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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41801 8hhv:A (1.6) BS01 CA N/A N/A N/A 37726269
    41802 8hhv:B (1.6) BS01 CA N/A N/A N/A 37726269
    41803 8hhv:C (1.6) BS01 CA N/A N/A N/A 37726269
    41804 8hhv:D (1.6) BS01 CA N/A N/A N/A 37726269
    41805 8hic:A (1.6) BS02 CA ? GO:0046872 ... Q7V3V9 37380083
    41806 8hic:A (1.6) BS03 CA ? GO:0046872 ... Q7V3V9 37380083
    41807 8hlp:A (3.5) BS01 CA ? GO:0002520 ... Q13936 38555290
    41808 8hma:E (3.4) BS02 CA ? GO:0005216 ... A0A0A0MSA1 38555290
    41809 8hma:E (3.4) BS03 CA ? GO:0005216 ... A0A0A0MSA1 38555290
    41810 8hmb:D (3.3) BS02 CA ? GO:0005216 ... A0A0A0MSA1 38555290
    41811 8hmg:A (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41812 8hmg:A (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41813 8hmg:A (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41814 8hmg:B (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41815 8hmg:B (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41816 8hmg:B (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41817 8hmg:C (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41818 8hmg:C (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41819 8hmg:C (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41820 8hmg:D (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41821 8hmg:D (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41822 8hmg:D (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41823 8hmg:E (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41824 8hmg:E (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41825 8hmg:E (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41826 8hmg:F (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41827 8hmg:F (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41828 8hmg:F (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41829 8hmg:G (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41830 8hmg:G (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41831 8hmg:G (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41832 8hmg:H (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41833 8hmg:H (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41834 8hmg:H (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41835 8hmg:I (2.81) BS01 CA 2.3.2.27 N/A Q9LY87 N/A
    41836 8hmg:I (2.81) BS02 CA 2.3.2.27 N/A Q9LY87 N/A
    41837 8hmg:I (2.81) BS03 CA 2.3.2.27 N/A Q9LY87 N/A
    41838 8hpy:A (5.87) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    41839 8hpy:A (5.87) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    41840 8hpy:A (5.87) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    41841 8hpy:B (5.87) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    41842 8hpy:B (5.87) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    41843 8hpy:B (5.87) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    41844 8hpy:D (5.87) BS01 CA ? GO:0005102 ... O95970 N/A
    41845 8hpy:E (5.87) BS01 CA ? GO:0005102 ... O95970 N/A
    41846 8hq0:A () BS01 CA N/A N/A N/A N/A
    41847 8hq0:A () BS02 CA N/A N/A N/A N/A
    41848 8hq0:A () BS03 CA N/A N/A N/A N/A
    41849 8hq0:B () BS01 CA N/A N/A N/A N/A
    41850 8hq0:B () BS02 CA N/A N/A N/A N/A
    41851 8hq0:B () BS03 CA N/A N/A N/A N/A
    41852 8hq0:C () BS01 CA N/A N/A N/A N/A
    41853 8hq0:C () BS02 CA N/A N/A N/A N/A
    41854 8hq0:C () BS03 CA N/A N/A N/A N/A
    41855 8hq0:D () BS01 CA N/A N/A N/A N/A
    41856 8hq0:E () BS01 CA N/A N/A N/A N/A
    41857 8hq0:F () BS01 CA N/A N/A N/A N/A
    41858 8hq1:A (4.17) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    41859 8hq1:A (4.17) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    41860 8hq1:A (4.17) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    41861 8hq1:B (4.17) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    41862 8hq1:B (4.17) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    41863 8hq1:B (4.17) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    41864 8hq1:C (4.17) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    41865 8hq1:C (4.17) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    41866 8hq1:C (4.17) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    41867 8hq1:D (4.17) BS01 CA ? GO:0005102 ... O95970 N/A
    41868 8hq1:E (4.17) BS01 CA ? GO:0005102 ... O95970 N/A
    41869 8hq1:F (4.17) BS01 CA ? GO:0005102 ... O95970 N/A
    41870 8hq2:A (2.93) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    41871 8hq2:A (2.93) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    41872 8hq2:A (2.93) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    41873 8hq2:B (2.93) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    41874 8hq2:B (2.93) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    41875 8hq2:B (2.93) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    41876 8hq2:D (2.93) BS01 CA ? GO:0005102 ... O95970 N/A
    41877 8hq2:E (2.93) BS01 CA ? GO:0005102 ... O95970 N/A
    41878 8hrf:A (2.5) BS01 CA ? GO:0004553 ... A0A9Q3UC14 N/A
    41879 8hrf:B (2.5) BS01 CA ? GO:0004553 ... A0A9Q3UC14 N/A
    41880 8hrf:B (2.5) BS02 CA ? GO:0004553 ... A0A9Q3UC14 N/A
    41881 8htb:A (1.3) BS02 CA ? GO:0003924 ... Q6GHP9 36854145
    41882 8huh:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    41883 8huh:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    41884 8hy9:A (1.462) BS02 CA 3.2.2.5 N/A E4TDY5 38129386
    41885 8hyi:A (2.85) BS01 CA ? GO:0005509 ... P22223 37531208
    41886 8hyi:A (2.85) BS02 CA ? GO:0005509 ... P22223 37531208
    41887 8hyi:B (2.85) BS01 CA ? GO:0005509 ... P22223 37531208
    41888 8hyi:B (2.85) BS02 CA ? GO:0005509 ... P22223 37531208
    41889 8i0k:B (2.86) BS04 CA 1.2.4.2 GO:0016624 ... Q02218 N/A
    41890 8i3y:A (2.4) BS02 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    41891 8i3y:B (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    41892 8i3y:C (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    41893 8i3y:D (2.4) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    41894 8i40:D (2.79) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 N/A
    41895 8i4d:A (1.06) BS05 CA 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    41896 8i5o:A (2.3) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41897 8i5p:A (2.35) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41898 8i5p:B (2.35) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41899 8i5q:A (2.2) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41900 8i5q:B (2.2) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41901 8i5r:A (1.65) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41902 8i5s:A (1.45) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41903 8i5t:A (1.5) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41904 8i5u:A (1.4) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 37180965
    41905 8i7q:A (2.83) BS02 CA ? GO:0030246 ... P02866 38086668
    41906 8ian:A (2.08) BS01 CA N/A N/A N/A 38647782
    41907 8ian:B (2.08) BS01 CA N/A N/A N/A 38647782
    41908 8ibk:A (1.69) BS04 CA ? GO:0004556 ... A0A2Z5WH92 37049872
    41909 8ibk:A (1.69) BS05 CA ? GO:0004556 ... A0A2Z5WH92 37049872
    41910 8ibl:A (2.6) BS01 CA 3.1.1.74 N/A W0TJ64 N/A
    41911 8ibl:B (2.6) BS01 CA 3.1.1.74 N/A W0TJ64 N/A
    41912 8ibm:A (2.2) BS01 CA 3.1.1.74 N/A W0TJ64 N/A
    41913 8ibm:B (2.2) BS01 CA 3.1.1.74 N/A W0TJ64 N/A
    41914 8ic1:A (1.8) BS09 CA N/A N/A N/A 37726269
    41915 8ic1:B (1.8) BS04 CA N/A N/A N/A 37726269
    41916 8ic1:C (1.8) BS09 CA N/A N/A N/A 37726269
    41917 8ic1:D (1.8) BS04 CA N/A N/A N/A 37726269
    41918 8ids:A (1.5) BS03 CA ? GO:0004556 ... A0A2Z5WH92 37049872
    41919 8ids:A (1.5) BS04 CA ? GO:0004556 ... A0A2Z5WH92 37049872
    41920 8if8:B (3.1) BS01 CA 2.4.2.46 GO:0005886 ... P9WN03 37252995
    41921 8if8:C (3.1) BS01 CA 2.4.2.46 GO:0005886 ... P9WN03 37252995
    41922 8ihn:L (3.37) BS03 CA 3.5.1.98 GO:0000082 ... P32561 37845487
    41923 8ihp:M (3.0) BS01 CA ? N/A P98155 37098345
    41924 8ihp:N (3.0) BS01 CA ? N/A P98155 37098345
    41925 8ihp:O (3.0) BS01 CA ? N/A P98155 37098345
    41926 8iht:L (3.72) BS02 CA 3.5.1.98 GO:0000082 ... P32561 37845487
    41927 8ihw:A (1.7) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    41928 8ihx:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    41929 8ihy:A (1.6) BS02 CA 3.2.1.4 GO:0004553 ... I2FI81 N/A
    41930 8ii2:B (1.798) BS01 CA ? N/A P02766 37311373
    41931 8im8:A (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    41932 8im8:A (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    41933 8im8:B (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    41934 8im8:B (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    41935 8im8:C (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    41936 8im8:C (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    41937 8im8:D (2.7) BS01 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    41938 8im8:D (2.7) BS02 CA 3.2.1.1 GO:0004556 ... P25718 37241718
    41939 8imx:K (2.85) BS03 CA 3.-.-.- GO:0003923 ... Q92643 37684232
    41940 8imy:K (3.22) BS01 CA 3.-.-.- GO:0003923 ... Q92643 37684232
    41941 8ing:A (1.98) BS03 CA 1.11.1.7 GO:0004601 ... A0A452E9Y6 N/A
    41942 8inr:R (2.73) BS02 CA ? GO:0004930 ... P03435
    P33032    		 37524700
    41943 8ioc:R (2.86) BS02 CA ? GO:0002027 ... P03435
    P41968    		 37524700
    41944 8iod:R (2.59) BS02 CA ? GO:0004930 ... P03435
    P33032    		 37524700
    41945 8ir5:C (2.15) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41946 8ir5:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41947 8ir5:c (2.15) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41948 8ir5:c (2.15) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41949 8ir5:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41950 8ir6:C (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41951 8ir6:O (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41952 8ir6:c (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41953 8ir6:c (2.2) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41954 8ir6:o (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41955 8ir7:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41956 8ir7:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41957 8ir7:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41958 8ir7:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41959 8ir7:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41960 8ir8:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41961 8ir8:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41962 8ir8:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41963 8ir8:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41964 8ir8:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41965 8ir9:C (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41966 8ir9:O (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41967 8ir9:c (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41968 8ir9:c (2.2) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41969 8ir9:o (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41970 8ira:C (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41971 8ira:O (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41972 8ira:c (2.2) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41973 8ira:c (2.2) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41974 8ira:o (2.2) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41975 8irb:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41976 8irb:O (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41977 8irb:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41978 8irb:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41979 8irb:o (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41980 8irc:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41981 8irc:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41982 8irc:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41983 8irc:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41984 8irc:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41985 8ird:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41986 8ird:O (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41987 8ird:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41988 8ird:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41989 8ird:o (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41990 8ire:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41991 8ire:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41992 8ire:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41993 8ire:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41994 8ire:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41995 8irf:C (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41996 8irf:O (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    41997 8irf:c (2.25) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41998 8irf:c (2.25) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    41999 8irf:o (2.25) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    42000 8irg:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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