632411
    44261 9axf:R (3.5) BS02 CA ? GO:0004930 ... P41180 38632411
    44262 9ayf:Q (3.6) BS02 CA ? GO:0004930 ... P41180 38632411
    44263 9ayf:Q (3.6) BS03 CA ? GO:0004930 ... P41180 38632411
    44264 9ayf:Q (3.6) BS04 CA ? GO:0004930 ... P41180 38632411
    44265 9ayf:R (3.6) BS02 CA ? GO:0004930 ... P41180 38632411
    44266 9ayf:R (3.6) BS03 CA ? GO:0004930 ... P41180 38632411
    44267 9ayg:A (3.0) BS01 CA ? GO:0005216 ... O95180 38605177
    44268 9ayh:A (3.1) BS02 CA ? GO:0005216 ... O95180 38605177
    44269 9ayj:A (3.2) BS02 CA ? GO:0005216 ... O95180 38605177
    44270 9ayk:A (3.0) BS02 CA ? GO:0005216 ... O95180 38605177
    44271 9ayl:A (2.8) BS02 CA ? GO:0005216 ... O95180 38605177
    44272 9b33:E (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    44273 9b33:F (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    44274 9b34:E (3.58) BS02 CA ? N/A P02866 38778115
    44275 9b34:F (3.58) BS02 CA ? N/A P02866 38778115
    44276 9b36:E (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    44277 9b36:F (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    44278 9b36:G (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    44279 9b36:H (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    44280 9b37:E (6.66) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    44281 9b37:F (6.66) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    44282 9b4e:A (2.7) BS06 CA N/A N/A P48651 39208797
    44283 9b4e:B (2.7) BS08 CA N/A N/A P48651 39208797
    44284 9b4f:A (3.27) BS01 CA N/A N/A P48651 39208797
    44285 9b4f:B (3.27) BS01 CA N/A N/A P48651 39208797
    44286 9b4g:A (2.87) BS06 CA N/A N/A P48651 39208797
    44287 9b4g:B (2.87) BS08 CA N/A N/A P48651 39208797
    44288 9b6j:A (3.53) BS01 CA N/A N/A Q8R4D5 39093967
    44289 9b6j:B (3.53) BS01 CA N/A N/A Q8R4D5 39093967
    44290 9b6j:C (3.53) BS01 CA N/A N/A Q8R4D5 39093967
    44291 9b6j:D (3.53) BS01 CA N/A N/A Q8R4D5 39093967
    44292 9b6k:A (4.13) BS01 CA N/A N/A Q8R4D5 39093967
    44293 9b6k:B (4.13) BS01 CA N/A N/A Q8R4D5 39093967
    44294 9b6k:C (4.13) BS01 CA N/A N/A Q8R4D5 39093967
    44295 9b6k:D (4.13) BS01 CA N/A N/A Q8R4D5 39093967
    44296 9b8w:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44297 9b8w:A (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44298 9b8w:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44299 9b8w:B (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44300 9b8w:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44301 9b8w:C (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44302 9b8w:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44303 9b8w:D (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44304 9b8x:A (3.0) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44305 9b8x:A (3.0) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44306 9b8y:A (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44307 9b8y:A (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44308 9b8y:B (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44309 9b8y:B (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44310 9b8y:C (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44311 9b8y:C (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44312 9b8y:D (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44313 9b8y:D (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44314 9b8z:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44315 9b8z:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44316 9b90:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44317 9b90:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44318 9b90:B (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44319 9b90:B (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44320 9b90:C (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44321 9b90:C (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44322 9b90:D (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44323 9b90:D (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44324 9b91:A (3.3) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44325 9b91:A (3.3) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    44326 9b92:A (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44327 9b92:B (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44328 9b92:C (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44329 9b92:D (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44330 9b94:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44331 9b94:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44332 9b94:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44333 9b94:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    44334 9b9g:H (3.5) BS01 CA N/A N/A P63098 39216471
    44335 9b9g:H (3.5) BS02 CA N/A N/A P63098 39216471
    44336 9b9g:J (3.5) BS01 CA N/A N/A P63098 39216471
    44337 9b9g:J (3.5) BS02 CA N/A N/A P63098 39216471
    44338 9bc3:A (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    44339 9bc3:A (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    44340 9bc3:B (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    44341 9bc3:B (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    44342 9bc4:A (1.84) BS02 CA N/A GO:0000785 ... P21980 38959038
    44343 9bc4:A (1.84) BS03 CA N/A GO:0000785 ... P21980 38959038
    44344 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    44345 9biw:A (2.496) BS01 CA N/A N/A N/A N/A
    44346 9biw:A (2.496) BS02 CA N/A N/A N/A N/A
    44347 9biw:A (2.496) BS03 CA N/A N/A N/A N/A
    44348 9biw:A (2.496) BS04 CA N/A N/A N/A N/A
    44349 9biw:B (2.496) BS01 CA N/A N/A N/A N/A
    44350 9buj:A (2.19) BS01 CA N/A N/A A0A833EL34 38935515
    44351 9c11:B (1.95) BS02 CA N/A N/A P00644 N/A
    44352 9c4i:A (1.3) BS04 CA N/A GO:0005537 ... C0HK20 N/A
    44353 9c4i:B (1.3) BS03 CA N/A GO:0005537 ... C0HK20 N/A
    44354 9c4o:A (1.99) BS01 CA N/A GO:0009279 ... P76115 N/A
    44355 9cgt:A (2.5) BS05 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    44356 9cgt:A (2.5) BS06 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    44357 9cii:A (1.85) BS02 CA N/A N/A Q5HHM4 N/A
    44358 9cij:A (1.9) BS02 CA N/A N/A Q5HHM4 N/A
    44359 9cik:A (1.95) BS02 CA N/A N/A Q5HHM4 N/A
    44360 9cil:A (2.0) BS02 CA N/A N/A Q5HHM4 N/A
    44361 9ciq:A (2.8) BS04 CA N/A N/A Q9Y253 39259676
    44362 9ciq:A (2.8) BS05 CA N/A N/A Q9Y253 39259676
    44363 9ckv:A (3.19) BS03 CA N/A N/A P08648 N/A
    44364 9ckv:A (3.19) BS04 CA N/A N/A P08648 N/A
    44365 9ckv:A (3.19) BS05 CA N/A N/A P08648 N/A
    44366 9ckv:A (3.19) BS06 CA N/A N/A P08648 N/A
    44367 9clp:A (3.43) BS02 CA N/A N/A Q90495 39195771
    44368 9clp:A (3.43) BS03 CA N/A N/A Q90495 39195771
    44369 9clp:A (3.43) BS04 CA N/A N/A Q90495 39195771
    44370 9ctq:A (2.41) BS01 CA N/A N/A O76090 39277606
    44371 9ctq:B (2.41) BS01 CA N/A N/A O76090 39277606
    44372 9ctq:C (2.41) BS01 CA N/A N/A O76090 39277606
    44373 9ctq:D (2.41) BS01 CA N/A N/A O76090 39277606
    44374 9ctq:E (2.41) BS01 CA N/A N/A O76090 39277606
    44375 9ctr:A (2.42) BS02 CA N/A N/A O76090 39277606
    44376 9ctr:B (2.42) BS01 CA N/A N/A O76090 39277606
    44377 9ctr:C (2.42) BS02 CA N/A N/A O76090 39277606
    44378 9ctr:D (2.42) BS01 CA N/A N/A O76090 39277606
    44379 9ctr:E (2.42) BS01 CA N/A N/A O76090 39277606
    44380 9cts:A (2.45) BS02 CA N/A N/A O76090 39277606
    44381 9cts:B (2.45) BS01 CA N/A N/A O76090 39277606
    44382 9cts:C (2.45) BS01 CA N/A N/A O76090 39277606
    44383 9cts:D (2.45) BS02 CA N/A N/A O76090 39277606
    44384 9cts:E (2.45) BS01 CA N/A N/A O76090 39277606
    44385 9ctt:A (2.5) BS01 CA N/A N/A O76090 39277606
    44386 9ctt:B (2.5) BS01 CA N/A N/A O76090 39277606
    44387 9ctt:C (2.5) BS01 CA N/A N/A O76090 39277606
    44388 9ctt:D (2.5) BS01 CA N/A N/A O76090 39277606
    44389 9ctt:E (2.5) BS01 CA N/A N/A O76090 39277606
    44390 9cu9:A (1.9) BS02 CA N/A N/A Q5HHM4 N/A
    44391 9d8s:A (2.12) BS02 CA N/A N/A A3FQ16 N/A
    44392 9d8s:A (2.12) BS03 CA N/A N/A A3FQ16 N/A
    44393 9en2:A (2.2) BS01 CA N/A N/A Q15113 38901640
    44394 9en2:A (2.2) BS02 CA N/A N/A Q15113 38901640
    44395 9enp:A (2.12) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    44396 9enp:A (2.12) BS04 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    44397 9enq:A (2.12) BS02 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    44398 9enq:A (2.12) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    44399 9ent:A (2.2) BS04 CA N/A N/A Q64610 39008358
    44400 9est:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 1998677
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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