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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44001 8wv4:A (3.3) BS01 CA N/A N/A P02741 38935342
    44002 8wv4:A (3.3) BS02 CA N/A N/A P02741 38935342
    44003 8wv4:B (3.3) BS01 CA N/A N/A P02741 38935342
    44004 8wv4:B (3.3) BS02 CA N/A N/A P02741 38935342
    44005 8wv4:C (3.3) BS01 CA N/A N/A P02741 38935342
    44006 8wv4:C (3.3) BS02 CA N/A N/A P02741 38935342
    44007 8wv4:D (3.3) BS01 CA N/A N/A P02741 38935342
    44008 8wv4:D (3.3) BS02 CA N/A N/A P02741 38935342
    44009 8wv4:E (3.3) BS01 CA N/A N/A P02741 38935342
    44010 8wv4:E (3.3) BS02 CA N/A N/A P02741 38935342
    44011 8wv5:A (3.5) BS01 CA N/A N/A P02741 38935342
    44012 8wv5:A (3.5) BS02 CA N/A N/A P02741 38935342
    44013 8wv5:B (3.5) BS01 CA N/A N/A P02741 38935342
    44014 8wv5:B (3.5) BS02 CA N/A N/A P02741 38935342
    44015 8wv5:C (3.5) BS01 CA N/A N/A P02741 38935342
    44016 8wv5:C (3.5) BS02 CA N/A N/A P02741 38935342
    44017 8wv5:D (3.5) BS01 CA N/A N/A P02741 38935342
    44018 8wv5:D (3.5) BS02 CA N/A N/A P02741 38935342
    44019 8wv5:E (3.5) BS01 CA N/A N/A P02741 38935342
    44020 8wv5:E (3.5) BS02 CA N/A N/A P02741 38935342
    44021 8wv5:F (3.5) BS01 CA N/A N/A P02741 38935342
    44022 8wv5:F (3.5) BS02 CA N/A N/A P02741 38935342
    44023 8wv5:G (3.5) BS01 CA N/A N/A P02741 38935342
    44024 8wv5:G (3.5) BS02 CA N/A N/A P02741 38935342
    44025 8wv5:H (3.5) BS01 CA N/A N/A P02741 38935342
    44026 8wv5:H (3.5) BS02 CA N/A N/A P02741 38935342
    44027 8wv5:I (3.5) BS01 CA N/A N/A P02741 38935342
    44028 8wv5:I (3.5) BS02 CA N/A N/A P02741 38935342
    44029 8wv5:J (3.5) BS01 CA N/A N/A P02741 38935342
    44030 8wv5:J (3.5) BS02 CA N/A N/A P02741 38935342
    44031 8wy5:C (3.12) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    44032 8wy5:D (3.12) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    44033 8x39:A (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    44034 8x39:A (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    44035 8x39:A (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    44036 8x39:A (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    44037 8x39:B (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    44038 8x39:B (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    44039 8x39:B (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    44040 8x39:B (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    44041 8x3a:A (-1.00) BS01 CA ? GO:0000272 ... A3DK52 38501488
    44042 8x3a:A (-1.00) BS02 CA ? GO:0000272 ... A3DK52 38501488
    44043 8x3a:A (-1.00) BS03 CA ? GO:0000272 ... A3DK52 38501488
    44044 8x3a:A (-1.00) BS04 CA ? GO:0000272 ... A3DK52 38501488
    44045 8x51:A (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    44046 8x51:B (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    44047 8x8g:A (2.27) BS06 CA N/A N/A N/A 38938812
    44048 8x90:A (2.95) BS04 CA ? GO:0001540 ... O00555 38443561
    44049 8x90:B (2.95) BS01 CA ? N/A P54289 38443561
    44050 8x91:A (3.11) BS04 CA ? GO:0001540 ... O00555 38443561
    44051 8x91:B (3.11) BS01 CA ? N/A P54289 38443561
    44052 8x93:A (2.92) BS10 CA ? GO:0001540 ... O00555 38443561
    44053 8x93:B (2.92) BS01 CA ? N/A P54289 38443561
    44054 8xa9:A (2.32) BS03 CA 3.1.-.- N/A Q9BQP7 38471810
    44055 8xa9:A (2.32) BS04 CA 3.1.-.- N/A Q9BQP7 38471810
    44056 8xa9:B (2.32) BS04 CA 3.1.-.- N/A Q9BQP7 38471810
    44057 8xa9:B (2.32) BS05 CA 3.1.-.- N/A Q9BQP7 38471810
    44058 8xfq:A (2.25) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44059 8xfq:A (2.25) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44060 8xfq:A (2.25) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44061 8xfq:A (2.25) BS09 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44062 8xfq:A (2.25) BS10 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44063 8xfq:A (2.25) BS11 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44064 8xfr:A (2.0) BS05 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44065 8xfr:A (2.0) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44066 8xfr:A (2.0) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44067 8xfr:A (2.0) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44068 8xfr:A (2.0) BS09 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44069 8xfr:A (2.0) BS10 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44070 8xfr:A (2.0) BS11 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    44071 8xho:A (2.5) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0016787 ... A0A1T4KK94 N/A
    44072 8xho:B (2.5) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0016787 ... A0A1T4KK94 N/A
    44073 8xho:B (2.5) BS02 CA 3.1.1.101
    3.1.1.74    		 GO:0016787 ... A0A1T4KK94 N/A
    44074 8xi4:M (3.4) BS01 CA N/A N/A P98155 39127734
    44075 8xi4:M (3.4) BS02 CA N/A N/A P98155 39127734
    44076 8xi4:N (3.4) BS01 CA N/A N/A P98155 39127734
    44077 8xi4:N (3.4) BS02 CA N/A N/A P98155 39127734
    44078 8xi4:O (3.4) BS01 CA N/A N/A P98155 39127734
    44079 8xi4:O (3.4) BS02 CA N/A N/A P98155 39127734
    44080 8xi4:P (3.4) BS01 CA N/A N/A P98155 39127734
    44081 8xi4:P (3.4) BS02 CA N/A N/A P98155 39127734
    44082 8xi5:M (3.4) BS01 CA N/A N/A P98155 39127734
    44083 8xi5:N (3.4) BS01 CA N/A N/A P98155 39127734
    44084 8xi5:O (3.4) BS01 CA N/A N/A P98155 39127734
    44085 8xi5:P (3.4) BS01 CA N/A N/A P98155 39127734
    44086 8xi5:Q (3.4) BS01 CA N/A N/A P98155 39127734
    44087 8xi5:R (3.4) BS01 CA N/A N/A P98155 39127734
    44088 8xi5:S (3.4) BS01 CA N/A N/A P98155 39127734
    44089 8xi5:T (3.4) BS01 CA N/A N/A P98155 39127734
    44090 8xph:A (2.2) BS01 CA N/A N/A N/A N/A
    44091 8xph:A (2.2) BS02 CA N/A N/A N/A N/A
    44092 8xph:B (2.2) BS01 CA N/A N/A N/A N/A
    44093 8xph:B (2.2) BS02 CA N/A N/A N/A N/A
    44094 8xpk:A (2.0) BS03 CA N/A N/A N/A N/A
    44095 8xpk:A (2.0) BS04 CA N/A N/A N/A N/A
    44096 8xpk:B (2.0) BS04 CA N/A N/A N/A N/A
    44097 8xpk:B (2.0) BS05 CA N/A N/A N/A N/A
    44098 8xrt:A (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    44099 8xrt:B (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    44100 8xrt:C (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    44101 8xrt:D (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    44102 8xrt:E (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    44103 8xrt:F (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    44104 8xru:A (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    44105 8xru:B (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    44106 8xrv:A (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    44107 8xrv:B (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    44108 8xrv:C (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    44109 8xrv:D (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    44110 8xrv:E (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    44111 8xrv:F (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    44112 8xrx:A (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    44113 8xrx:B (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    44114 8xrx:C (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    44115 8xrx:D (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    44116 8xrx:E (2.5) BS01 CA N/A GO:0004553 ... N/A 38527679
    44117 8xrx:F (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    44118 8xvf:A (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    44119 8xvf:B (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    44120 8xvf:C (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    44121 8xvf:D (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    44122 8xvf:E (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    44123 8xvf:F (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    44124 8xvf:G (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    44125 8xvf:H (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    44126 8xx9:A (1.55) BS02 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    44127 8xxa:A (1.55) BS09 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    44128 8xy0:A (1.9) BS01 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44129 8y1m:A (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44130 8y1m:A (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44131 8y1m:A (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44132 8y1m:A (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44133 8y1m:A (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44134 8y1m:B (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44135 8y1m:B (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44136 8y1m:B (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44137 8y1m:B (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44138 8y1m:B (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    44139 8y6b:A (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    44140 8y6b:A (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    44141 8y6b:A (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    44142 8y6b:B (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    44143 8y6b:B (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    44144 8y6b:B (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    44145 8y6b:C (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    44146 8y6b:C (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    44147 8y6b:C (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    44148 8y6b:D (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    44149 8y6b:E (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    44150 8y6b:F (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    44151 8y9x:A (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    44152 8yf6:A (3.23) BS01 CA N/A N/A Q9E6H7 39087906
    44153 8yf6:A (3.23) BS02 CA N/A N/A Q9E6H7 39087906
    44154 8yf6:B (3.23) BS01 CA N/A N/A Q9E6H7 39087906
    44155 8yf6:B (3.23) BS02 CA N/A N/A Q9E6H7 39087906
    44156 8yf6:C (3.23) BS01 CA N/A N/A Q9E6H7 39087906
    44157 8yf6:C (3.23) BS02 CA N/A N/A Q9E6H7 39087906
    44158 8yf7:A (2.82) BS01 CA N/A N/A Q9E6H7 39087906
    44159 8yf7:A (2.82) BS02 CA N/A N/A Q9E6H7 39087906
    44160 8yf7:B (2.82) BS01 CA N/A N/A Q9E6H7 39087906
    44161 8yf7:B (2.82) BS02 CA N/A N/A Q9E6H7 39087906
    44162 8yf7:C (2.82) BS01 CA N/A N/A Q9E6H7 39087906
    44163 8yf7:C (2.82) BS02 CA N/A N/A Q9E6H7 39087906
    44164 8yf8:A (3.52) BS01 CA N/A N/A Q9E6H7 39087906
    44165 8yf8:B (3.52) BS01 CA N/A N/A Q9E6H7 39087906
    44166 8yf8:B (3.52) BS02 CA N/A N/A Q9E6H7 39087906
    44167 8yf8:C (3.52) BS01 CA N/A N/A Q9E6H7 39087906
    44168 8yf8:C (3.52) BS02 CA N/A N/A Q9E6H7 39087906
    44169 8yf9:A (3.12) BS01 CA N/A N/A Q9E6H7 39087906
    44170 8yf9:A (3.12) BS02 CA N/A N/A Q9E6H7 39087906
    44171 8yf9:B (3.12) BS01 CA N/A N/A Q9E6H7 39087906
    44172 8yf9:B (3.12) BS02 CA N/A N/A Q9E6H7 39087906
    44173 8yf9:C (3.12) BS01 CA N/A N/A Q9E6H7 39087906
    44174 8yf9:C (3.12) BS02 CA N/A N/A Q9E6H7 39087906
    44175 8yib:A (2.27) BS03 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    44176 8yib:B (2.27) BS04 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    44177 8yk5:A (2.1) BS01 CA 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    44178 8yk5:B (2.1) BS01 CA 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    44179 8yku:A (2.17) BS01 CA N/A N/A A0A232BM78 N/A
    44180 8yku:A (2.17) BS02 CA N/A N/A A0A232BM78 N/A
    44181 8yku:A (2.17) BS03 CA N/A N/A A0A232BM78 N/A
    44182 8yku:A (2.17) BS04 CA N/A N/A A0A232BM78 N/A
    44183 8yku:A (2.17) BS05 CA N/A N/A A0A232BM78 N/A
    44184 8yku:A (2.17) BS06 CA N/A N/A A0A232BM78 N/A
    44185 8ys2:M (5.2) BS01 CA N/A N/A P98155 39127734
    44186 8ys2:M (5.2) BS02 CA N/A N/A P98155 39127734
    44187 8ys2:N (5.2) BS01 CA N/A N/A P98155 39127734
    44188 8ys2:N (5.2) BS02 CA N/A N/A P98155 39127734
    44189 8ys2:O (5.2) BS01 CA N/A N/A P98155 39127734
    44190 8ys2:O (5.2) BS02 CA N/A N/A P98155 39127734
    44191 8ys2:P (5.2) BS01 CA N/A N/A P98155 39127734
    44192 8ys2:P (5.2) BS02 CA N/A N/A P98155 39127734
    44193 8ys4:M (4.8) BS01 CA N/A N/A P98155 39127734
    44194 8ys4:N (4.8) BS01 CA N/A N/A P98155 39127734
    44195 8ys4:O (4.8) BS01 CA N/A N/A P98155 39127734
    44196 8ys4:P (4.8) BS01 CA N/A N/A P98155 39127734
    44197 8ys4:Q (4.8) BS01 CA N/A N/A P98155 39127734
    44198 8ys4:R (4.8) BS01 CA N/A N/A P98155 39127734
    44199 8ys4:S (4.8) BS01 CA N/A N/A P98155 39127734
    44200 8ys4:T (4.8) BS01 CA N/A N/A P98155 39127734
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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