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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42401 8jx8:A (3.3) BS05 CA N/A N/A P98158 38771880
    42402 8jx8:A (3.3) BS06 CA N/A N/A P98158 38771880
    42403 8jx8:A (3.3) BS07 CA N/A N/A P98158 38771880
    42404 8jx8:A (3.3) BS08 CA N/A N/A P98158 38771880
    42405 8jx8:B (3.3) BS05 CA N/A N/A P98158 38771880
    42406 8jx8:B (3.3) BS06 CA N/A N/A P98158 38771880
    42407 8jx8:B (3.3) BS07 CA N/A N/A P98158 38771880
    42408 8jx8:B (3.3) BS08 CA N/A N/A P98158 38771880
    42409 8jx8:B (3.3) BS09 CA N/A N/A P98158 38771880
    42410 8jx9:B (3.8) BS02 CA N/A N/A P98158 38771880
    42411 8jx9:B (3.8) BS03 CA N/A N/A P98158 38771880
    42412 8jx9:B (3.8) BS04 CA N/A N/A P98158 38771880
    42413 8jx9:B (3.8) BS05 CA N/A N/A P98158 38771880
    42414 8jx9:B (3.8) BS06 CA N/A N/A P98158 38771880
    42415 8jx9:B (3.8) BS07 CA N/A N/A P98158 38771880
    42416 8jx9:B (3.8) BS08 CA N/A N/A P98158 38771880
    42417 8jx9:B (3.8) BS09 CA N/A N/A P98158 38771880
    42418 8jx9:B (3.8) BS10 CA N/A N/A P98158 38771880
    42419 8jx9:B (3.8) BS11 CA N/A N/A P98158 38771880
    42420 8jx9:B (3.8) BS12 CA N/A N/A P98158 38771880
    42421 8jx9:B (3.8) BS13 CA N/A N/A P98158 38771880
    42422 8jx9:B (3.8) BS14 CA N/A N/A P98158 38771880
    42423 8jx9:B (3.8) BS15 CA N/A N/A P98158 38771880
    42424 8jx9:B (3.8) BS16 CA N/A N/A P98158 38771880
    42425 8jx9:B (3.8) BS17 CA N/A N/A P98158 38771880
    42426 8jx9:B (3.8) BS18 CA N/A N/A P98158 38771880
    42427 8jx9:B (3.8) BS19 CA N/A N/A P98158 38771880
    42428 8jx9:B (3.8) BS20 CA N/A N/A P98158 38771880
    42429 8jx9:B (3.8) BS21 CA N/A N/A P98158 38771880
    42430 8jxa:A (3.8) BS02 CA N/A N/A P98158 38771880
    42431 8jxa:A (3.8) BS03 CA N/A N/A P98158 38771880
    42432 8jxa:A (3.8) BS04 CA N/A N/A P98158 38771880
    42433 8jxa:A (3.8) BS05 CA N/A N/A P98158 38771880
    42434 8jxa:A (3.8) BS06 CA N/A N/A P98158 38771880
    42435 8jxa:A (3.8) BS07 CA N/A N/A P98158 38771880
    42436 8jxa:A (3.8) BS08 CA N/A N/A P98158 38771880
    42437 8jxa:A (3.8) BS09 CA N/A N/A P98158 38771880
    42438 8jxa:A (3.8) BS10 CA N/A N/A P98158 38771880
    42439 8jxa:A (3.8) BS11 CA N/A N/A P98158 38771880
    42440 8jxa:A (3.8) BS12 CA N/A N/A P98158 38771880
    42441 8jxa:A (3.8) BS13 CA N/A N/A P98158 38771880
    42442 8jxa:A (3.8) BS14 CA N/A N/A P98158 38771880
    42443 8jxa:A (3.8) BS15 CA N/A N/A P98158 38771880
    42444 8jxa:A (3.8) BS16 CA N/A N/A P98158 38771880
    42445 8jxa:A (3.8) BS17 CA N/A N/A P98158 38771880
    42446 8jxa:A (3.8) BS18 CA N/A N/A P98158 38771880
    42447 8jxa:A (3.8) BS19 CA N/A N/A P98158 38771880
    42448 8jxa:A (3.8) BS20 CA N/A N/A P98158 38771880
    42449 8jxb:A (3.7) BS01 CA N/A N/A P98158 38771880
    42450 8jxb:A (3.7) BS02 CA N/A N/A P98158 38771880
    42451 8jxb:A (3.7) BS03 CA N/A N/A P98158 38771880
    42452 8jxb:A (3.7) BS04 CA N/A N/A P98158 38771880
    42453 8jxb:A (3.7) BS05 CA N/A N/A P98158 38771880
    42454 8jxb:A (3.7) BS06 CA N/A N/A P98158 38771880
    42455 8jxb:B (3.7) BS03 CA N/A N/A P98158 38771880
    42456 8jxb:B (3.7) BS04 CA N/A N/A P98158 38771880
    42457 8jxb:B (3.7) BS05 CA N/A N/A P98158 38771880
    42458 8jxb:B (3.7) BS06 CA N/A N/A P98158 38771880
    42459 8jxb:B (3.7) BS07 CA N/A N/A P98158 38771880
    42460 8jxb:B (3.7) BS08 CA N/A N/A P98158 38771880
    42461 8jxb:B (3.7) BS09 CA N/A N/A P98158 38771880
    42462 8jxb:B (3.7) BS10 CA N/A N/A P98158 38771880
    42463 8jxb:B (3.7) BS11 CA N/A N/A P98158 38771880
    42464 8jxb:B (3.7) BS12 CA N/A N/A P98158 38771880
    42465 8jxb:B (3.7) BS13 CA N/A N/A P98158 38771880
    42466 8jxb:B (3.7) BS14 CA N/A N/A P98158 38771880
    42467 8jxc:A (3.7) BS02 CA N/A N/A P98158 38771880
    42468 8jxc:A (3.7) BS03 CA N/A N/A P98158 38771880
    42469 8jxc:A (3.7) BS04 CA N/A N/A P98158 38771880
    42470 8jxc:A (3.7) BS05 CA N/A N/A P98158 38771880
    42471 8jxc:A (3.7) BS06 CA N/A N/A P98158 38771880
    42472 8jxc:A (3.7) BS07 CA N/A N/A P98158 38771880
    42473 8jxc:A (3.7) BS08 CA N/A N/A P98158 38771880
    42474 8jxc:A (3.7) BS09 CA N/A N/A P98158 38771880
    42475 8jxc:A (3.7) BS10 CA N/A N/A P98158 38771880
    42476 8jxc:A (3.7) BS11 CA N/A N/A P98158 38771880
    42477 8jxc:A (3.7) BS12 CA N/A N/A P98158 38771880
    42478 8jxc:A (3.7) BS13 CA N/A N/A P98158 38771880
    42479 8jxc:A (3.7) BS14 CA N/A N/A P98158 38771880
    42480 8jxc:A (3.7) BS15 CA N/A N/A P98158 38771880
    42481 8jxc:A (3.7) BS16 CA N/A N/A P98158 38771880
    42482 8jxc:A (3.7) BS17 CA N/A N/A P98158 38771880
    42483 8jxc:A (3.7) BS18 CA N/A N/A P98158 38771880
    42484 8jxd:A (3.3) BS01 CA N/A N/A P98158 38771880
    42485 8jxd:A (3.3) BS02 CA N/A N/A P98158 38771880
    42486 8jxd:B (3.3) BS01 CA N/A N/A P98158 38771880
    42487 8jxd:B (3.3) BS02 CA N/A N/A P98158 38771880
    42488 8jxd:B (3.3) BS03 CA N/A N/A P98158 38771880
    42489 8jxd:B (3.3) BS04 CA N/A N/A P98158 38771880
    42490 8jxe:A (3.2) BS04 CA N/A N/A P98158 38771880
    42491 8jxe:A (3.2) BS05 CA N/A N/A P98158 38771880
    42492 8jxe:A (3.2) BS06 CA N/A N/A P98158 38771880
    42493 8jxe:A (3.2) BS07 CA N/A N/A P98158 38771880
    42494 8jxe:A (3.2) BS08 CA N/A N/A P98158 38771880
    42495 8jxe:A (3.2) BS09 CA N/A N/A P98158 38771880
    42496 8jxe:B (3.2) BS05 CA N/A N/A P98158 38771880
    42497 8jxe:B (3.2) BS06 CA N/A N/A P98158 38771880
    42498 8jxe:B (3.2) BS07 CA N/A N/A P98158 38771880
    42499 8jxe:B (3.2) BS08 CA N/A N/A P98158 38771880
    42500 8jxe:B (3.2) BS09 CA N/A N/A P98158 38771880
    42501 8jxe:B (3.2) BS10 CA N/A N/A P98158 38771880
    42502 8jxf:B (3.6) BS02 CA N/A N/A P98158 38771880
    42503 8jxf:B (3.6) BS03 CA N/A N/A P98158 38771880
    42504 8jxf:B (3.6) BS04 CA N/A N/A P98158 38771880
    42505 8jxf:B (3.6) BS05 CA N/A N/A P98158 38771880
    42506 8jxf:B (3.6) BS06 CA N/A N/A P98158 38771880
    42507 8jxf:B (3.6) BS07 CA N/A N/A P98158 38771880
    42508 8jxf:B (3.6) BS08 CA N/A N/A P98158 38771880
    42509 8jxf:B (3.6) BS09 CA N/A N/A P98158 38771880
    42510 8jxf:B (3.6) BS10 CA N/A N/A P98158 38771880
    42511 8jxf:B (3.6) BS11 CA N/A N/A P98158 38771880
    42512 8jxf:B (3.6) BS12 CA N/A N/A P98158 38771880
    42513 8jxf:B (3.6) BS13 CA N/A N/A P98158 38771880
    42514 8jxf:B (3.6) BS14 CA N/A N/A P98158 38771880
    42515 8jxf:B (3.6) BS15 CA N/A N/A P98158 38771880
    42516 8jxf:B (3.6) BS16 CA N/A N/A P98158 38771880
    42517 8jxf:B (3.6) BS17 CA N/A N/A P98158 38771880
    42518 8jxf:B (3.6) BS18 CA N/A N/A P98158 38771880
    42519 8jxf:B (3.6) BS19 CA N/A N/A P98158 38771880
    42520 8jxf:B (3.6) BS20 CA N/A N/A P98158 38771880
    42521 8jxf:B (3.6) BS21 CA N/A N/A P98158 38771880
    42522 8jxg:A (3.2) BS02 CA N/A N/A P98158 38771880
    42523 8jxg:A (3.2) BS03 CA N/A N/A P98158 38771880
    42524 8jxg:A (3.2) BS04 CA N/A N/A P98158 38771880
    42525 8jxg:A (3.2) BS05 CA N/A N/A P98158 38771880
    42526 8jxg:A (3.2) BS06 CA N/A N/A P98158 38771880
    42527 8jxg:A (3.2) BS07 CA N/A N/A P98158 38771880
    42528 8jxg:A (3.2) BS08 CA N/A N/A P98158 38771880
    42529 8jxg:A (3.2) BS09 CA N/A N/A P98158 38771880
    42530 8jxg:A (3.2) BS10 CA N/A N/A P98158 38771880
    42531 8jxg:A (3.2) BS11 CA N/A N/A P98158 38771880
    42532 8jxg:A (3.2) BS12 CA N/A N/A P98158 38771880
    42533 8jxg:A (3.2) BS13 CA N/A N/A P98158 38771880
    42534 8jxg:A (3.2) BS14 CA N/A N/A P98158 38771880
    42535 8jxg:A (3.2) BS15 CA N/A N/A P98158 38771880
    42536 8jxg:A (3.2) BS16 CA N/A N/A P98158 38771880
    42537 8jxg:A (3.2) BS17 CA N/A N/A P98158 38771880
    42538 8jxg:A (3.2) BS18 CA N/A N/A P98158 38771880
    42539 8jxg:A (3.2) BS19 CA N/A N/A P98158 38771880
    42540 8jxg:A (3.2) BS20 CA N/A N/A P98158 38771880
    42541 8jxg:A (3.2) BS21 CA N/A N/A P98158 38771880
    42542 8jxg:A (3.2) BS22 CA N/A N/A P98158 38771880
    42543 8jxh:A (3.5) BS01 CA N/A N/A P98158 38771880
    42544 8jxh:A (3.5) BS02 CA N/A N/A P98158 38771880
    42545 8jxh:A (3.5) BS03 CA N/A N/A P98158 38771880
    42546 8jxh:A (3.5) BS04 CA N/A N/A P98158 38771880
    42547 8jxh:B (3.5) BS03 CA N/A N/A P98158 38771880
    42548 8jxh:B (3.5) BS04 CA N/A N/A P98158 38771880
    42549 8jxh:B (3.5) BS05 CA N/A N/A P98158 38771880
    42550 8jxh:B (3.5) BS06 CA N/A N/A P98158 38771880
    42551 8jxh:B (3.5) BS07 CA N/A N/A P98158 38771880
    42552 8jxh:B (3.5) BS08 CA N/A N/A P98158 38771880
    42553 8jxh:B (3.5) BS09 CA N/A N/A P98158 38771880
    42554 8jxh:B (3.5) BS10 CA N/A N/A P98158 38771880
    42555 8jxh:B (3.5) BS11 CA N/A N/A P98158 38771880
    42556 8jxh:B (3.5) BS12 CA N/A N/A P98158 38771880
    42557 8jxh:B (3.5) BS13 CA N/A N/A P98158 38771880
    42558 8jxh:B (3.5) BS14 CA N/A N/A P98158 38771880
    42559 8jxi:A (3.4) BS03 CA N/A N/A P98158 38771880
    42560 8jxi:A (3.4) BS04 CA N/A N/A P98158 38771880
    42561 8jxi:A (3.4) BS05 CA N/A N/A P98158 38771880
    42562 8jxi:A (3.4) BS06 CA N/A N/A P98158 38771880
    42563 8jxi:A (3.4) BS07 CA N/A N/A P98158 38771880
    42564 8jxi:A (3.4) BS08 CA N/A N/A P98158 38771880
    42565 8jxi:A (3.4) BS09 CA N/A N/A P98158 38771880
    42566 8jxi:A (3.4) BS10 CA N/A N/A P98158 38771880
    42567 8jxi:A (3.4) BS11 CA N/A N/A P98158 38771880
    42568 8jxi:A (3.4) BS12 CA N/A N/A P98158 38771880
    42569 8jxi:A (3.4) BS13 CA N/A N/A P98158 38771880
    42570 8jxi:A (3.4) BS14 CA N/A N/A P98158 38771880
    42571 8jxi:B (3.4) BS01 CA N/A N/A P98158 38771880
    42572 8jxi:B (3.4) BS02 CA N/A N/A P98158 38771880
    42573 8jxi:B (3.4) BS03 CA N/A N/A P98158 38771880
    42574 8jxi:B (3.4) BS04 CA N/A N/A P98158 38771880
    42575 8jxj:A (3.9) BS02 CA N/A N/A P98158 38771880
    42576 8jxj:A (3.9) BS03 CA N/A N/A P98158 38771880
    42577 8jxj:A (3.9) BS04 CA N/A N/A P98158 38771880
    42578 8jxj:A (3.9) BS05 CA N/A N/A P98158 38771880
    42579 8jxj:B (3.9) BS01 CA N/A N/A P98158 38771880
    42580 8jxj:B (3.9) BS02 CA N/A N/A P98158 38771880
    42581 8jxj:B (3.9) BS03 CA N/A N/A P98158 38771880
    42582 8jxj:B (3.9) BS04 CA N/A N/A P98158 38771880
    42583 8k4z:A (1.7) BS02 CA 3.4.24.23 GO:0004222 ... P09237 N/A
    42584 8k4z:A (1.7) BS03 CA 3.4.24.23 GO:0004222 ... P09237 N/A
    42585 8k5m:A () BS02 CA N/A N/A N/A N/A
    42586 8k5v:A (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42587 8k5v:A (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42588 8k5v:A (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42589 8k5v:B (1.7) BS03 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42590 8k5v:B (1.7) BS04 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42591 8k5v:B (1.7) BS05 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42592 8k5w:A (2.0) BS03 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42593 8k5w:A (2.0) BS04 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42594 8k5w:A (2.0) BS05 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42595 8k5w:B (2.0) BS03 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42596 8k5w:B (2.0) BS04 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42597 8k5w:B (2.0) BS05 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42598 8k5x:A (1.9) BS03 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42599 8k5x:A (1.9) BS04 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    42600 8k5x:A (1.9) BS05 CA 3.4.24.35 GO:0004222 ... P14780 37952596
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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