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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43801 8v7d:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    43802 8v7h:A (1.68) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    43803 8v80:A (2.34) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43804 8v80:B (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43805 8v80:C (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43806 8v80:D (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43807 8v80:E (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43808 8v82:A (2.61) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43809 8v82:B (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43810 8v82:C (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43811 8v82:D (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43812 8v82:E (2.61) BS04 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43813 8v88:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43814 8v88:B (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43815 8v88:C (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43816 8v88:D (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43817 8v88:E (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43818 8v8a:A (2.19) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43819 8v8a:B (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43820 8v8a:C (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43821 8v8a:D (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43822 8v8a:E (2.19) BS04 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43823 8v8c:B (3.29) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43824 8v8d:B (3.31) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43825 8v8d:C (3.31) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    43826 8v9h:A (1.5) BS02 CA 3.5.2.6 GO:0008800 ... Q09HD0 38511828
    43827 8vdk:A (1.8) BS01 CA N/A N/A Q99W47 N/A
    43828 8vdk:A (1.8) BS02 CA N/A N/A Q99W47 N/A
    43829 8vdk:A (1.8) BS03 CA N/A N/A Q99W47 N/A
    43830 8vdk:A (1.8) BS04 CA N/A N/A Q99W47 N/A
    43831 8vdk:A (1.8) BS05 CA N/A N/A Q99W47 N/A
    43832 8vha:A (2.28) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    43833 8vhd:A (2.38) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    43834 8vhd:D (2.38) BS03 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    43835 8vhe:A (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    43836 8vhe:B (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    43837 8vhe:C (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    43838 8vhe:D (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    43839 8vjk:A (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    43840 8vjk:B (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    43841 8vjk:C (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    43842 8vjk:D (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    43843 8vk4:A (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    43844 8vk4:B (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    43845 8vk4:C (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    43846 8vk4:D (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    43847 8vk4:I (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    43848 8vk4:I (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    43849 8vk4:J (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    43850 8vk4:J (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    43851 8vk4:K (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    43852 8vk4:K (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    43853 8vk4:L (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    43854 8vk4:L (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    43855 8vk4:M (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    43856 8vk4:M (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    43857 8vk4:N (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    43858 8vk4:N (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    43859 8vk4:O (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    43860 8vk4:O (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    43861 8vk4:P (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    43862 8vk4:P (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    43863 8vs6:A (2.73) BS02 CA N/A N/A P06756 N/A
    43864 8vs6:A (2.73) BS03 CA N/A N/A P06756 N/A
    43865 8vs6:A (2.73) BS04 CA N/A N/A P06756 N/A
    43866 8vs6:A (2.73) BS05 CA N/A N/A P06756 N/A
    43867 8vs6:B (2.73) BS02 CA N/A N/A P26012 N/A
    43868 8vsd:A (3.2) BS01 CA N/A N/A P06756 N/A
    43869 8vsd:A (3.2) BS02 CA N/A N/A P06756 N/A
    43870 8vsd:A (3.2) BS03 CA N/A N/A P06756 N/A
    43871 8vsd:A (3.2) BS04 CA N/A N/A P06756 N/A
    43872 8vsd:B (3.2) BS01 CA N/A N/A P26012 N/A
    43873 8vw0:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43874 8vw0:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43875 8vw0:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43876 8vw0:A (1.7) BS05 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43877 8vw1:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43878 8vw1:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43879 8vw1:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43880 8vw2:A (1.95) BS01 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43881 8vw2:A (1.95) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43882 8vw2:A (1.95) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    43883 8vw5:A (1.76) BS02 CA N/A N/A Q13191 38894924
    43884 8vw5:B (1.76) BS03 CA N/A N/A Q13191 38894924
    43885 8w41:B (3.54) BS01 CA ? GO:0000086 ... P0DP26 38331992
    43886 8w41:B (3.54) BS02 CA ? GO:0000086 ... P0DP26 38331992
    43887 8w41:B (3.54) BS03 CA ? GO:0000086 ... P0DP26 38331992
    43888 8w41:B (3.54) BS04 CA ? GO:0000086 ... P0DP26 38331992
    43889 8w4g:A (2.15) BS01 CA N/A N/A N/A 38938812
    43890 8w4i:A (2.9) BS01 CA N/A N/A N/A 38938812
    43891 8w4n:A (3.1) BS03 CA N/A N/A N/A 38938812
    43892 8w5s:A (2.1162) BS01 CA N/A N/A P20073 N/A
    43893 8w5s:A (2.1162) BS02 CA N/A N/A P20073 N/A
    43894 8w5s:A (2.1162) BS03 CA N/A N/A P20073 N/A
    43895 8w5s:A (2.1162) BS04 CA N/A N/A P20073 N/A
    43896 8w5s:A (2.1162) BS05 CA N/A N/A P20073 N/A
    43897 8w5s:A (2.1162) BS06 CA N/A N/A P20073 N/A
    43898 8w5s:A (2.1162) BS07 CA N/A N/A P20073 N/A
    43899 8w5s:B (2.1162) BS01 CA N/A N/A P20073 N/A
    43900 8w5s:B (2.1162) BS02 CA N/A N/A P20073 N/A
    43901 8w5s:B (2.1162) BS03 CA N/A N/A P20073 N/A
    43902 8w5s:B (2.1162) BS04 CA N/A N/A P20073 N/A
    43903 8w5s:B (2.1162) BS05 CA N/A N/A P20073 N/A
    43904 8w5s:B (2.1162) BS06 CA N/A N/A P20073 N/A
    43905 8w5s:B (2.1162) BS07 CA N/A N/A P20073 N/A
    43906 8w5s:B (2.1162) BS08 CA N/A N/A P20073 N/A
    43907 8w5s:C (2.1162) BS01 CA N/A N/A P20073 N/A
    43908 8w5s:C (2.1162) BS02 CA N/A N/A P20073 N/A
    43909 8w5s:C (2.1162) BS03 CA N/A N/A P20073 N/A
    43910 8w5s:C (2.1162) BS04 CA N/A N/A P20073 N/A
    43911 8w5s:C (2.1162) BS05 CA N/A N/A P20073 N/A
    43912 8w5s:C (2.1162) BS06 CA N/A N/A P20073 N/A
    43913 8w5s:C (2.1162) BS07 CA N/A N/A P20073 N/A
    43914 8w5s:C (2.1162) BS08 CA N/A N/A P20073 N/A
    43915 8w5s:C (2.1162) BS09 CA N/A N/A P20073 N/A
    43916 8w5s:C (2.1162) BS10 CA N/A N/A P20073 N/A
    43917 8w5s:C (2.1162) BS11 CA N/A N/A P20073 N/A
    43918 8wa2:A (3.0) BS31 CA ? N/A A8J9H7 38552612
    43919 8wa2:B (3.0) BS40 CA ? N/A A8J9H7 38552612
    43920 8wa2:C (3.0) BS18 CA ? N/A A8J9H7 38552612
    43921 8wa2:D (3.0) BS25 CA ? N/A A8J9H7 38552612
    43922 8wa2:E (3.0) BS32 CA ? N/A A8J9H7 38552612
    43923 8wa2:F (3.0) BS34 CA ? N/A A8J9H7 38552612
    43924 8wa8:A (1.48) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    43925 8wa9:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    43926 8wa9:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    43927 8waa:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    43928 8waa:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    43929 8wb3:A (2.49) BS03 CA N/A N/A P02794 N/A
    43930 8wd0:A (2.6) BS02 CA N/A GO:0000226 ... P81947 38905886
    43931 8wd0:C (2.6) BS02 CA N/A GO:0000226 ... P81947 38905886
    43932 8wdq:A (2.2) BS02 CA N/A N/A Q9HXI4 N/A
    43933 8wdq:A (2.2) BS03 CA N/A N/A Q9HXI4 N/A
    43934 8wdq:B (2.2) BS02 CA N/A N/A Q9HXI4 N/A
    43935 8wdq:B (2.2) BS03 CA N/A N/A Q9HXI4 N/A
    43936 8wdu:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43937 8wdu:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43938 8wdu:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43939 8wdu:U (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    43940 8wdu:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    43941 8wdu:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43942 8wdv:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43943 8wdv:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43944 8wdv:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43945 8wdv:U (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43946 8wdv:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    43947 8wdv:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    43948 8we6:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    43949 8we6:D (2.9) BS01 CA ? N/A P54289 37972591
    43950 8we7:A (3.2) BS01 CA ? GO:0002520 ... Q13936 37972591
    43951 8we7:D (3.2) BS01 CA ? N/A P54289 37972591
    43952 8we8:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    43953 8we8:D (2.9) BS01 CA ? N/A P54289 37972591
    43954 8we9:A (3.0) BS01 CA ? GO:0002520 ... Q13936 37972591
    43955 8we9:D (3.0) BS01 CA ? N/A P54289 37972591
    43956 8wea:D (3.2) BS01 CA ? N/A P54289 37972591
    43957 8wg0:A (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43958 8wg0:B (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43959 8wg0:C (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43960 8wg0:D (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43961 8wg1:A (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43962 8wg1:B (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43963 8wg1:C (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43964 8wg1:D (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43965 8wg2:A (2.45) BS04 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43966 8wg2:B (2.45) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43967 8wg2:C (2.45) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43968 8wg2:D (2.45) BS04 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    43969 8wky:A (2.9) BS02 CA N/A N/A P32245 38345933
    43970 8wkz:A (3.3) BS02 CA N/A N/A P32245 38345933
    43971 8wmg:A (1.97) BS05 CA ? GO:0030246 ... P02866 N/A
    43972 8wmg:B (1.97) BS02 CA ? GO:0030246 ... P02866 N/A
    43973 8wmk:A (2.17) BS04 CA ? GO:0030246 ... P02866 N/A
    43974 8wmk:B (2.17) BS02 CA ? GO:0030246 ... P02866 N/A
    43975 8woq:A (2.85) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    43976 8woq:B (2.85) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    43977 8wor:A (2.66) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    43978 8wor:B (2.66) BS02 CA ? GO:0016020 ... Q9NXL6 38378654
    43979 8wpg:A (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    43980 8wpg:B (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    43981 8wpu:A (3.1) BS02 CA ? GO:0004930 ... P41180 37919470
    43982 8wpu:B (3.1) BS03 CA ? GO:0004930 ... P41180 37919470
    43983 8wql:K1 (3.5) BS03 CA N/A N/A N/A N/A
    43984 8wql:KD (3.5) BS03 CA N/A N/A N/A N/A
    43985 8wql:KE (3.5) BS03 CA N/A N/A N/A N/A
    43986 8wql:U1 (3.5) BS01 CA N/A N/A N/A N/A
    43987 8wql:UD (3.5) BS01 CA N/A N/A N/A N/A
    43988 8wql:UE (3.5) BS01 CA N/A N/A N/A N/A
    43989 8wql:V1 (3.5) BS02 CA N/A N/A N/A N/A
    43990 8wql:VD (3.5) BS02 CA N/A N/A N/A N/A
    43991 8wql:VE (3.5) BS02 CA N/A N/A N/A N/A
    43992 8wql:k1 (3.5) BS03 CA N/A N/A N/A N/A
    43993 8wql:kD (3.5) BS03 CA N/A N/A N/A N/A
    43994 8wql:kE (3.5) BS03 CA N/A N/A N/A N/A
    43995 8wql:u1 (3.5) BS01 CA N/A N/A N/A N/A
    43996 8wql:uD (3.5) BS01 CA N/A N/A N/A N/A
    43997 8wql:uE (3.5) BS01 CA N/A N/A N/A N/A
    43998 8wql:v1 (3.5) BS02 CA N/A N/A N/A N/A
    43999 8wql:vD (3.5) BS02 CA N/A N/A N/A N/A
    44000 8wql:vE (3.5) BS02 CA N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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