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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42001 8irg:O (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    42002 8irg:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    42003 8irg:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    42004 8irg:o (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    42005 8irh:C (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    42006 8irh:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    42007 8irh:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    42008 8irh:c (2.25) BS17 CA ? GO:0005737 ... D0VWR7 38297122
    42009 8irh:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    42010 8iri:C (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    42011 8iri:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    42012 8iri:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    42013 8iri:c (2.25) BS17 CA ? GO:0005737 ... D0VWR7 38297122
    42014 8iri:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    42015 8itg:A (2.25) BS02 CA ? N/A N/A 37550286
    42016 8ith:A (2.55) BS01 CA ? N/A N/A 37550286
    42017 8iug:C (2.86) BS06 CA ? GO:0005506 ... Q83XC9 37468106
    42018 8iun:C (2.85) BS05 CA ? GO:0005506 ... A7NQE7 37468106
    42019 8iw5:B (1.7) BS01 CA ? N/A Q8C8U0 37874676
    42020 8iwp:A (3.59) BS01 CA 7.2.2.10 GO:0000139 ... P98194 37258749
    42021 8iwr:A (3.52) BS01 CA 7.2.2.10 GO:0000139 ... P98194 37258749
    42022 8iws:A (3.42) BS02 CA 7.2.2.10 GO:0000139 ... P98194 37258749
    42023 8iww:A (3.71) BS01 CA 7.2.2.10 GO:0000139 ... P98194 37258749
    42024 8iyv:A (2.1) BS01 CA N/A N/A P00760 39216203
    42025 8izh:A (2.3) BS01 CA N/A N/A P00760 39216203
    42026 8izi:A (2.1) BS01 CA N/A N/A P00760 39216203
    42027 8izk:A (2.0) BS01 CA N/A N/A P00760 39216203
    42028 8j79:A (1.99) BS05 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 N/A
    42029 8j79:A (1.99) BS06 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 N/A
    42030 8j79:B (1.99) BS05 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 N/A
    42031 8j79:B (1.99) BS06 CA 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 N/A
    42032 8j7f:A (2.6) BS05 CA ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    42033 8j7f:B (2.6) BS02 CA ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    42034 8j7f:C (2.6) BS02 CA ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    42035 8j86:A (3.22) BS03 CA 2.7.7.7 GO:0000166 ... A0A7H0DN44 38735603
    42036 8j8f:A (2.98) BS04 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    42037 8j8f:A (2.98) BS05 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    42038 8j8f:A (2.98) BS06 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    42039 8j8g:A (2.79) BS04 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    42040 8j8g:A (2.79) BS05 CA 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    42041 8j8t:A (1.81) BS01 CA ? GO:0016020 ... Q9UGM3 N/A
    42042 8j8t:A (1.81) BS02 CA ? GO:0016020 ... Q9UGM3 N/A
    42043 8j8t:A (1.81) BS03 CA ? GO:0016020 ... Q9UGM3 N/A
    42044 8j8t:B (1.81) BS01 CA ? GO:0016020 ... Q9UGM3 N/A
    42045 8j8t:B (1.81) BS02 CA ? GO:0016020 ... Q9UGM3 N/A
    42046 8j8t:B (1.81) BS03 CA ? GO:0016020 ... Q9UGM3 N/A
    42047 8ja4:A (2.04) BS01 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42048 8ja4:A (2.04) BS02 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42049 8ja4:A (2.04) BS03 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42050 8ja4:A (2.04) BS04 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42051 8ja4:A (2.04) BS05 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42052 8ja4:A (2.04) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42053 8ja6:A (2.0) BS04 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42054 8ja6:A (2.0) BS05 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42055 8ja6:A (2.0) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42056 8ja6:A (2.0) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42057 8ja6:A (2.0) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42058 8ja6:A (2.0) BS09 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42059 8jaz:A (1.82) BS01 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42060 8jaz:A (1.82) BS02 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42061 8jaz:A (1.82) BS03 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42062 8jaz:A (1.82) BS04 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42063 8jaz:A (1.82) BS05 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42064 8jaz:A (1.82) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42065 8jaz:B (1.82) BS03 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42066 8jaz:B (1.82) BS04 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42067 8jaz:B (1.82) BS05 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42068 8jaz:B (1.82) BS06 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42069 8jaz:B (1.82) BS07 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42070 8jaz:B (1.82) BS08 CA 5.1.3.37 GO:0005509 ... A0A0C4WKK2 38649293
    42071 8jbo:A (2.0) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 37726065
    42072 8jbo:A (2.0) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37726065
    42073 8jbo:B (2.0) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 37726065
    42074 8jbo:B (2.0) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37726065
    42075 8jc7:A (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    42076 8jc7:B (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    42077 8jc7:C (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    42078 8jc7:D (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    42079 8jc7:E (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    42080 8jc7:F (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    42081 8jc7:G (2.06) BS01 CA N/A GO:0005576 ... N/A 37741869
    42082 8jjb:A (2.68) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    42083 8jjb:C (2.68) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    42084 8jjb:D (2.68) BS01 CA ? GO:0000226 ... P02554 38430854
    42085 8jjc:A (2.76) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    42086 8jjc:C (2.76) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    42087 8jjm:A (1.8) BS01 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    42088 8jjm:A (1.8) BS02 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    42089 8jjm:A (1.8) BS03 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    42090 8jjm:B (1.8) BS01 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    42091 8jjm:B (1.8) BS02 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    42092 8jjm:B (1.8) BS03 CA ? GO:0004553 ... A0A0S2UQL4 37290279
    42093 8jmo:A (1.95) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 37979420
    42094 8jmp:A (1.9) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 37979420
    42095 8jnv:B (1.6) BS03 CA 1.1.1.267 N/A Q8IKG4 38647213
    42096 8jnv:B (1.6) BS04 CA 1.1.1.267 N/A Q8IKG4 38647213
    42097 8jnw:B (1.44) BS04 CA 1.1.1.267 N/A Q8IKG4 38647213
    42098 8jnw:B (1.44) BS05 CA 1.1.1.267 N/A Q8IKG4 38647213
    42099 8jp4:A (2.53) BS01 CA ? GO:0016020 ... P49257 38493152
    42100 8jp4:A (2.53) BS02 CA ? GO:0016020 ... P49257 38493152
    42101 8jp4:B (2.53) BS01 CA ? GO:0016020 ... P49257 38493152
    42102 8jp4:B (2.53) BS02 CA ? GO:0016020 ... P49257 38493152
    42103 8jp4:C (2.53) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42104 8jp4:C (2.53) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42105 8jp4:D (2.53) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42106 8jp4:D (2.53) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42107 8jp4:E (2.53) BS01 CA ? GO:0016020 ... P49257 38493152
    42108 8jp4:E (2.53) BS02 CA ? GO:0016020 ... P49257 38493152
    42109 8jp4:F (2.53) BS01 CA ? GO:0016020 ... P49257 38493152
    42110 8jp4:F (2.53) BS02 CA ? GO:0016020 ... P49257 38493152
    42111 8jp4:G (2.53) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42112 8jp4:G (2.53) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42113 8jp4:H (2.53) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42114 8jp4:H (2.53) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42115 8jp5:A (2.59) BS01 CA ? GO:0016020 ... P49257 38493152
    42116 8jp5:A (2.59) BS02 CA ? GO:0016020 ... P49257 38493152
    42117 8jp5:B (2.59) BS01 CA ? GO:0016020 ... P49257 38493152
    42118 8jp5:B (2.59) BS02 CA ? GO:0016020 ... P49257 38493152
    42119 8jp5:C (2.59) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42120 8jp5:C (2.59) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42121 8jp5:D (2.59) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42122 8jp5:D (2.59) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42123 8jp5:E (2.59) BS01 CA ? GO:0016020 ... P49257 38493152
    42124 8jp5:E (2.59) BS02 CA ? GO:0016020 ... P49257 38493152
    42125 8jp5:F (2.59) BS01 CA ? GO:0016020 ... P49257 38493152
    42126 8jp5:F (2.59) BS02 CA ? GO:0016020 ... P49257 38493152
    42127 8jp5:G (2.59) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42128 8jp5:G (2.59) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42129 8jp5:H (2.59) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42130 8jp5:H (2.59) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42131 8jp6:A (3.29) BS01 CA ? GO:0016020 ... P49257 38493152
    42132 8jp6:A (3.29) BS02 CA ? GO:0016020 ... P49257 38493152
    42133 8jp6:B (3.29) BS01 CA ? GO:0016020 ... P49257 38493152
    42134 8jp6:B (3.29) BS02 CA ? GO:0016020 ... P49257 38493152
    42135 8jp6:C (3.29) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42136 8jp6:C (3.29) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42137 8jp6:D (3.29) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42138 8jp6:D (3.29) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42139 8jp6:E (3.29) BS01 CA ? GO:0016020 ... P49257 38493152
    42140 8jp6:E (3.29) BS02 CA ? GO:0016020 ... P49257 38493152
    42141 8jp6:F (3.29) BS01 CA ? GO:0016020 ... P49257 38493152
    42142 8jp6:F (3.29) BS02 CA ? GO:0016020 ... P49257 38493152
    42143 8jp6:G (3.29) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42144 8jp6:G (3.29) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42145 8jp6:H (3.29) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42146 8jp6:H (3.29) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42147 8jp7:A (3.51) BS01 CA ? GO:0016020 ... P49257 38493152
    42148 8jp7:A (3.51) BS02 CA ? GO:0016020 ... P49257 38493152
    42149 8jp7:B (3.51) BS01 CA ? GO:0016020 ... P49257 38493152
    42150 8jp7:B (3.51) BS02 CA ? GO:0016020 ... P49257 38493152
    42151 8jp7:C (3.51) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42152 8jp7:C (3.51) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42153 8jp7:D (3.51) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42154 8jp7:D (3.51) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42155 8jp7:E (3.51) BS01 CA ? GO:0016020 ... P49257 38493152
    42156 8jp7:E (3.51) BS02 CA ? GO:0016020 ... P49257 38493152
    42157 8jp7:F (3.51) BS01 CA ? GO:0016020 ... P49257 38493152
    42158 8jp7:F (3.51) BS02 CA ? GO:0016020 ... P49257 38493152
    42159 8jp7:G (3.51) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42160 8jp7:G (3.51) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42161 8jp7:H (3.51) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42162 8jp7:H (3.51) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42163 8jp8:A (3.39) BS01 CA ? GO:0016020 ... P49257 38493152
    42164 8jp8:A (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    42165 8jp8:B (3.39) BS01 CA ? GO:0016020 ... P49257 38493152
    42166 8jp8:B (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    42167 8jp8:C (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42168 8jp8:C (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42169 8jp8:D (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42170 8jp8:D (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42171 8jp8:E (3.39) BS01 CA ? GO:0016020 ... P49257 38493152
    42172 8jp8:E (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    42173 8jp8:F (3.39) BS01 CA ? GO:0016020 ... P49257 38493152
    42174 8jp8:F (3.39) BS02 CA ? GO:0016020 ... P49257 38493152
    42175 8jp8:G (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42176 8jp8:G (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42177 8jp8:H (3.39) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42178 8jp8:H (3.39) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42179 8jp9:A (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    42180 8jp9:A (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    42181 8jp9:B (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    42182 8jp9:B (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    42183 8jp9:C (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42184 8jp9:C (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42185 8jp9:D (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42186 8jp9:D (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42187 8jp9:E (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    42188 8jp9:E (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    42189 8jp9:F (3.37) BS01 CA ? GO:0016020 ... P49257 38493152
    42190 8jp9:F (3.37) BS02 CA ? GO:0016020 ... P49257 38493152
    42191 8jp9:G (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42192 8jp9:G (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42193 8jp9:H (3.37) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42194 8jp9:H (3.37) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    42195 8jpg:A (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    42196 8jpg:A (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    42197 8jpg:B (6.76) BS01 CA ? GO:0016020 ... P49257 38493152
    42198 8jpg:B (6.76) BS02 CA ? GO:0016020 ... P49257 38493152
    42199 8jpg:C (6.76) BS01 CA ? GO:0005509 ... Q8NI22 38493152
    42200 8jpg:C (6.76) BS02 CA ? GO:0005509 ... Q8NI22 38493152
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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