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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41201 8egx:A (3.688) BS04 CA ? GO:0005509 ... Q96JQ0 36797229
    41202 8egx:A (3.688) BS05 CA ? GO:0005509 ... Q96JQ0 36797229
    41203 8egx:A (3.688) BS06 CA ? GO:0005509 ... Q96JQ0 36797229
    41204 8egx:A (3.688) BS07 CA ? GO:0005509 ... Q96JQ0 36797229
    41205 8egx:A (3.688) BS08 CA ? GO:0005509 ... Q96JQ0 36797229
    41206 8egx:A (3.688) BS09 CA ? GO:0005509 ... Q96JQ0 36797229
    41207 8egx:B (3.688) BS01 CA ? GO:0005509 ... Q6V0I7 36797229
    41208 8egx:B (3.688) BS02 CA ? GO:0005509 ... Q6V0I7 36797229
    41209 8egx:B (3.688) BS03 CA ? GO:0005509 ... Q6V0I7 36797229
    41210 8egx:B (3.688) BS04 CA ? GO:0005509 ... Q6V0I7 36797229
    41211 8egx:B (3.688) BS05 CA ? GO:0005509 ... Q6V0I7 36797229
    41212 8egx:B (3.688) BS06 CA ? GO:0005509 ... Q6V0I7 36797229
    41213 8egx:B (3.688) BS07 CA ? GO:0005509 ... Q6V0I7 36797229
    41214 8egx:B (3.688) BS08 CA ? GO:0005509 ... Q6V0I7 36797229
    41215 8egx:B (3.688) BS09 CA ? GO:0005509 ... Q6V0I7 36797229
    41216 8ehe:A (1.1) BS01 CA ? GO:0004252 ... A0A0A7KVG3 36755705
    41217 8ehe:A (1.1) BS02 CA ? GO:0004252 ... A0A0A7KVG3 36755705
    41218 8ehe:A (1.1) BS03 CA ? GO:0004252 ... A0A0A7KVG3 36755705
    41219 8ehe:A (1.1) BS04 CA ? GO:0004252 ... A0A0A7KVG3 36755705
    41220 8ehe:A (1.1) BS05 CA ? GO:0004252 ... A0A0A7KVG3 36755705
    41221 8ehe:A (1.1) BS06 CA ? GO:0004252 ... A0A0A7KVG3 36755705
    41222 8ekg:A (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    41223 8ekg:B (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    41224 8ekg:C (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    41225 8ekg:D (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    41226 8ekg:E (2.65) BS02 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    41227 8ekg:F (2.65) BS01 CA 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    41228 8ekk:A (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41229 8ekk:A (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41230 8ekk:B (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41231 8ekk:B (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41232 8ekk:C (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41233 8ekk:C (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41234 8ekk:D (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41235 8ekk:D (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41236 8ekk:E (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41237 8ekk:E (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41238 8ekk:F (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41239 8ekk:F (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41240 8ekk:G (3.28) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41241 8ekk:G (3.28) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41242 8ekl:A (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41243 8ekl:A (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41244 8ekl:B (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41245 8ekl:B (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41246 8ekl:C (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41247 8ekl:C (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41248 8ekl:D (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41249 8ekl:D (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41250 8ekl:E (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41251 8ekl:E (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41252 8ekl:F (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41253 8ekl:F (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41254 8ekl:G (3.06) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41255 8ekl:G (3.06) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41256 8ekm:A (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41257 8ekm:A (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41258 8ekm:B (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41259 8ekm:B (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41260 8ekm:C (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41261 8ekm:C (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41262 8ekm:D (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41263 8ekm:D (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41264 8ekm:E (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41265 8ekm:E (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41266 8ekm:F (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41267 8ekm:F (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41268 8ekm:G (3.56) BS01 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41269 8ekm:G (3.56) BS02 CA ? GO:0005576 ... A0A9R0BM17 N/A
    41270 8elk:A (1.8) BS03 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41271 8elk:A (1.8) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41272 8els:A (2.267) BS02 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41273 8elt:A (1.66) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41274 8elu:A (1.93) BS03 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41275 8elv:A (2.153) BS03 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41276 8elv:A (2.153) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41277 8elw:A (1.699) BS01 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41278 8elw:A (1.699) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41279 8elx:A (1.975) BS02 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41280 8ely:A (1.75) BS04 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41281 8elz:A (1.961) BS03 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41282 8em0:A (2.109) BS02 CA 3.6.5.2 GO:0000139 ... P01112 37615343
    41283 8em4:A (2.83) BS01 CA ? GO:0005509 ... A2ARV4 36750096
    41284 8em4:A (2.83) BS02 CA ? GO:0005509 ... A2ARV4 36750096
    41285 8em4:A (2.83) BS03 CA ? GO:0005509 ... A2ARV4 36750096
    41286 8em4:A (2.83) BS04 CA ? GO:0005509 ... A2ARV4 36750096
    41287 8em4:A (2.83) BS05 CA ? GO:0005509 ... A2ARV4 36750096
    41288 8em4:A (2.83) BS06 CA ? GO:0005509 ... A2ARV4 36750096
    41289 8em4:A (2.83) BS07 CA ? GO:0005509 ... A2ARV4 36750096
    41290 8em4:A (2.83) BS08 CA ? GO:0005509 ... A2ARV4 36750096
    41291 8em4:A (2.83) BS09 CA ? GO:0005509 ... A2ARV4 36750096
    41292 8em4:A (2.83) BS10 CA ? GO:0005509 ... A2ARV4 36750096
    41293 8em4:A (2.83) BS11 CA ? GO:0005509 ... A2ARV4 36750096
    41294 8em4:A (2.83) BS12 CA ? GO:0005509 ... A2ARV4 36750096
    41295 8em4:A (2.83) BS13 CA ? GO:0005509 ... A2ARV4 36750096
    41296 8em4:A (2.83) BS14 CA ? GO:0005509 ... A2ARV4 36750096
    41297 8em4:A (2.83) BS15 CA ? GO:0005509 ... A2ARV4 36750096
    41298 8em4:A (2.83) BS16 CA ? GO:0005509 ... A2ARV4 36750096
    41299 8em4:A (2.83) BS17 CA ? GO:0005509 ... A2ARV4 36750096
    41300 8em4:A (2.83) BS18 CA ? GO:0005509 ... A2ARV4 36750096
    41301 8em4:A (2.83) BS19 CA ? GO:0005509 ... A2ARV4 36750096
    41302 8em4:A (2.83) BS20 CA ? GO:0005509 ... A2ARV4 36750096
    41303 8em4:A (2.83) BS21 CA ? GO:0005509 ... A2ARV4 36750096
    41304 8em4:A (2.83) BS22 CA ? GO:0005509 ... A2ARV4 36750096
    41305 8em4:A (2.83) BS23 CA ? GO:0005509 ... A2ARV4 36750096
    41306 8em4:A (2.83) BS24 CA ? GO:0005509 ... A2ARV4 36750096
    41307 8em4:A (2.83) BS25 CA ? GO:0005509 ... A2ARV4 36750096
    41308 8em4:A (2.83) BS26 CA ? GO:0005509 ... A2ARV4 36750096
    41309 8em4:A (2.83) BS27 CA ? GO:0005509 ... A2ARV4 36750096
    41310 8em4:A (2.83) BS28 CA ? GO:0005509 ... A2ARV4 36750096
    41311 8em4:A (2.83) BS29 CA ? GO:0005509 ... A2ARV4 36750096
    41312 8em4:A (2.83) BS30 CA ? GO:0005509 ... A2ARV4 36750096
    41313 8em4:A (2.83) BS31 CA ? GO:0005509 ... A2ARV4 36750096
    41314 8em4:A (2.83) BS32 CA ? GO:0005509 ... A2ARV4 36750096
    41315 8em4:A (2.83) BS33 CA ? GO:0005509 ... A2ARV4 36750096
    41316 8em4:A (2.83) BS34 CA ? GO:0005509 ... A2ARV4 36750096
    41317 8em4:A (2.83) BS35 CA ? GO:0005509 ... A2ARV4 36750096
    41318 8em4:A (2.83) BS36 CA ? GO:0005509 ... A2ARV4 36750096
    41319 8em4:A (2.83) BS37 CA ? GO:0005509 ... A2ARV4 36750096
    41320 8em4:A (2.83) BS38 CA ? GO:0005509 ... A2ARV4 36750096
    41321 8em4:A (2.83) BS39 CA ? GO:0005509 ... A2ARV4 36750096
    41322 8em4:A (2.83) BS40 CA ? GO:0005509 ... A2ARV4 36750096
    41323 8em4:B (2.83) BS01 CA ? GO:0005509 ... A2ARV4 36750096
    41324 8em4:B (2.83) BS02 CA ? GO:0005509 ... A2ARV4 36750096
    41325 8em4:B (2.83) BS03 CA ? GO:0005509 ... A2ARV4 36750096
    41326 8em4:B (2.83) BS04 CA ? GO:0005509 ... A2ARV4 36750096
    41327 8em4:B (2.83) BS05 CA ? GO:0005509 ... A2ARV4 36750096
    41328 8em4:B (2.83) BS06 CA ? GO:0005509 ... A2ARV4 36750096
    41329 8em4:B (2.83) BS07 CA ? GO:0005509 ... A2ARV4 36750096
    41330 8em4:B (2.83) BS08 CA ? GO:0005509 ... A2ARV4 36750096
    41331 8em4:B (2.83) BS09 CA ? GO:0005509 ... A2ARV4 36750096
    41332 8em4:B (2.83) BS10 CA ? GO:0005509 ... A2ARV4 36750096
    41333 8em4:B (2.83) BS11 CA ? GO:0005509 ... A2ARV4 36750096
    41334 8em4:B (2.83) BS12 CA ? GO:0005509 ... A2ARV4 36750096
    41335 8em4:B (2.83) BS13 CA ? GO:0005509 ... A2ARV4 36750096
    41336 8em4:B (2.83) BS14 CA ? GO:0005509 ... A2ARV4 36750096
    41337 8em4:B (2.83) BS15 CA ? GO:0005509 ... A2ARV4 36750096
    41338 8em4:B (2.83) BS16 CA ? GO:0005509 ... A2ARV4 36750096
    41339 8em4:B (2.83) BS17 CA ? GO:0005509 ... A2ARV4 36750096
    41340 8em4:B (2.83) BS18 CA ? GO:0005509 ... A2ARV4 36750096
    41341 8em4:B (2.83) BS19 CA ? GO:0005509 ... A2ARV4 36750096
    41342 8em4:B (2.83) BS20 CA ? GO:0005509 ... A2ARV4 36750096
    41343 8em4:B (2.83) BS21 CA ? GO:0005509 ... A2ARV4 36750096
    41344 8em4:B (2.83) BS22 CA ? GO:0005509 ... A2ARV4 36750096
    41345 8em4:B (2.83) BS23 CA ? GO:0005509 ... A2ARV4 36750096
    41346 8em4:B (2.83) BS24 CA ? GO:0005509 ... A2ARV4 36750096
    41347 8em4:B (2.83) BS25 CA ? GO:0005509 ... A2ARV4 36750096
    41348 8em4:B (2.83) BS26 CA ? GO:0005509 ... A2ARV4 36750096
    41349 8em4:B (2.83) BS27 CA ? GO:0005509 ... A2ARV4 36750096
    41350 8em4:B (2.83) BS28 CA ? GO:0005509 ... A2ARV4 36750096
    41351 8em4:B (2.83) BS29 CA ? GO:0005509 ... A2ARV4 36750096
    41352 8em4:B (2.83) BS30 CA ? GO:0005509 ... A2ARV4 36750096
    41353 8em4:B (2.83) BS31 CA ? GO:0005509 ... A2ARV4 36750096
    41354 8em4:B (2.83) BS32 CA ? GO:0005509 ... A2ARV4 36750096
    41355 8em4:B (2.83) BS33 CA ? GO:0005509 ... A2ARV4 36750096
    41356 8em4:B (2.83) BS34 CA ? GO:0005509 ... A2ARV4 36750096
    41357 8em4:B (2.83) BS35 CA ? GO:0005509 ... A2ARV4 36750096
    41358 8em4:B (2.83) BS36 CA ? GO:0005509 ... A2ARV4 36750096
    41359 8em4:B (2.83) BS37 CA ? GO:0005509 ... A2ARV4 36750096
    41360 8em4:B (2.83) BS38 CA ? GO:0005509 ... A2ARV4 36750096
    41361 8em4:B (2.83) BS39 CA ? GO:0005509 ... A2ARV4 36750096
    41362 8em4:B (2.83) BS40 CA ? GO:0005509 ... A2ARV4 36750096
    41363 8em7:A (2.97) BS01 CA ? GO:0005509 ... A2ARV4 36750096
    41364 8em7:A (2.97) BS02 CA ? GO:0005509 ... A2ARV4 36750096
    41365 8em7:A (2.97) BS03 CA ? GO:0005509 ... A2ARV4 36750096
    41366 8em7:A (2.97) BS04 CA ? GO:0005509 ... A2ARV4 36750096
    41367 8em7:A (2.97) BS05 CA ? GO:0005509 ... A2ARV4 36750096
    41368 8em7:A (2.97) BS06 CA ? GO:0005509 ... A2ARV4 36750096
    41369 8em7:A (2.97) BS07 CA ? GO:0005509 ... A2ARV4 36750096
    41370 8em7:A (2.97) BS08 CA ? GO:0005509 ... A2ARV4 36750096
    41371 8em7:A (2.97) BS09 CA ? GO:0005509 ... A2ARV4 36750096
    41372 8em7:A (2.97) BS10 CA ? GO:0005509 ... A2ARV4 36750096
    41373 8em7:A (2.97) BS11 CA ? GO:0005509 ... A2ARV4 36750096
    41374 8em7:A (2.97) BS12 CA ? GO:0005509 ... A2ARV4 36750096
    41375 8em7:A (2.97) BS13 CA ? GO:0005509 ... A2ARV4 36750096
    41376 8em7:A (2.97) BS14 CA ? GO:0005509 ... A2ARV4 36750096
    41377 8em7:A (2.97) BS15 CA ? GO:0005509 ... A2ARV4 36750096
    41378 8em7:A (2.97) BS16 CA ? GO:0005509 ... A2ARV4 36750096
    41379 8em7:A (2.97) BS17 CA ? GO:0005509 ... A2ARV4 36750096
    41380 8em7:A (2.97) BS18 CA ? GO:0005509 ... A2ARV4 36750096
    41381 8em7:A (2.97) BS19 CA ? GO:0005509 ... A2ARV4 36750096
    41382 8em7:A (2.97) BS20 CA ? GO:0005509 ... A2ARV4 36750096
    41383 8em7:A (2.97) BS21 CA ? GO:0005509 ... A2ARV4 36750096
    41384 8em7:A (2.97) BS22 CA ? GO:0005509 ... A2ARV4 36750096
    41385 8em7:A (2.97) BS23 CA ? GO:0005509 ... A2ARV4 36750096
    41386 8em7:A (2.97) BS24 CA ? GO:0005509 ... A2ARV4 36750096
    41387 8em7:A (2.97) BS25 CA ? GO:0005509 ... A2ARV4 36750096
    41388 8em7:A (2.97) BS26 CA ? GO:0005509 ... A2ARV4 36750096
    41389 8em7:A (2.97) BS27 CA ? GO:0005509 ... A2ARV4 36750096
    41390 8em7:A (2.97) BS28 CA ? GO:0005509 ... A2ARV4 36750096
    41391 8em7:A (2.97) BS29 CA ? GO:0005509 ... A2ARV4 36750096
    41392 8em7:A (2.97) BS30 CA ? GO:0005509 ... A2ARV4 36750096
    41393 8em7:A (2.97) BS31 CA ? GO:0005509 ... A2ARV4 36750096
    41394 8em7:A (2.97) BS32 CA ? GO:0005509 ... A2ARV4 36750096
    41395 8em7:A (2.97) BS33 CA ? GO:0005509 ... A2ARV4 36750096
    41396 8em7:A (2.97) BS34 CA ? GO:0005509 ... A2ARV4 36750096
    41397 8em7:A (2.97) BS35 CA ? GO:0005509 ... A2ARV4 36750096
    41398 8em7:A (2.97) BS36 CA ? GO:0005509 ... A2ARV4 36750096
    41399 8em7:A (2.97) BS37 CA ? GO:0005509 ... A2ARV4 36750096
    41400 8em7:A (2.97) BS38 CA ? GO:0005509 ... A2ARV4 36750096
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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