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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41401 8em7:A (2.97) BS39 CA ? GO:0005509 ... A2ARV4 36750096
    41402 8em7:A (2.97) BS40 CA ? GO:0005509 ... A2ARV4 36750096
    41403 8em7:A (2.97) BS41 CA ? GO:0005509 ... A2ARV4 36750096
    41404 8em7:A (2.97) BS42 CA ? GO:0005509 ... A2ARV4 36750096
    41405 8em7:A (2.97) BS43 CA ? GO:0005509 ... A2ARV4 36750096
    41406 8em7:A (2.97) BS44 CA ? GO:0005509 ... A2ARV4 36750096
    41407 8em7:B (2.97) BS01 CA ? GO:0005509 ... A2ARV4 36750096
    41408 8em7:B (2.97) BS02 CA ? GO:0005509 ... A2ARV4 36750096
    41409 8em7:B (2.97) BS03 CA ? GO:0005509 ... A2ARV4 36750096
    41410 8em7:B (2.97) BS04 CA ? GO:0005509 ... A2ARV4 36750096
    41411 8em7:B (2.97) BS05 CA ? GO:0005509 ... A2ARV4 36750096
    41412 8em7:B (2.97) BS06 CA ? GO:0005509 ... A2ARV4 36750096
    41413 8em7:B (2.97) BS07 CA ? GO:0005509 ... A2ARV4 36750096
    41414 8em7:B (2.97) BS08 CA ? GO:0005509 ... A2ARV4 36750096
    41415 8em7:B (2.97) BS09 CA ? GO:0005509 ... A2ARV4 36750096
    41416 8em7:B (2.97) BS10 CA ? GO:0005509 ... A2ARV4 36750096
    41417 8em7:B (2.97) BS11 CA ? GO:0005509 ... A2ARV4 36750096
    41418 8em7:B (2.97) BS12 CA ? GO:0005509 ... A2ARV4 36750096
    41419 8em7:B (2.97) BS13 CA ? GO:0005509 ... A2ARV4 36750096
    41420 8em7:B (2.97) BS14 CA ? GO:0005509 ... A2ARV4 36750096
    41421 8em7:B (2.97) BS15 CA ? GO:0005509 ... A2ARV4 36750096
    41422 8em7:B (2.97) BS16 CA ? GO:0005509 ... A2ARV4 36750096
    41423 8em7:B (2.97) BS17 CA ? GO:0005509 ... A2ARV4 36750096
    41424 8em7:B (2.97) BS18 CA ? GO:0005509 ... A2ARV4 36750096
    41425 8em7:B (2.97) BS19 CA ? GO:0005509 ... A2ARV4 36750096
    41426 8em7:B (2.97) BS20 CA ? GO:0005509 ... A2ARV4 36750096
    41427 8em7:B (2.97) BS21 CA ? GO:0005509 ... A2ARV4 36750096
    41428 8em7:B (2.97) BS22 CA ? GO:0005509 ... A2ARV4 36750096
    41429 8em7:B (2.97) BS23 CA ? GO:0005509 ... A2ARV4 36750096
    41430 8em7:B (2.97) BS24 CA ? GO:0005509 ... A2ARV4 36750096
    41431 8em7:B (2.97) BS25 CA ? GO:0005509 ... A2ARV4 36750096
    41432 8em7:B (2.97) BS26 CA ? GO:0005509 ... A2ARV4 36750096
    41433 8em7:B (2.97) BS27 CA ? GO:0005509 ... A2ARV4 36750096
    41434 8em7:B (2.97) BS28 CA ? GO:0005509 ... A2ARV4 36750096
    41435 8em7:B (2.97) BS29 CA ? GO:0005509 ... A2ARV4 36750096
    41436 8em7:B (2.97) BS30 CA ? GO:0005509 ... A2ARV4 36750096
    41437 8em7:B (2.97) BS31 CA ? GO:0005509 ... A2ARV4 36750096
    41438 8em7:B (2.97) BS32 CA ? GO:0005509 ... A2ARV4 36750096
    41439 8em7:B (2.97) BS33 CA ? GO:0005509 ... A2ARV4 36750096
    41440 8em7:B (2.97) BS34 CA ? GO:0005509 ... A2ARV4 36750096
    41441 8em7:B (2.97) BS35 CA ? GO:0005509 ... A2ARV4 36750096
    41442 8em7:B (2.97) BS36 CA ? GO:0005509 ... A2ARV4 36750096
    41443 8em7:B (2.97) BS37 CA ? GO:0005509 ... A2ARV4 36750096
    41444 8em7:B (2.97) BS38 CA ? GO:0005509 ... A2ARV4 36750096
    41445 8em7:B (2.97) BS39 CA ? GO:0005509 ... A2ARV4 36750096
    41446 8em7:B (2.97) BS40 CA ? GO:0005509 ... A2ARV4 36750096
    41447 8em7:B (2.97) BS41 CA ? GO:0005509 ... A2ARV4 36750096
    41448 8em7:B (2.97) BS42 CA ? GO:0005509 ... A2ARV4 36750096
    41449 8em7:B (2.97) BS43 CA ? GO:0005509 ... A2ARV4 36750096
    41450 8em7:B (2.97) BS44 CA ? GO:0005509 ... A2ARV4 36750096
    41451 8emr:B (2.92) BS01 CA ? GO:0005509 ... P14314 37289586
    41452 8emr:B (2.92) BS02 CA ? GO:0005509 ... P14314 37289586
    41453 8emv:A (3.6) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37172014
    41454 8emw:A (3.5) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37172014
    41455 8emx:A (3.3) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37172014
    41456 8eog:D (3.3) BS01 CA ? GO:0005245 ... P13806 37196677
    41457 8eog:K (3.3) BS04 CA ? GO:0005216 ... Q13936 37196677
    41458 8ep4:A (1.94) BS01 CA ? GO:0004553 ... B5CYA6 N/A
    41459 8ep4:B (1.94) BS01 CA ? GO:0004553 ... B5CYA6 N/A
    41460 8ep4:B (1.94) BS02 CA ? GO:0004553 ... B5CYA6 N/A
    41461 8ep4:C (1.94) BS01 CA ? GO:0004553 ... B5CYA6 N/A
    41462 8epc:B (2.51) BS01 CA N/A N/A P00740 38985762
    41463 8eph:A (1.88) BS02 CA N/A N/A P00740 38985762
    41464 8eph:B (1.88) BS01 CA N/A N/A P00740 38985762
    41465 8eph:C (1.88) BS02 CA N/A N/A P00740 38985762
    41466 8eph:D (1.88) BS01 CA N/A N/A P00740 38985762
    41467 8epk:B (2.65) BS03 CA N/A N/A P00740 38985762
    41468 8epk:D (2.65) BS03 CA N/A N/A P00740 38985762
    41469 8epl:A (3.1) BS01 CA ? GO:0005216 ... Q15878 36446785
    41470 8epl:C (3.1) BS01 CA ? N/A P54289 36446785
    41471 8epm:A (3.1) BS01 CA ? GO:0005216 ... Q15878 36446785
    41472 8epm:C (3.1) BS01 CA ? N/A P54289 36446785
    41473 8epx:D (3.15) BS03 CA ? N/A A0A2N8KYF9 36987874
    41474 8est:E (1.78) BS01 CA 3.4.21.36 GO:0004252 ... P00772 2337582
    41475 8esv:A (3.3) BS01 CA 3.4.24.81 GO:0004222 ... O14672 37516108
    41476 8eve:A (2.35) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    41477 8eve:A (2.35) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    41478 8evf:A (2.87) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    41479 8evf:A (2.87) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    41480 8ew1:A (1.8) BS03 CA ? GO:0004553 ... B5CYA6 N/A
    41481 8ew1:B (1.8) BS03 CA ? GO:0004553 ... B5CYA6 N/A
    41482 8ew1:C (1.8) BS03 CA ? GO:0004553 ... B5CYA6 N/A
    41483 8ezf:B (2.15) BS01 CA 5.1.2.1 GO:0016853 ... F9USS9 37886035
    41484 8ezh:B (1.99) BS02 CA 5.1.2.1 GO:0016853 ... F9USS9 37886035
    41485 8ezi:B (1.99) BS03 CA 5.1.2.1 GO:0016853 ... F9USS9 37886035
    41486 8f05:A (1.8) BS01 CA 3.4.21.64 GO:0004252 ... P06873 36876431
    41487 8f06:A (1.8) BS01 CA 3.4.21.64 GO:0004252 ... P06873 36876431
    41488 8f07:A (1.05) BS01 CA 3.4.21.64 GO:0004252 ... P06873 36876431
    41489 8f5n:A (1.9) BS01 CA ? GO:0046872 ... A0A096ZH83 36809931
    41490 8f70:A (2.29) BS01 CA ? GO:0046872 ... A0A096ZH83 36809931
    41491 8f70:A (2.29) BS02 CA ? GO:0046872 ... A0A096ZH83 36809931
    41492 8f8k:A (2.2) BS02 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... O53507 N/A
    41493 8f8k:A (2.2) BS03 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... O53507 N/A
    41494 8f8l:A (2.2) BS02 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... O53507 N/A
    41495 8f8l:A (2.2) BS03 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... O53507 N/A
    41496 8faj:A (1.75) BS02 CA 3.5.2.6 GO:0008658 ... Q6XEC0 37130087
    41497 8faj:A (1.75) BS03 CA 3.5.2.6 GO:0008658 ... Q6XEC0 37130087
    41498 8faj:B (1.75) BS02 CA 3.5.2.6 GO:0008658 ... Q6XEC0 37130087
    41499 8fbg:A (2.29) BS04 CA 2.1.1.357 GO:0005634 ... O88491 N/A
    41500 8fbg:A (2.29) BS06 CA 2.1.1.357 GO:0005634 ... O88491 N/A
    41501 8fbg:B (2.29) BS06 CA 2.1.1.357 GO:0005634 ... O88491 N/A
    41502 8fd7:D (3.1) BS02 CA ? N/A P13806 36973510
    41503 8fd7:K (3.1) BS05 CA ? GO:0005216 ... Q13936 36973510
    41504 8fg4:A (1.85) BS02 CA 3.6.5.2 GO:0003924 ... P01112 37615343
    41505 8fg8:A (2.35) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37285134
    41506 8fg8:B (2.35) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37285134
    41507 8fha:A (1.49) BS01 CA N/A N/A A0A6N7UZI9 N/A
    41508 8fha:B (1.49) BS01 CA N/A N/A A0A6N7UZI9 N/A
    41509 8fha:C (1.49) BS01 CA N/A N/A A0A6N7UZI9 N/A
    41510 8fha:D (1.49) BS01 CA N/A N/A A0A6N7UZI9 N/A
    41511 8fhs:A (3.3) BS01 CA ? GO:0002520 ... Q13936 37972591
    41512 8fhs:D (3.3) BS01 CA ? N/A P54289 37972591
    41513 8fj8:A (2.17) BS01 CA ? GO:0005509 ... P02638 N/A
    41514 8fj8:A (2.17) BS02 CA ? GO:0005509 ... P02638 N/A
    41515 8fj9:A (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41516 8fj9:B (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41517 8fjc:A (2.5) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41518 8fjc:B (2.5) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41519 8fjd:A (4.46) BS01 CA ? GO:0015996 ... A0A3B6QC98 36731794
    41520 8fjd:B (4.46) BS01 CA ? GO:0015996 ... A0A3B6QC98 36731794
    41521 8fjh:B (1.54) BS03 CA 3.6.5.2 GO:0003924 ... P11233 37269475
    41522 8fji:B (1.48) BS03 CA 3.6.5.2 GO:0003924 ... P11233 37269475
    41523 8fjm:A (1.9) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    41524 8fjm:B (1.9) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    41525 8fjn:A (2.1) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    41526 8fk4:A (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41527 8fk4:B (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41528 8fk4:C (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41529 8fk4:D (3.25) BS02 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41530 8fk4:E (3.25) BS04 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41531 8fk4:F (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41532 8fk4:G (3.25) BS02 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41533 8fk4:H (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    41534 8fmm:A (3.112) BS01 CA ? GO:0002086 ... P63316 N/A
    41535 8fmm:A (3.112) BS02 CA ? GO:0002086 ... P63316 N/A
    41536 8fmm:A (3.112) BS03 CA ? GO:0002086 ... P63316 N/A
    41537 8fmm:D (3.112) BS01 CA ? GO:0002086 ... P63316 N/A
    41538 8fmm:D (3.112) BS02 CA ? GO:0002086 ... P63316 N/A
    41539 8fmm:D (3.112) BS03 CA ? GO:0002086 ... P63316 N/A
    41540 8fmn:A (3.101) BS01 CA ? GO:0002086 ... P63316 N/A
    41541 8fmn:A (3.101) BS02 CA ? GO:0002086 ... P63316 N/A
    41542 8fmn:A (3.101) BS03 CA ? GO:0002086 ... P63316 N/A
    41543 8fmn:D (3.101) BS01 CA ? GO:0002086 ... P63316 N/A
    41544 8fmn:D (3.101) BS02 CA ? GO:0002086 ... P63316 N/A
    41545 8fmn:D (3.101) BS03 CA ? GO:0002086 ... P63316 N/A
    41546 8fmo:A (2.612) BS01 CA ? GO:0002086 ... P63316 N/A
    41547 8fmo:A (2.612) BS02 CA ? GO:0002086 ... P63316 N/A
    41548 8fmo:A (2.612) BS03 CA ? GO:0002086 ... P63316 N/A
    41549 8fmo:D (2.612) BS01 CA ? GO:0002086 ... P63316 N/A
    41550 8fmo:D (2.612) BS02 CA ? GO:0002086 ... P63316 N/A
    41551 8fmo:D (2.612) BS03 CA ? GO:0002086 ... P63316 N/A
    41552 8fmp:A (3.24) BS01 CA ? GO:0002086 ... P63316 N/A
    41553 8fmp:A (3.24) BS02 CA ? GO:0002086 ... P63316 N/A
    41554 8fmp:A (3.24) BS03 CA ? GO:0002086 ... P63316 N/A
    41555 8fmp:D (3.24) BS01 CA ? GO:0002086 ... P63316 N/A
    41556 8fmp:D (3.24) BS02 CA ? GO:0002086 ... P63316 N/A
    41557 8fmp:D (3.24) BS03 CA ? GO:0002086 ... P63316 N/A
    41558 8fmq:A (3.248) BS01 CA ? GO:0002086 ... P63316 N/A
    41559 8fmq:A (3.248) BS02 CA ? GO:0002086 ... P63316 N/A
    41560 8fmq:A (3.248) BS03 CA ? GO:0002086 ... P63316 N/A
    41561 8fmq:D (3.248) BS01 CA ? GO:0002086 ... P63316 N/A
    41562 8fmq:D (3.248) BS02 CA ? GO:0002086 ... P63316 N/A
    41563 8fmq:D (3.248) BS03 CA ? GO:0002086 ... P63316 N/A
    41564 8fmr:A (3.238) BS01 CA ? GO:0002086 ... P63316 N/A
    41565 8fmr:A (3.238) BS02 CA ? GO:0002086 ... P63316 N/A
    41566 8fmr:A (3.238) BS03 CA ? GO:0002086 ... P63316 N/A
    41567 8fmr:D (3.238) BS01 CA ? GO:0002086 ... P63316 N/A
    41568 8fmr:D (3.238) BS02 CA ? GO:0002086 ... P63316 N/A
    41569 8fmr:D (3.238) BS03 CA ? GO:0002086 ... P63316 N/A
    41570 8fms:A (3.435) BS01 CA ? GO:0002086 ... P63316 N/A
    41571 8fms:A (3.435) BS02 CA ? GO:0002086 ... P63316 N/A
    41572 8fms:A (3.435) BS03 CA ? GO:0002086 ... P63316 N/A
    41573 8fms:D (3.435) BS01 CA ? GO:0002086 ... P63316 N/A
    41574 8fms:D (3.435) BS02 CA ? GO:0002086 ... P63316 N/A
    41575 8fms:D (3.435) BS03 CA ? GO:0002086 ... P63316 N/A
    41576 8fmt:A (2.8) BS01 CA ? GO:0002086 ... P63316 N/A
    41577 8fmt:A (2.8) BS02 CA ? GO:0002086 ... P63316 N/A
    41578 8fmt:A (2.8) BS03 CA ? GO:0002086 ... P63316 N/A
    41579 8fmt:D (2.8) BS01 CA ? GO:0002086 ... P63316 N/A
    41580 8fmt:D (2.8) BS02 CA ? GO:0002086 ... P63316 N/A
    41581 8fmt:D (2.8) BS03 CA ? GO:0002086 ... P63316 N/A
    41582 8fn3:A (2.17) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    41583 8fn3:A (2.17) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    41584 8fn8:A (1.89) BS01 CA ? N/A P24821 37356715
    41585 8fn9:A (1.8) BS01 CA ? N/A Q92752 37356715
    41586 8fn9:C (1.8) BS01 CA ? N/A Q92752 37356715
    41587 8fn9:E (1.8) BS01 CA ? N/A Q92752 37356715
    41588 8fn9:G (1.8) BS01 CA ? N/A Q92752 37356715
    41589 8fna:A (1.75) BS01 CA ? N/A Q92752 37356715
    41590 8fnb:A (1.8) BS01 CA ? N/A P24821 37356715
    41591 8fnb:B (1.8) BS01 CA ? N/A P24821 37356715
    41592 8fny:B (2.22) BS02 CA ? GO:0000086 ... P0DP23 37068230
    41593 8fny:B (2.22) BS03 CA ? GO:0000086 ... P0DP23 37068230
    41594 8fny:D (2.22) BS02 CA ? GO:0000086 ... P0DP23 37068230
    41595 8fny:D (2.22) BS03 CA ? GO:0000086 ... P0DP23 37068230
    41596 8fo6:B (2.553) BS01 CA ? GO:0000086 ... P0DP23 37068230
    41597 8fo6:B (2.553) BS02 CA ? GO:0000086 ... P0DP23 37068230
    41598 8fog:A (2.29) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    41599 8frr:A (1.27) BS01 CA ? N/A Q99972 38168102
    41600 8ftp:A (1.37) BS01 CA 3.1.1.1 GO:0016020 ... A0A0H2XJL0 37824340
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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