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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43201 8src:C (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    43202 8src:C (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    43203 8src:C (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    43204 8src:D (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    43205 8src:D (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    43206 8src:D (2.92) BS07 CA ? GO:0005216 ... F2UB89 38773335
    43207 8src:D (2.92) BS08 CA ? GO:0005216 ... F2UB89 38773335
    43208 8srk:A (4.14) BS02 CA ? GO:0005216 ... F2UB89 N/A
    43209 8srk:B (4.14) BS03 CA ? GO:0005216 ... F2UB89 N/A
    43210 8srk:C (4.14) BS03 CA ? GO:0005216 ... F2UB89 N/A
    43211 8srk:D (4.14) BS05 CA ? GO:0005216 ... F2UB89 N/A
    43212 8ssk:A (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    43213 8ssk:B (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    43214 8ssk:C (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    43215 8ssk:D (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    43216 8ssz:A (2.64) BS02 CA ? GO:0004888 ... P43681 38454578
    43217 8ssz:D (2.64) BS02 CA ? GO:0004888 ... P43681 38454578
    43218 8st1:A (3.41) BS02 CA ? GO:0004888 ... P43681 38454578
    43219 8st1:D (3.41) BS02 CA ? GO:0004888 ... P43681 38454578
    43220 8st3:A (2.93) BS02 CA ? GO:0004888 ... P43681 38454578
    43221 8st3:D (2.93) BS02 CA ? GO:0004888 ... P43681 38454578
    43222 8sun:A (3.12) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43223 8sun:B (3.12) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43224 8sun:B (3.12) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    43225 8sur:A (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43226 8sur:A (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    43227 8sur:B (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43228 8sur:B (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    43229 8sur:B (3.1) BS03 CA ? GO:0002407 ... Q6P9J9 37573365
    43230 8sx0:B (1.65) BS01 CA ? N/A P12255 N/A
    43231 8szf:A (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    43232 8szf:B (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    43233 8szg:A (3.6) BS02 CA ? GO:0004930 ... P41180 38326620
    43234 8szh:A (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    43235 8szh:B (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    43236 8szi:A (3.5) BS01 CA ? GO:0004930 ... P41180 38326620
    43237 8szi:B (3.5) BS02 CA ? GO:0004930 ... P41180 38326620
    43238 8szo:A (2.5) BS02 CA N/A GO:0030246 ... N/A 28693997
    43239 8t2u:A (3.1) BS02 CA ? GO:0001525 ... P08514 37443315
    43240 8t2u:A (3.1) BS03 CA ? GO:0001525 ... P08514 37443315
    43241 8t2u:A (3.1) BS04 CA ? GO:0001525 ... P08514 37443315
    43242 8t2u:A (3.1) BS05 CA ? GO:0001525 ... P08514 37443315
    43243 8t2u:B (3.1) BS03 CA ? GO:0001618 ... P05106 37443315
    43244 8t2u:B (3.1) BS04 CA ? GO:0001618 ... P05106 37443315
    43245 8t2v:A (3.4) BS01 CA ? GO:0001525 ... P08514 37443315
    43246 8t2v:A (3.4) BS02 CA ? GO:0001525 ... P08514 37443315
    43247 8t2v:A (3.4) BS03 CA ? GO:0001525 ... P08514 37443315
    43248 8t2v:A (3.4) BS04 CA ? GO:0001525 ... P08514 37443315
    43249 8t2v:A (3.4) BS05 CA ? GO:0001525 ... P08514 37443315
    43250 8t2v:B (3.4) BS02 CA ? GO:0001618 ... P05106 37443315
    43251 8t2v:B (3.4) BS03 CA ? GO:0001618 ... P05106 37443315
    43252 8t5n:A (1.65) BS01 CA 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    43253 8t7c:A (2.55) BS01 CA N/A N/A P16885 N/A
    43254 8tag:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43255 8tag:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43256 8tag:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    43257 8tai:A (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43258 8tai:B (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43259 8tai:B (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    43260 8tal:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43261 8tal:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    43262 8tal:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    43263 8tav:A (1.39) BS04 CA N/A GO:0016020 ... Q2G025 N/A
    43264 8tav:A (1.39) BS05 CA N/A GO:0016020 ... Q2G025 N/A
    43265 8tb2:A (1.88) BS01 CA ? N/A Q8NUV0 38568806
    43266 8tcf:A (2.9) BS01 CA ? GO:0007155 ... P06756 37704610
    43267 8tcf:A (2.9) BS02 CA ? GO:0007155 ... P06756 37704610
    43268 8tcf:A (2.9) BS03 CA ? GO:0007155 ... P06756 37704610
    43269 8tcf:A (2.9) BS04 CA ? GO:0007155 ... P06756 37704610
    43270 8tcf:B (2.9) BS01 CA ? N/A P26012 37704610
    43271 8tcg:A (3.4) BS01 CA ? GO:0007155 ... P06756 37704610
    43272 8tcg:A (3.4) BS02 CA ? GO:0007155 ... P06756 37704610
    43273 8tcg:A (3.4) BS03 CA ? GO:0007155 ... P06756 37704610
    43274 8tcg:A (3.4) BS04 CA ? GO:0007155 ... P06756 37704610
    43275 8ted:A (2.1) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    43276 8ted:A (2.1) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    43277 8ted:B (2.1) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    43278 8ted:B (2.1) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    43279 8ted:B (2.1) BS03 CA ? GO:0000160 ... A5FFU4 N/A
    43280 8tff:A (2.34) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    43281 8tff:A (2.34) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    43282 8tff:A (2.34) BS03 CA ? GO:0000160 ... A5FFU4 N/A
    43283 8tff:B (2.34) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    43284 8tff:B (2.34) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    43285 8tff:B (2.34) BS03 CA ? GO:0000160 ... A5FFU4 N/A
    43286 8tgt:C (2.5) BS01 CA N/A N/A P04003 N/A
    43287 8thp:A (2.6) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    43288 8thp:A (2.6) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    43289 8thp:B (2.6) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    43290 8thp:B (2.6) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    43291 8tkf:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    43292 8tkf:B (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    43293 8tkf:C (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    43294 8tkf:D (3.2) BS05 CA ? GO:0000822 ... Q14573 37898605
    43295 8tkg:A (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    43296 8tkg:A (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    43297 8tkg:B (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    43298 8tkg:B (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    43299 8tkg:C (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    43300 8tkg:C (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    43301 8tkg:D (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    43302 8tkg:D (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    43303 8tkp:B (2.9) BS01 CA ? GO:0000287 ... Q93640 38354260
    43304 8tkp:B (2.9) BS02 CA ? GO:0000287 ... Q93640 38354260
    43305 8tkp:E (2.9) BS01 CA ? GO:0000287 ... Q93640 38354260
    43306 8tkp:E (2.9) BS02 CA ? GO:0000287 ... Q93640 38354260
    43307 8tl9:A (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    43308 8tl9:B (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    43309 8tl9:C (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    43310 8tl9:D (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    43311 8tla:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    43312 8tla:B (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    43313 8tla:C (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    43314 8tla:D (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    43315 8tli:A (2.2) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    43316 8tli:A (2.2) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    43317 8tli:A (2.2) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    43318 8tli:A (2.2) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    43319 8tln:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    43320 8tln:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    43321 8tln:E (1.6) BS05 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    43322 8tln:E (1.6) BS06 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    43323 8tlq:A (3.53) BS03 CA 2.7.7.7 GO:0000166 ... P14284 38720088
    43324 8tlt:A (2.85) BS04 CA 2.7.7.7 GO:0000166 ... P14284 38720088
    43325 8toi:A (2.64) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43326 8toi:A (2.64) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43327 8toi:B (2.64) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43328 8toi:B (2.64) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43329 8tok:A (3.84) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43330 8tok:A (3.84) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43331 8tok:B (3.84) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43332 8tok:B (3.84) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43333 8tol:A (2.85) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43334 8tol:A (2.85) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43335 8tol:B (2.85) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43336 8tol:B (2.85) BS03 CA ? GO:0005254 ... C7Z7K1 38684930
    43337 8ton:A (1.94) BS01 CA N/A N/A Q99PJ1 N/A
    43338 8tow:K (2.14) BS03 CA N/A GO:0005737 ... P15819 38879008
    43339 8tow:U (2.14) BS01 CA N/A N/A Q55332 38879008
    43340 8tow:V (2.14) BS02 CA N/A N/A Q55013 38879008
    43341 8tow:k (2.14) BS03 CA N/A GO:0005737 ... P15819 38879008
    43342 8tow:u (2.14) BS01 CA N/A N/A Q55332 38879008
    43343 8tow:v (2.14) BS02 CA N/A N/A Q55013 38879008
    43344 8tpn:A (4.07) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43345 8tpn:A (4.07) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43346 8tpn:B (4.07) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43347 8tpn:B (4.07) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43348 8tpo:A (3.59) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43349 8tpo:A (3.59) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43350 8tpo:B (3.59) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43351 8tpo:B (3.59) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43352 8tpp:A (3.64) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43353 8tpp:A (3.64) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43354 8tpp:B (3.64) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43355 8tpp:B (3.64) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43356 8tpq:A (3.35) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43357 8tpq:A (3.35) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43358 8tpq:B (3.35) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43359 8tpq:B (3.35) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43360 8tpr:A (2.85) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43361 8tpr:A (2.85) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43362 8tpr:B (2.85) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43363 8tpr:B (2.85) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43364 8tps:A (2.97) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43365 8tps:B (2.97) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43366 8tpt:A (3.01) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43367 8tpt:A (3.01) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43368 8tpt:B (3.01) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    43369 8tpt:B (3.01) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    43370 8tqb:A (3.3) BS02 CA N/A N/A P31422 37645747
    43371 8tqb:A (3.3) BS03 CA N/A N/A P31422 37645747
    43372 8tqb:B (3.3) BS02 CA N/A N/A P31422 37645747
    43373 8tqb:B (3.3) BS03 CA N/A N/A P31422 37645747
    43374 8tr2:A (3.5) BS02 CA N/A N/A P31422 37645747
    43375 8tr2:A (3.5) BS03 CA N/A N/A P31422 37645747
    43376 8tr2:B (3.5) BS02 CA N/A N/A P31422 37645747
    43377 8tr2:B (3.5) BS03 CA N/A N/A P31422 37645747
    43378 8tri:A (3.716) BS01 CA N/A N/A Q99PF4 N/A
    43379 8tri:A (3.716) BS02 CA N/A N/A Q99PF4 N/A
    43380 8tri:A (3.716) BS03 CA N/A N/A Q99PF4 N/A
    43381 8tri:A (3.716) BS04 CA N/A N/A Q99PF4 N/A
    43382 8tri:A (3.716) BS05 CA N/A N/A Q99PF4 N/A
    43383 8tri:A (3.716) BS06 CA N/A N/A Q99PF4 N/A
    43384 8tri:B (3.716) BS01 CA N/A N/A Q99PF4 N/A
    43385 8tri:B (3.716) BS02 CA N/A N/A Q99PF4 N/A
    43386 8tri:B (3.716) BS03 CA N/A N/A Q99PF4 N/A
    43387 8tri:B (3.716) BS04 CA N/A N/A Q99PF4 N/A
    43388 8tri:B (3.716) BS05 CA N/A N/A Q99PF4 N/A
    43389 8tri:B (3.716) BS06 CA N/A N/A Q99PF4 N/A
    43390 8tri:C (3.716) BS01 CA N/A N/A Q99PF4 N/A
    43391 8tri:C (3.716) BS02 CA N/A N/A Q99PF4 N/A
    43392 8tri:C (3.716) BS03 CA N/A N/A Q99PF4 N/A
    43393 8tri:C (3.716) BS04 CA N/A N/A Q99PF4 N/A
    43394 8tri:C (3.716) BS05 CA N/A N/A Q99PF4 N/A
    43395 8tri:C (3.716) BS06 CA N/A N/A Q99PF4 N/A
    43396 8ts0:A (1.7) BS01 CA N/A N/A P07306 38847394
    43397 8ts0:A (1.7) BS02 CA N/A N/A P07306 38847394
    43398 8ts0:A (1.7) BS03 CA N/A N/A P07306 38847394
    43399 8tx6:A (1.56) BS02 CA N/A GO:0005576 ... P0CS93 N/A
    43400 8tzo:C (3.1) BS05 CA ? GO:0005509 ... P27797 37852257
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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