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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40801 8coz:A (1.438) BS01 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40802 8coz:A (1.438) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40803 8coz:A (1.438) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40804 8coz:B (1.438) BS01 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40805 8coz:B (1.438) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40806 8coz:B (1.438) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40807 8cp0:A (3.251) BS01 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40808 8cp0:A (3.251) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40809 8cp0:A (3.251) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    40810 8cqf:A (2.05) BS09 CA 3.2.1.1 GO:0003824 ... P29957 37379391
    40811 8cqg:A (1.74) BS01 CA 3.2.1.1 GO:0003824 ... P29957 37379391
    40812 8cqp:C (1.7) BS01 CA N/A GO:0006396 ... N/A 38591647
    40813 8cr3:A (1.12) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    40814 8cr4:A (0.91) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    40815 8cr7:A (1.5) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    40816 8cr7:B (1.5) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    40817 8crl:A (2.6) BS02 CA 6.3.1.20 GO:0005524 ... A0A1D2IX29 37249408
    40818 8ctm:A (1.73) BS01 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    40819 8ctm:B (1.73) BS01 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    40820 8ctm:C (1.73) BS01 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    40821 8ctm:C (1.73) BS02 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    40822 8ctm:D (1.73) BS01 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    40823 8d02:A (1.4) BS01 CA ? GO:0003674 ... Q81TN4 37382447
    40824 8d1d:A (1.42) BS01 CA 3.1.1.101 GO:0005576 ... A0A0K8P6T7 N/A
    40825 8d1d:C (1.42) BS01 CA 3.1.1.101 GO:0005576 ... A0A0K8P6T7 N/A
    40826 8d1e:A (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40827 8d1e:B (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40828 8d1e:C (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40829 8d1e:D (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40830 8d1e:E (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40831 8d1f:A (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40832 8d1f:B (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40833 8d1f:C (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40834 8d1f:D (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40835 8d1f:E (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40836 8d1g:A (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40837 8d1g:B (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40838 8d1g:C (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40839 8d1g:D (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40840 8d1g:E (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    40841 8d1i:A (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    40842 8d1i:B (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    40843 8d1i:C (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    40844 8d1i:D (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    40845 8d1i:E (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    40846 8d1j:A (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    40847 8d1j:B (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    40848 8d1j:C (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    40849 8d1j:D (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    40850 8d1j:E (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    40851 8d1k:A (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    40852 8d1k:B (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    40853 8d1k:C (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    40854 8d1k:D (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    40855 8d1k:E (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    40856 8d1l:A (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    40857 8d1l:B (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    40858 8d1l:C (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    40859 8d1l:D (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    40860 8d1l:E (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    40861 8d1n:A (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    40862 8d1n:B (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    40863 8d1n:C (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    40864 8d1n:D (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    40865 8d1n:E (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    40866 8d1o:A (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    40867 8d1o:B (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    40868 8d1o:C (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    40869 8d1o:D (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    40870 8d1o:E (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    40871 8d33:A (2.46) BS03 CA 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    40872 8d37:A (2.65) BS03 CA 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    40873 8d3c:A (3.1) BS01 CA ? N/A P04275 35776905
    40874 8d3c:A (3.1) BS02 CA ? N/A P04275 35776905
    40875 8d3c:A (3.1) BS03 CA ? N/A P04275 35776905
    40876 8d3c:B (3.1) BS01 CA ? N/A P04275 35776905
    40877 8d3c:B (3.1) BS02 CA ? N/A P04275 35776905
    40878 8d3c:B (3.1) BS03 CA ? N/A P04275 35776905
    40879 8d3c:C (3.1) BS01 CA ? N/A P04275 35776905
    40880 8d3c:C (3.1) BS02 CA ? N/A P04275 35776905
    40881 8d3c:C (3.1) BS03 CA ? N/A P04275 35776905
    40882 8d3c:D (3.1) BS01 CA ? N/A P04275 35776905
    40883 8d3c:D (3.1) BS02 CA ? N/A P04275 35776905
    40884 8d3c:D (3.1) BS03 CA ? N/A P04275 35776905
    40885 8d3c:E (3.1) BS01 CA ? N/A P04275 35776905
    40886 8d3c:E (3.1) BS02 CA ? N/A P04275 35776905
    40887 8d3c:E (3.1) BS03 CA ? N/A P04275 35776905
    40888 8d3c:F (3.1) BS01 CA ? N/A P04275 35776905
    40889 8d3c:F (3.1) BS02 CA ? N/A P04275 35776905
    40890 8d3c:F (3.1) BS03 CA ? N/A P04275 35776905
    40891 8d3c:G (3.1) BS01 CA ? N/A P04275 35776905
    40892 8d3c:G (3.1) BS02 CA ? N/A P04275 35776905
    40893 8d3c:G (3.1) BS03 CA ? N/A P04275 35776905
    40894 8d3c:H (3.1) BS01 CA ? N/A P04275 35776905
    40895 8d3c:H (3.1) BS02 CA ? N/A P04275 35776905
    40896 8d3c:H (3.1) BS03 CA ? N/A P04275 35776905
    40897 8d3c:I (3.1) BS01 CA ? N/A P04275 35776905
    40898 8d3c:I (3.1) BS02 CA ? N/A P04275 35776905
    40899 8d3c:I (3.1) BS03 CA ? N/A P04275 35776905
    40900 8d3c:J (3.1) BS01 CA ? N/A P04275 35776905
    40901 8d3c:J (3.1) BS02 CA ? N/A P04275 35776905
    40902 8d3c:J (3.1) BS03 CA ? N/A P04275 35776905
    40903 8d3c:K (3.1) BS01 CA ? N/A P04275 35776905
    40904 8d3c:K (3.1) BS02 CA ? N/A P04275 35776905
    40905 8d3c:K (3.1) BS03 CA ? N/A P04275 35776905
    40906 8d3c:L (3.1) BS01 CA ? N/A P04275 35776905
    40907 8d3c:L (3.1) BS02 CA ? N/A P04275 35776905
    40908 8d3c:L (3.1) BS03 CA ? N/A P04275 35776905
    40909 8d3c:M (3.1) BS01 CA ? N/A P04275 35776905
    40910 8d3c:M (3.1) BS02 CA ? N/A P04275 35776905
    40911 8d3c:M (3.1) BS03 CA ? N/A P04275 35776905
    40912 8d3c:N (3.1) BS01 CA ? N/A P04275 35776905
    40913 8d3c:N (3.1) BS02 CA ? N/A P04275 35776905
    40914 8d3c:N (3.1) BS03 CA ? N/A P04275 35776905
    40915 8d3c:O (3.1) BS01 CA ? N/A P04275 35776905
    40916 8d3c:O (3.1) BS02 CA ? N/A P04275 35776905
    40917 8d3c:O (3.1) BS03 CA ? N/A P04275 35776905
    40918 8d3c:P (3.1) BS01 CA ? N/A P04275 35776905
    40919 8d3c:P (3.1) BS02 CA ? N/A P04275 35776905
    40920 8d3c:P (3.1) BS03 CA ? N/A P04275 35776905
    40921 8d3d:A (3.2) BS01 CA ? N/A P04275 35776905
    40922 8d3d:A (3.2) BS02 CA ? N/A P04275 35776905
    40923 8d3d:A (3.2) BS03 CA ? N/A P04275 35776905
    40924 8d3d:B (3.2) BS01 CA ? N/A P04275 35776905
    40925 8d3d:B (3.2) BS02 CA ? N/A P04275 35776905
    40926 8d3d:B (3.2) BS03 CA ? N/A P04275 35776905
    40927 8d3d:C (3.2) BS01 CA ? N/A P04275 35776905
    40928 8d3d:C (3.2) BS02 CA ? N/A P04275 35776905
    40929 8d3d:C (3.2) BS03 CA ? N/A P04275 35776905
    40930 8d3d:D (3.2) BS01 CA ? N/A P04275 35776905
    40931 8d3d:D (3.2) BS02 CA ? N/A P04275 35776905
    40932 8d3d:D (3.2) BS03 CA ? N/A P04275 35776905
    40933 8d3d:E (3.2) BS01 CA ? N/A P04275 35776905
    40934 8d3d:E (3.2) BS02 CA ? N/A P04275 35776905
    40935 8d3d:E (3.2) BS03 CA ? N/A P04275 35776905
    40936 8d3d:F (3.2) BS01 CA ? N/A P04275 35776905
    40937 8d3d:F (3.2) BS02 CA ? N/A P04275 35776905
    40938 8d3d:F (3.2) BS03 CA ? N/A P04275 35776905
    40939 8d3d:G (3.2) BS01 CA ? N/A P04275 35776905
    40940 8d3d:G (3.2) BS02 CA ? N/A P04275 35776905
    40941 8d3d:G (3.2) BS03 CA ? N/A P04275 35776905
    40942 8d3d:H (3.2) BS01 CA ? N/A P04275 35776905
    40943 8d3d:H (3.2) BS02 CA ? N/A P04275 35776905
    40944 8d3d:H (3.2) BS03 CA ? N/A P04275 35776905
    40945 8d3d:I (3.2) BS01 CA ? N/A P04275 35776905
    40946 8d3d:I (3.2) BS02 CA ? N/A P04275 35776905
    40947 8d3d:I (3.2) BS03 CA ? N/A P04275 35776905
    40948 8d3d:J (3.2) BS01 CA ? N/A P04275 35776905
    40949 8d3d:J (3.2) BS02 CA ? N/A P04275 35776905
    40950 8d3d:J (3.2) BS03 CA ? N/A P04275 35776905
    40951 8d3d:K (3.2) BS01 CA ? N/A P04275 35776905
    40952 8d3d:K (3.2) BS02 CA ? N/A P04275 35776905
    40953 8d3d:K (3.2) BS03 CA ? N/A P04275 35776905
    40954 8d3d:L (3.2) BS01 CA ? N/A P04275 35776905
    40955 8d3d:L (3.2) BS02 CA ? N/A P04275 35776905
    40956 8d3d:L (3.2) BS03 CA ? N/A P04275 35776905
    40957 8d3d:M (3.2) BS01 CA ? N/A P04275 35776905
    40958 8d3d:M (3.2) BS02 CA ? N/A P04275 35776905
    40959 8d3d:M (3.2) BS03 CA ? N/A P04275 35776905
    40960 8d3d:N (3.2) BS01 CA ? N/A P04275 35776905
    40961 8d3d:N (3.2) BS02 CA ? N/A P04275 35776905
    40962 8d3d:N (3.2) BS03 CA ? N/A P04275 35776905
    40963 8d3d:O (3.2) BS01 CA ? N/A P04275 35776905
    40964 8d3d:O (3.2) BS02 CA ? N/A P04275 35776905
    40965 8d3d:O (3.2) BS03 CA ? N/A P04275 35776905
    40966 8d3d:P (3.2) BS01 CA ? N/A P04275 35776905
    40967 8d3d:P (3.2) BS02 CA ? N/A P04275 35776905
    40968 8d3d:P (3.2) BS03 CA ? N/A P04275 35776905
    40969 8d3r:A (3.04) BS04 CA 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    40970 8d40:A (3.554) BS01 CA ? GO:0005509 ... Q9NYQ6 N/A
    40971 8d40:A (3.554) BS02 CA ? GO:0005509 ... Q9NYQ6 N/A
    40972 8d40:A (3.554) BS03 CA ? GO:0005509 ... Q9NYQ6 N/A
    40973 8d40:A (3.554) BS04 CA ? GO:0005509 ... Q9NYQ6 N/A
    40974 8d40:A (3.554) BS05 CA ? GO:0005509 ... Q9NYQ6 N/A
    40975 8d40:A (3.554) BS06 CA ? GO:0005509 ... Q9NYQ6 N/A
    40976 8d40:A (3.554) BS07 CA ? GO:0005509 ... Q9NYQ6 N/A
    40977 8d40:A (3.554) BS08 CA ? GO:0005509 ... Q9NYQ6 N/A
    40978 8d40:B (3.554) BS01 CA ? GO:0005509 ... Q9NYQ6 N/A
    40979 8d40:B (3.554) BS02 CA ? GO:0005509 ... Q9NYQ6 N/A
    40980 8d40:B (3.554) BS03 CA ? GO:0005509 ... Q9NYQ6 N/A
    40981 8d40:B (3.554) BS04 CA ? GO:0005509 ... Q9NYQ6 N/A
    40982 8d40:B (3.554) BS05 CA ? GO:0005509 ... Q9NYQ6 N/A
    40983 8d40:B (3.554) BS06 CA ? GO:0005509 ... Q9NYQ6 N/A
    40984 8d40:B (3.554) BS07 CA ? GO:0005509 ... Q9NYQ6 N/A
    40985 8d42:A (2.91) BS03 CA 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    40986 8d43:B (2.88) BS01 CA ? GO:0005509 ... P14314 N/A
    40987 8d43:B (2.88) BS02 CA ? GO:0005509 ... P14314 N/A
    40988 8d8m:C (3.1) BS03 CA ? GO:0003677 ... P03856 N/A
    40989 8d94:A (2.44) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    40990 8d94:C (2.44) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    40991 8d9j:B (2.82) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    40992 8d9j:C (2.82) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    40993 8d9j:D (2.82) BS03 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    40994 8db6:A (2.02) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    40995 8db6:B (2.02) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    40996 8db6:C (2.02) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    40997 8db6:D (2.02) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    40998 8db7:A (2.33) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    40999 8db7:B (2.33) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    41000 8db7:C (2.33) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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