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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 1qib:A (2.8) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    4202 1qib:A (2.8) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    4203 1qic:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4204 1qic:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4205 1qic:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4206 1qic:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4207 1qic:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4208 1qic:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4209 1qic:C (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4210 1qic:C (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4211 1qic:C (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4212 1qic:D (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4213 1qic:D (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4214 1qic:D (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4215 1qiv:A (2.64) BS01 CA ? GO:0000922 ... P62157 10731425
    4216 1qiv:A (2.64) BS02 CA ? GO:0000922 ... P62157 10731425
    4217 1qiv:A (2.64) BS03 CA ? GO:0000922 ... P62157 10731425
    4218 1qiv:A (2.64) BS04 CA ? GO:0000922 ... P62157 10731425
    4219 1qiw:A (2.3) BS01 CA ? GO:0000922 ... P62157 10731425
    4220 1qiw:A (2.3) BS02 CA ? GO:0000922 ... P62157 10731425
    4221 1qiw:A (2.3) BS03 CA ? GO:0000922 ... P62157 10731425
    4222 1qiw:A (2.3) BS04 CA ? GO:0000922 ... P62157 10731425
    4223 1qiw:B (2.3) BS01 CA ? GO:0000922 ... P62157 10731425
    4224 1qiw:B (2.3) BS02 CA ? GO:0000922 ... P62157 10731425
    4225 1qiw:B (2.3) BS03 CA ? GO:0000922 ... P62157 10731425
    4226 1qiw:B (2.3) BS04 CA ? GO:0000922 ... P62157 10731425
    4227 1qix:B (1.9) BS02 CA 3.4.21.36 GO:0004252 ... P00772 9187653
    4228 1ql7:A (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11921406
    4229 1ql8:A (3.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11921406
    4230 1ql9:A (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    4231 1qlb:A (2.33) BS03 CA 1.3.5.1 GO:0000104 ... P17412 10586875
    4232 1qlb:D (2.33) BS03 CA 1.3.5.1 GO:0000104 ... P17412 10586875
    4233 1qle:A (3.0) BS04 CA 7.1.1.9 GO:0004129 ... P98002 10559205
    4234 1qlg:A (2.2) BS01 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    4235 1qlg:A (2.2) BS02 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    4236 1qlg:A (2.2) BS03 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    4237 1qlk:A (-1.00) BS01 CA ? GO:0001726 ... P04631 9485423
    4238 1qlk:A (-1.00) BS02 CA ? GO:0001726 ... P04631 9485423
    4239 1qlk:B (-1.00) BS01 CA ? GO:0001726 ... P04631 9485423
    4240 1qlk:B (-1.00) BS02 CA ? GO:0001726 ... P04631 9485423
    4241 1qls:A (2.3) BS02 CA ? GO:0005509 ... P31950 10673436
    4242 1qls:A (2.3) BS03 CA ? GO:0005509 ... P31950 10673436
    4243 1qmd:A (2.2) BS03 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    4244 1qmd:A (2.2) BS04 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    4245 1qmd:A (2.2) BS05 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    4246 1qmd:B (2.2) BS03 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    4247 1qmd:B (2.2) BS04 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    4248 1qmd:B (2.2) BS05 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    4249 1qmo:E (3.5) BS01 CA ? GO:0030246 ... Q9ZTA9 10843844
    4250 1qmo:F (3.5) BS01 CA ? GO:0030246 ... Q9ZTA9 10843844
    4251 1qmo:G (3.5) BS01 CA ? GO:0030246 ... Q9ZTA9 10843844
    4252 1qmo:H (3.5) BS01 CA ? GO:0030246 ... Q9ZTA9 10843844
    4253 1qmp:A (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    4254 1qmp:B (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    4255 1qmp:C (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    4256 1qmp:D (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    4257 1qni:A (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    4258 1qni:A (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    4259 1qni:B (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    4260 1qni:B (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    4261 1qni:C (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    4262 1qni:C (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    4263 1qni:D (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    4264 1qni:D (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    4265 1qni:E (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    4266 1qni:E (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    4267 1qni:F (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    4268 1qni:F (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    4269 1qnw:A (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    4270 1qnw:B (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    4271 1qnw:C (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    4272 1qnw:D (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    4273 1qny:A (1.8) BS02 CA ? GO:0030246 ... P02866 10771422
    4274 1qo4:A (3.0) BS02 CA 1.11.1.7 GO:0002215 ... Q42578 11551197
    4275 1qo4:A (3.0) BS03 CA 1.11.1.7 GO:0002215 ... Q42578 11551197
    4276 1qoo:A (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    4277 1qoo:B (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    4278 1qoo:C (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    4279 1qoo:D (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    4280 1qos:A (2.95) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    4281 1qos:B (2.95) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    4282 1qot:A (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    4283 1qot:B (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    4284 1qot:C (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    4285 1qot:D (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    4286 1qpa:A (1.8) BS03 CA 1.11.1.14 GO:0000302 ... P11542 10024453
    4287 1qpa:A (1.8) BS04 CA 1.11.1.14 GO:0000302 ... P11542 10024453
    4288 1qpa:B (1.8) BS06 CA 1.11.1.14 GO:0000302 ... P11542 10024453
    4289 1qpa:B (1.8) BS07 CA 1.11.1.14 GO:0000302 ... P11542 10024453
    4290 1qpk:A (2.0) BS05 CA 3.2.1.60 GO:0005975 ... P13507 10556241
    4291 1qpk:A (2.0) BS06 CA 3.2.1.60 GO:0005975 ... P13507 10556241
    4292 1qq9:A (1.53) BS03 CA 3.4.11.24 GO:0004177 ... P80561 10771423
    4293 1qqj:A (1.55) BS01 CA 3.7.1.2 GO:0003824 ... P35505 10508789
    4294 1qqj:B (1.55) BS01 CA 3.7.1.2 GO:0003824 ... P35505 10508789
    4295 1qqu:A (1.63) BS01 CA 3.4.21.4 GO:0004252 ... P00761 10561533
    4296 1qr3:E (1.6) BS02 CA 3.4.21.36 GO:0004252 ... P00772 10738204
    4297 1qs7:A (1.8) BS02 CA ? GO:0005509 ... A0MMD0 N/A
    4298 1qs7:A (1.8) BS03 CA ? GO:0005509 ... A0MMD0 N/A
    4299 1qs7:A (1.8) BS04 CA ? GO:0005509 ... A0MMD0 N/A
    4300 1qs7:A (1.8) BS05 CA ? GO:0005509 ... A0MMD0 N/A
    4301 1qs7:C (1.8) BS02 CA ? GO:0005509 ... A0MMD0 N/A
    4302 1qs7:C (1.8) BS03 CA ? GO:0005509 ... A0MMD0 N/A
    4303 1qs7:C (1.8) BS04 CA ? GO:0005509 ... A0MMD0 N/A
    4304 1qs7:C (1.8) BS05 CA ? GO:0005509 ... A0MMD0 N/A
    4305 1qtx:A (1.65) BS02 CA ? GO:0005509 ... A0MMD0 N/A
    4306 1qtx:A (1.65) BS03 CA ? GO:0005509 ... A0MMD0 N/A
    4307 1qtx:A (1.65) BS04 CA ? GO:0005509 ... A0MMD0 N/A
    4308 1qtx:A (1.65) BS05 CA ? GO:0005509 ... A0MMD0 N/A
    4309 1qu0:A (2.35) BS01 CA ? N/A Q60675 10619025
    4310 1qu0:B (2.35) BS01 CA ? N/A Q60675 10619025
    4311 1qu0:C (2.35) BS01 CA ? N/A Q60675 10619025
    4312 1qu0:D (2.35) BS01 CA ? N/A Q60675 10619025
    4313 1qv1:A (1.1) BS01 CA 1.13.12.5 GO:0005509 ... Q27709 14592432
    4314 1qvi:Z (2.54) BS01 CA ? GO:0005509 ... P07291 14656445
    4315 1qx2:A (1.44) BS01 CA ? GO:0005499 ... P02633 15137763
    4316 1qx2:A (1.44) BS02 CA ? GO:0005499 ... P02633 15137763
    4317 1qx2:B (1.44) BS01 CA ? GO:0005499 ... P02633 15137763
    4318 1qx2:B (1.44) BS02 CA ? GO:0005499 ... P02633 15137763
    4319 1r0r:E (1.1) BS01 CA 3.4.21.62 GO:0004252 ... P00780 12888355
    4320 1r0r:E (1.1) BS02 CA 3.4.21.62 GO:0004252 ... P00780 12888355
    4321 1r0r:E (1.1) BS03 CA 3.4.21.62 GO:0004252 ... P00780 12888355
    4322 1r0r:E (1.1) BS04 CA 3.4.21.62 GO:0004252 ... P00780 12888355
    4323 1r13:A (2.1) BS01 CA ? N/A P08427 12913002
    4324 1r17:A (1.86) BS02 CA ? GO:0005618 ... Q9KI13 14567919
    4325 1r17:B (1.86) BS02 CA ? GO:0005618 ... Q9KI13 14567919
    4326 1r1z:A (2.4) BS01 CA ? GO:0016020 ... Q62902 14643651
    4327 1r1z:A (2.4) BS02 CA ? GO:0016020 ... Q62902 14643651
    4328 1r1z:B (2.4) BS01 CA ? GO:0016020 ... Q62902 14643651
    4329 1r1z:B (2.4) BS02 CA ? GO:0016020 ... Q62902 14643651
    4330 1r1z:C (2.4) BS01 CA ? GO:0016020 ... Q62902 14643651
    4331 1r1z:C (2.4) BS02 CA ? GO:0016020 ... Q62902 14643651
    4332 1r1z:D (2.4) BS01 CA ? GO:0016020 ... Q62902 14643651
    4333 1r1z:D (2.4) BS02 CA ? GO:0016020 ... Q62902 14643651
    4334 1r2u:A (-1.00) BS01 CA ? GO:0005509 ... Q7ZZB9 15109253
    4335 1r4f:A (2.3) BS01 CA 3.2.2.1 GO:0006139 ... Q9GPQ4 15050818
    4336 1r4f:B (2.3) BS01 CA 3.2.2.1 GO:0006139 ... Q9GPQ4 15050818
    4337 1r54:A (1.85) BS02 CA 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    4338 1r55:A (1.58) BS02 CA 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    4339 1r64:A (2.2) BS02 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    4340 1r64:A (2.2) BS03 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    4341 1r64:A (2.2) BS04 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    4342 1r64:B (2.2) BS03 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    4343 1r64:B (2.2) BS04 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    4344 1r64:B (2.2) BS05 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    4345 1r6p:A (-1.00) BS01 CA ? GO:0005509 ... Q7ZZB9 15109253
    4346 1r6v:A (1.7) BS01 CA 3.4.21.- GO:0004252 ... Q93LQ6 14687574
    4347 1r7m:A (2.25) BS03 CA 3.1.-.- GO:0004519 ... P03882 14636596
    4348 1r7m:A (2.25) BS04 CA 3.1.-.- GO:0004519 ... P03882 14636596
    4349 1r7m:B (2.25) BS03 CA 3.1.-.- GO:0004519 ... P03882 14636596
    4350 1r7m:B (2.25) BS04 CA 3.1.-.- GO:0004519 ... P03882 14636596
    4351 1r8l:A (2.6) BS01 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 15312766
    4352 1r8l:B (2.6) BS01 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 15312766
    4353 1r9j:A (2.22) BS01 CA 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    4354 1r9j:B (2.22) BS02 CA 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    4355 1ra1:A (1.9) BS01 CA 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    4356 1rc8:A (2.75) BS02 CA 2.7.1.78
    3.1.3.34
    GO:0005524 ... P06855 14754987
    4357 1rdi:1 (1.8) BS02 CA ? N/A P08661 8557671
    4358 1rdi:1 (1.8) BS03 CA ? N/A P08661 8557671
    4359 1rdi:2 (1.8) BS02 CA ? N/A P08661 8557671
    4360 1rdi:2 (1.8) BS03 CA ? N/A P08661 8557671
    4361 1rdj:1 (1.8) BS02 CA ? N/A P08661 8557671
    4362 1rdj:1 (1.8) BS03 CA ? N/A P08661 8557671
    4363 1rdj:2 (1.8) BS02 CA ? N/A P08661 8557671
    4364 1rdj:2 (1.8) BS03 CA ? N/A P08661 8557671
    4365 1rdk:1 (1.8) BS02 CA ? N/A P08661 8557671
    4366 1rdk:1 (1.8) BS03 CA ? N/A P08661 8557671
    4367 1rdk:2 (1.8) BS02 CA ? N/A P08661 8557671
    4368 1rdk:2 (1.8) BS03 CA ? N/A P08661 8557671
    4369 1rdl:1 (1.7) BS02 CA ? N/A P08661 8557671
    4370 1rdl:1 (1.7) BS03 CA ? N/A P08661 8557671
    4371 1rdl:2 (1.7) BS02 CA ? N/A P08661 8557671
    4372 1rdl:2 (1.7) BS03 CA ? N/A P08661 8557671
    4373 1rdm:1 (1.9) BS03 CA ? N/A P08661 8557671
    4374 1rdm:1 (1.9) BS04 CA ? N/A P08661 8557671
    4375 1rdm:2 (1.9) BS02 CA ? N/A P08661 8557671
    4376 1rdm:2 (1.9) BS03 CA ? N/A P08661 8557671
    4377 1rdn:1 (1.8) BS01 CA ? N/A P08661 8557671
    4378 1rdn:1 (1.8) BS02 CA ? N/A P08661 8557671
    4379 1rdn:2 (1.8) BS01 CA ? N/A P08661 8557671
    4380 1rdn:2 (1.8) BS02 CA ? N/A P08661 8557671
    4381 1rdo:1 (1.7) BS01 CA ? N/A P08661 8557671
    4382 1rdo:1 (1.7) BS02 CA ? N/A P08661 8557671
    4383 1rdo:2 (1.7) BS01 CA ? N/A P08661 8557671
    4384 1rdo:2 (1.7) BS02 CA ? N/A P08661 8557671
    4385 1rdr:A (2.4) BS01 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 9309225
    4386 1re3:B (2.45) BS01 CA ? GO:0005102 ... P02675 14992584
    4387 1re3:C (2.45) BS02 CA ? GO:0005102 ... P02679 14992584
    4388 1re3:C (2.45) BS03 CA ? GO:0005102 ... P02679 14992584
    4389 1re3:E (2.45) BS01 CA ? GO:0005102 ... P02675 14992584
    4390 1re3:F (2.45) BS02 CA ? GO:0005102 ... P02679 14992584
    4391 1re4:B (2.7) BS01 CA ? GO:0005102 ... P02675 14992584
    4392 1re4:B (2.7) BS02 CA ? GO:0005102 ... P02675 14992584
    4393 1re4:C (2.7) BS01 CA ? GO:0005102 ... P02679 14992584
    4394 1re4:C (2.7) BS02 CA ? GO:0005102 ... P02679 14992584
    4395 1re4:E (2.7) BS01 CA ? GO:0005102 ... P02675 14992584
    4396 1re4:F (2.7) BS01 CA ? GO:0005102 ... P02679 14992584
    4397 1re4:F (2.7) BS02 CA ? GO:0005102 ... P02679 14992584
    4398 1rec:A (1.9) BS01 CA ? GO:0001750 ... P21457 8242744
    4399 1rf0:B (2.81) BS01 CA ? GO:0005102 ... P02675 14992585
    4400 1rf0:B (2.81) BS02 CA ? GO:0005102 ... P02675 14992585

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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