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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    41001 8db7:D (2.33) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    41002 8db8:A (2.21) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    41003 8db8:B (2.21) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    41004 8db8:C (2.21) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    41005 8db8:D (2.21) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    41006 8db9:A (2.89) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    41007 8db9:B (2.89) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    41008 8db9:C (2.89) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    41009 8db9:D (2.89) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    41010 8dcm:C (2.5) BS01 CA ? GO:0005576 ... A8DS70 36951574
    41011 8dcm:C (2.5) BS02 CA ? GO:0005576 ... A8DS70 36951574
    41012 8dcm:C (2.5) BS03 CA ? GO:0005576 ... A8DS70 36951574
    41013 8de6:A (3.2) BS02 CA ? GO:0005579 ... P02748 36639734
    41014 8de6:C (3.2) BS01 CA ? GO:0005579 ... P02748 36639734
    41015 8de6:G (3.2) BS03 CA ? GO:0005579 ... P02748 36639734
    41016 8deo:A (2.3) BS01 CA ? N/A Q5HKE8 36702253
    41017 8deo:B (2.3) BS01 CA ? N/A Q5HKE8 36702253
    41018 8df2:A (2.35) BS02 CA ? N/A B2UKY7 36049519
    41019 8df2:B (2.35) BS02 CA ? N/A B2UKY7 36049519
    41020 8df2:C (2.35) BS02 CA ? N/A B2UKY7 36049519
    41021 8df2:D (2.35) BS02 CA ? N/A B2UKY7 36049519
    41022 8dfv:A (3.06) BS02 CA 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    41023 8dfv:A (3.06) BS03 CA 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    41024 8dfv:A (3.06) BS04 CA 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    41025 8dfv:A (3.06) BS05 CA 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    41026 8dge:A (1.89) BS01 CA N/A GO:0005975 ... N/A 37500984
    41027 8dge:B (1.89) BS01 CA N/A GO:0005975 ... N/A 37500984
    41028 8dge:C (1.89) BS01 CA N/A GO:0005975 ... N/A 37500984
    41029 8dge:D (1.89) BS01 CA N/A GO:0005975 ... N/A 37500984
    41030 8dh6:a (2.94) BS01 CA 7.1.1.9 GO:0004129 ... P00401 N/A
    41031 8dhl:A (2.3) BS01 CA ? GO:0004553 ... G8UKC1 37146137
    41032 8dhl:B (2.3) BS01 CA ? GO:0004553 ... G8UKC1 37146137
    41033 8dhl:B (2.3) BS02 CA ? GO:0004553 ... G8UKC1 37146137
    41034 8diq:A (2.395) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 36596380
    41035 8diq:C (2.395) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 36596380
    41036 8dj2:A (1.5) BS01 CA N/A N/A N/A N/A
    41037 8dj2:B (1.5) BS01 CA N/A N/A N/A N/A
    41038 8dj2:B (1.5) BS02 CA N/A N/A N/A N/A
    41039 8djf:A (1.55) BS01 CA 3.1.1.17 GO:0004341 ... Q6N3R9 36502920
    41040 8djz:A (1.55) BS01 CA 3.1.1.17 GO:0004341 ... Q6N3R9 36502920
    41041 8dk0:A (1.55) BS01 CA 3.1.1.17 GO:0004341 ... Q6N3R9 36502920
    41042 8dl1:A (2.09) BS12 CA N/A GO:0005975 ... N/A 37500984
    41043 8dl1:B (2.09) BS11 CA N/A GO:0005975 ... N/A 37500984
    41044 8dl1:C (2.09) BS12 CA N/A GO:0005975 ... N/A 37500984
    41045 8dl1:D (2.09) BS11 CA N/A GO:0005975 ... N/A 37500984
    41046 8dl2:A (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    41047 8dl2:B (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    41048 8dl2:C (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    41049 8dl2:D (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    41050 8dl6:A (3.0) BS01 CA ? GO:0002260 ... Q9NP59 36648329
    41051 8dmk:G (3.7) BS01 CA ? N/A P11047 36658135
    41052 8dml:B (2.08) BS02 CA ? N/A Q87GI3 36894018
    41053 8dml:D (2.08) BS02 CA ? N/A Q87GI3 36894018
    41054 8dml:F (2.08) BS02 CA ? N/A Q87GI3 36894018
    41055 8dml:H (2.08) BS02 CA ? N/A Q87GI3 36894018
    41056 8dq6:A (1.56) BS01 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    41057 8dq6:A (1.56) BS02 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    41058 8dq6:B (1.56) BS01 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    41059 8dq6:B (1.56) BS02 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    41060 8dq6:C (1.56) BS01 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    41061 8dqo:A (1.9) BS01 CA ? GO:0009805 ... Q8LF28 36737607
    41062 8dqo:B (1.9) BS01 CA ? GO:0009805 ... Q8LF28 36737607
    41063 8dqp:A (2.48) BS02 CA ? GO:0009805 ... Q8LF28 36737607
    41064 8dqp:B (2.48) BS01 CA ? GO:0009805 ... Q8LF28 36737607
    41065 8dqq:A (2.33) BS02 CA ? GO:0009805 ... Q8LF28 36737607
    41066 8dqq:B (2.33) BS01 CA ? GO:0009805 ... Q8LF28 36737607
    41067 8dqr:A (2.26) BS02 CA ? GO:0009805 ... Q8LF28 36737607
    41068 8dt6:A (2.35) BS01 CA ? GO:0003677 ... A0A077EHW1 N/A
    41069 8dt6:B (2.35) BS01 CA ? GO:0003677 ... A0A077EHW1 N/A
    41070 8dt6:C (2.35) BS01 CA ? GO:0003677 ... A0A077EHW1 N/A
    41071 8dt6:C (2.35) BS02 CA ? GO:0003677 ... A0A077EHW1 N/A
    41072 8dt6:C (2.35) BS03 CA ? GO:0003677 ... A0A077EHW1 N/A
    41073 8dt6:D (2.35) BS01 CA ? GO:0003677 ... A0A077EHW1 N/A
    41074 8dt6:D (2.35) BS02 CA ? GO:0003677 ... A0A077EHW1 N/A
    41075 8duj:A (3.7) BS02 CA ? GO:0003151 ... P11716 37224245
    41076 8duj:D (3.7) BS02 CA ? GO:0003151 ... P11716 37224245
    41077 8duj:G (3.7) BS02 CA ? GO:0003151 ... P11716 37224245
    41078 8duj:J (3.7) BS02 CA ? GO:0003151 ... P11716 37224245
    41079 8dve:A (3.84) BS02 CA ? GO:0003151 ... P11716 37224245
    41080 8dve:D (3.84) BS02 CA ? GO:0003151 ... P11716 37224245
    41081 8dve:G (3.84) BS02 CA ? GO:0003151 ... P11716 37224245
    41082 8dve:J (3.84) BS02 CA ? GO:0003151 ... P11716 37224245
    41083 8dvl:A (2.5) BS02 CA ? N/A O75581 36893429
    41084 8dvm:A (2.0) BS02 CA ? N/A O75581 36893429
    41085 8dvm:A (2.0) BS03 CA ? N/A O75581 36893429
    41086 8dvn:A (2.53) BS01 CA ? N/A O75581 36893429
    41087 8dvn:A (2.53) BS02 CA ? N/A O75581 36893429
    41088 8dvn:A (2.53) BS03 CA ? N/A O75581 36893429
    41089 8dvn:A (2.53) BS04 CA ? N/A O75581 36893429
    41090 8dvp:A (1.54) BS04 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    41091 8dvp:A (1.54) BS05 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    41092 8dvp:A (1.54) BS06 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    41093 8dvv:A (3.68) BS01 CA ? GO:0001666 ... E9Q401 N/A
    41094 8dvv:B (3.68) BS01 CA ? GO:0001666 ... E9Q401 N/A
    41095 8dvv:C (3.68) BS01 CA ? GO:0001666 ... E9Q401 N/A
    41096 8dvv:D (3.68) BS01 CA ? GO:0001666 ... E9Q401 N/A
    41097 8dvy:A (2.36) BS04 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    41098 8dvy:A (2.36) BS05 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    41099 8dvy:A (2.36) BS06 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    41100 8dw7:A (1.96) BS04 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    41101 8dw7:D (1.96) BS04 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    41102 8dwb:AAA (1.602) BS02 CA 3.2.1.18 GO:0004308 ... Q8AZ87 36640354
    41103 8dwd:A (1.68) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41104 8dwd:A (1.68) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41105 8dwe:A (2.2) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41106 8dwe:A (2.2) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41107 8dwe:D (2.2) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41108 8dwe:D (2.2) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41109 8dwf:A (2.6) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41110 8dwf:A (2.6) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41111 8dwf:D (2.6) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41112 8dwf:D (2.6) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    41113 8dzo:B (1.8) BS01 CA 3.6.5.2 GO:0003400 ... Q9NR31 36369712
    41114 8e4l:A (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    41115 8e4l:B (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    41116 8e4l:C (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    41117 8e4l:D (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    41118 8e4m:A (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    41119 8e4m:B (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    41120 8e4m:C (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    41121 8e4m:D (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    41122 8e51:B (2.594) BS01 CA N/A GO:0005509 ... N/A 36911992
    41123 8e51:B (2.594) BS02 CA N/A GO:0005509 ... N/A 36911992
    41124 8e51:B (2.594) BS03 CA N/A GO:0005509 ... N/A 36911992
    41125 8e51:B (2.594) BS04 CA N/A GO:0005509 ... N/A 36911992
    41126 8e51:B (2.594) BS05 CA N/A GO:0005509 ... N/A 36911992
    41127 8e51:B (2.594) BS06 CA N/A GO:0005509 ... N/A 36911992
    41128 8e51:C (2.594) BS01 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    41129 8e51:C (2.594) BS02 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    41130 8e51:C (2.594) BS03 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    41131 8e51:C (2.594) BS04 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    41132 8e51:C (2.594) BS05 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    41133 8e51:C (2.594) BS06 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    41134 8e51:C (2.594) BS07 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    41135 8e52:AAA (2.8) BS01 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    41136 8e52:AAA (2.8) BS02 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    41137 8e52:AAA (2.8) BS03 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    41138 8e52:AAA (2.8) BS04 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    41139 8e53:AAA (1.7) BS01 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    41140 8e53:AAA (1.7) BS02 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    41141 8e56:A (2.8) BS01 CA ? GO:0005216 ... P07293 36417914
    41142 8e56:F (2.8) BS02 CA ? N/A P13806 36417914
    41143 8e57:A (2.8) BS01 CA ? GO:0005216 ... P07293 36417914
    41144 8e57:F (2.8) BS01 CA ? N/A P13806 36417914
    41145 8e58:A (3.0) BS01 CA ? GO:0005216 ... P07293 36417914
    41146 8e58:F (3.0) BS01 CA ? N/A P13806 36417914
    41147 8e59:A (3.1) BS02 CA ? GO:0005216 ... Q01668 36417914
    41148 8e59:D (3.1) BS01 CA ? N/A P54289 36417914
    41149 8e5a:A (3.3) BS01 CA ? GO:0005216 ... Q01668 36417914
    41150 8e5a:D (3.3) BS01 CA ? N/A P54289 36417914
    41151 8e5b:A (3.3) BS03 CA ? GO:0005216 ... Q01668 36417914
    41152 8e5b:D (3.3) BS01 CA ? N/A P54289 36417914
    41153 8e6s:A (4.6) BS04 CA N/A N/A O94759 N/A
    41154 8e6s:B (4.6) BS04 CA N/A N/A O94759 N/A
    41155 8e6s:C (4.6) BS04 CA N/A N/A O94759 N/A
    41156 8e6s:D (4.6) BS04 CA N/A N/A O94759 N/A
    41157 8e7f:A (2.0) BS01 CA 3.4.21.- GO:0004252 ... P09489 36859523
    41158 8e7f:A (2.0) BS02 CA 3.4.21.- GO:0004252 ... P09489 36859523
    41159 8e7f:A (2.0) BS03 CA 3.4.21.- GO:0004252 ... P09489 36859523
    41160 8e8b:A (2.2) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    41161 8eaq:A (3.26) BS02 CA ? GO:0000902 ... P29994 36376291
    41162 8eaq:B (3.26) BS04 CA ? GO:0000902 ... P29994 36376291
    41163 8eaq:C (3.26) BS03 CA ? GO:0000902 ... P29994 36376291
    41164 8eaq:D (3.26) BS05 CA ? GO:0000902 ... P29994 36376291
    41165 8ebs:J (4.0) BS01 CA ? GO:0000278 ... P41208 37076618
    41166 8ebs:J (4.0) BS02 CA ? GO:0000278 ... P41208 37076618
    41167 8ebt:J (3.9) BS01 CA ? GO:0005509 ... P41208 37076618
    41168 8ebt:J (3.9) BS02 CA ? GO:0005509 ... P41208 37076618
    41169 8ebv:J (7.1) BS01 CA ? GO:0000278 ... P41208 37076618
    41170 8ebv:J (7.1) BS02 CA ? GO:0000278 ... P41208 37076618
    41171 8ebw:J (5.6) BS01 CA ? GO:0000278 ... P41208 37076618
    41172 8ebw:J (5.6) BS02 CA ? GO:0000278 ... P41208 37076618
    41173 8ebx:J (3.6) BS01 CA ? GO:0000278 ... P41208 37076618
    41174 8ebx:J (3.6) BS02 CA ? GO:0000278 ... P41208 37076618
    41175 8ecy:C (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    41176 8ecy:E (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    41177 8ecy:G (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    41178 8ecy:K (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    41179 8ecy:N (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    41180 8edk:A (2.5) BS01 CA ? N/A P34710 38363837
    41181 8eg3:A (2.04) BS01 CA 3.1.6.2 N/A P08842 36427797
    41182 8egw:A (2.3) BS01 CA ? GO:0005509 ... Q96JQ0 36797229
    41183 8egw:A (2.3) BS02 CA ? GO:0005509 ... Q96JQ0 36797229
    41184 8egw:A (2.3) BS03 CA ? GO:0005509 ... Q96JQ0 36797229
    41185 8egw:A (2.3) BS04 CA ? GO:0005509 ... Q96JQ0 36797229
    41186 8egw:A (2.3) BS05 CA ? GO:0005509 ... Q96JQ0 36797229
    41187 8egw:A (2.3) BS06 CA ? GO:0005509 ... Q96JQ0 36797229
    41188 8egw:B (2.3) BS01 CA ? GO:0005509 ... Q6V0I7 36797229
    41189 8egw:B (2.3) BS02 CA ? GO:0005509 ... Q6V0I7 36797229
    41190 8egw:B (2.3) BS03 CA ? GO:0005509 ... Q6V0I7 36797229
    41191 8egw:B (2.3) BS04 CA ? GO:0005509 ... Q6V0I7 36797229
    41192 8egw:B (2.3) BS05 CA ? GO:0005509 ... Q6V0I7 36797229
    41193 8egw:B (2.3) BS06 CA ? GO:0005509 ... Q6V0I7 36797229
    41194 8egw:B (2.3) BS07 CA ? GO:0005509 ... Q6V0I7 36797229
    41195 8egw:B (2.3) BS08 CA ? GO:0005509 ... Q6V0I7 36797229
    41196 8egw:B (2.3) BS09 CA ? GO:0005509 ... Q6V0I7 36797229
    41197 8egw:B (2.3) BS10 CA ? GO:0005509 ... Q6V0I7 36797229
    41198 8egx:A (3.688) BS01 CA ? GO:0005509 ... Q96JQ0 36797229
    41199 8egx:A (3.688) BS02 CA ? GO:0005509 ... Q96JQ0 36797229
    41200 8egx:A (3.688) BS03 CA ? GO:0005509 ... Q96JQ0 36797229
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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