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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40201 8a29:D (2.1) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40202 8a29:E (2.1) BS02 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40203 8a29:E (2.1) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40204 8a29:F (2.1) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40205 8a29:F (2.1) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40206 8a45:A (2.0) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40207 8a45:A (2.0) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40208 8a45:D (2.0) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40209 8a45:D (2.0) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40210 8a45:D (2.0) BS05 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40211 8a45:E (2.0) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40212 8a45:F (2.0) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40213 8a45:F (2.0) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40214 8a45:F (2.0) BS05 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40215 8a4d:F (2.2) BS05 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40216 8a5k:B (2.3) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40217 8a5k:C (2.3) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40218 8a5k:D (2.3) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40219 8a5k:F (2.3) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40220 8a5k:F (2.3) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40221 8a76:A (1.5) BS03 CA 3.5.2.6 GO:0016787 ... M4JT39 36450011
    40222 8a76:A (1.5) BS05 CA 3.5.2.6 GO:0016787 ... M4JT39 36450011
    40223 8a76:B (1.5) BS03 CA 3.5.2.6 GO:0016787 ... M4JT39 36450011
    40224 8a76:B (1.5) BS04 CA 3.5.2.6 GO:0016787 ... M4JT39 36450011
    40225 8a7d:C (3.06) BS02 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40226 8a7d:C (3.06) BS03 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40227 8a7d:C (3.06) BS04 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40228 8a7d:C (3.06) BS05 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40229 8a7d:C (3.06) BS06 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40230 8a7d:C (3.06) BS07 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40231 8a7d:C (3.06) BS08 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40232 8a7d:Q (3.06) BS01 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40233 8a7e:C (5.02) BS02 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40234 8a7e:C (5.02) BS03 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40235 8a7e:C (5.02) BS04 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40236 8a7e:C (5.02) BS05 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40237 8a7e:C (5.02) BS06 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40238 8a7e:C (5.02) BS07 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40239 8a7e:C (5.02) BS08 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40240 8a7e:C (5.02) BS09 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40241 8a7e:Q (5.02) BS02 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40242 8a7e:Q (5.02) BS03 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40243 8a7e:Q (5.02) BS04 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40244 8a7e:Q (5.02) BS05 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40245 8a7e:Q (5.02) BS06 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40246 8a7e:Q (5.02) BS07 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40247 8a7e:Q (5.02) BS08 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40248 8a7e:Q (5.02) BS09 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    40249 8a8d:A (2.1) BS02 CA N/A GO:0000103 ... N/A 37277534
    40250 8a8d:B (2.1) BS02 CA N/A GO:0000103 ... N/A 37277534
    40251 8a8o:A (1.45) BS02 CA N/A GO:0016491 ... N/A 37277534
    40252 8a8o:B (1.45) BS02 CA N/A GO:0016491 ... N/A 37277534
    40253 8a9t:A (2.304) BS02 CA 3.6.5.- GO:0000226 ... P81947 36242921
    40254 8a9t:C (2.304) BS02 CA 3.6.5.- GO:0000226 ... P81947 36242921
    40255 8a9t:C (2.304) BS03 CA 3.6.5.- GO:0000226 ... P81947 36242921
    40256 8a9z:A (2.294) BS02 CA 3.6.5.- GO:0000226 ... P81947 36242921
    40257 8a9z:C (2.294) BS02 CA 3.6.5.- GO:0000226 ... P81947 36242921
    40258 8a9z:C (2.294) BS03 CA 3.6.5.- GO:0000226 ... P81947 36242921
    40259 8aas:A (3.2) BS03 CA ? GO:0003676 ... G8ZHS0 37087464
    40260 8acf:H (1.8) BS01 CA N/A N/A N/A N/A
    40261 8aci:H (1.85) BS01 CA N/A N/A N/A N/A
    40262 8ae1:A (3.25) BS01 CA ? N/A Q9RRB6 35943982
    40263 8ae1:A (3.25) BS02 CA ? N/A Q9RRB6 35943982
    40264 8ae1:A (3.25) BS03 CA ? N/A Q9RRB6 35943982
    40265 8ae1:A (3.25) BS04 CA ? N/A Q9RRB6 35943982
    40266 8ae1:A (3.25) BS05 CA ? N/A Q9RRB6 35943982
    40267 8ae1:A (3.25) BS06 CA ? N/A Q9RRB6 35943982
    40268 8ae1:B (3.25) BS01 CA ? N/A Q9RRB6 35943982
    40269 8ae1:B (3.25) BS02 CA ? N/A Q9RRB6 35943982
    40270 8ae1:B (3.25) BS03 CA ? N/A Q9RRB6 35943982
    40271 8ae1:B (3.25) BS04 CA ? N/A Q9RRB6 35943982
    40272 8ae1:B (3.25) BS05 CA ? N/A Q9RRB6 35943982
    40273 8ae1:B (3.25) BS06 CA ? N/A Q9RRB6 35943982
    40274 8ae1:C (3.25) BS01 CA ? N/A Q9RRB6 35943982
    40275 8ae1:C (3.25) BS02 CA ? N/A Q9RRB6 35943982
    40276 8ae1:C (3.25) BS03 CA ? N/A Q9RRB6 35943982
    40277 8ae1:C (3.25) BS04 CA ? N/A Q9RRB6 35943982
    40278 8ae1:C (3.25) BS05 CA ? N/A Q9RRB6 35943982
    40279 8ae1:C (3.25) BS06 CA ? N/A Q9RRB6 35943982
    40280 8aeh:AA1 (3.0) BS01 CA ? GO:0005576 ... O18873 N/A
    40281 8ael:A (2.2) BS02 CA ? GO:0001525 ... P07355
    P57105    		 N/A
    40282 8ael:A (2.2) BS03 CA ? GO:0001525 ... P07355
    P57105    		 N/A
    40283 8ael:A (2.2) BS04 CA ? GO:0001525 ... P07355
    P57105    		 N/A
    40284 8ael:A (2.2) BS05 CA ? GO:0001525 ... P07355
    P57105    		 N/A
    40285 8afj:B (1.6) BS03 CA ? GO:0006400 ... A0A179QS89 N/A
    40286 8afj:B (1.6) BS04 CA ? GO:0006400 ... A0A179QS89 N/A
    40287 8ah3:A (1.4) BS01 CA ? GO:0046872 ... F5IZG2 N/A
    40288 8ah3:A (1.4) BS02 CA ? GO:0046872 ... F5IZG2 N/A
    40289 8ahm:A (2.42) BS02 CA 3.6.5.- GO:0000226 ... P81947 36281761
    40290 8ahm:C (2.42) BS02 CA 3.6.5.- GO:0000226 ... P81947 36281761
    40291 8ahs:A (2.48) BS02 CA ? GO:0000086 ... P0DP23 36906144
    40292 8ahs:A (2.48) BS03 CA ? GO:0000086 ... P0DP23 36906144
    40293 8ahs:A (2.48) BS04 CA ? GO:0000086 ... P0DP23 36906144
    40294 8ahs:A (2.48) BS05 CA ? GO:0000086 ... P0DP23 36906144
    40295 8aht:A (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    40296 8aht:A (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    40297 8aht:A (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    40298 8aht:A (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    40299 8aht:B (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    40300 8aht:B (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    40301 8aht:B (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    40302 8aht:B (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    40303 8aht:C (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    40304 8aht:C (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    40305 8aht:C (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    40306 8aht:C (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    40307 8aht:D (2.2) BS02 CA ? GO:0005509 ... P62203 36906144
    40308 8aht:D (2.2) BS03 CA ? GO:0005509 ... P62203 36906144
    40309 8aht:D (2.2) BS04 CA ? GO:0005509 ... P62203 36906144
    40310 8aht:D (2.2) BS05 CA ? GO:0005509 ... P62203 36906144
    40311 8ahy:B (1.7) BS02 CA ? GO:0005245 ... P62166 38018500
    40312 8ahy:B (1.7) BS03 CA ? GO:0005245 ... P62166 38018500
    40313 8aij:AAA (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    40314 8aij:AAA (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    40315 8aij:BBB (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    40316 8aij:BBB (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    40317 8aij:CCC (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    40318 8aij:CCC (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    40319 8aij:DDD (1.5) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    40320 8aij:DDD (1.5) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    40321 8aiy:AAA (1.55) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    40322 8aiy:AAA (1.55) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    40323 8aiy:BBB (1.55) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    40324 8aiy:BBB (1.55) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    40325 8aiy:CCC (1.55) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    40326 8aiy:CCC (1.55) BS03 CA ? GO:0030246 ... Q9HYN5 36256875
    40327 8aiy:DDD (1.55) BS01 CA ? GO:0030246 ... Q9HYN5 36256875
    40328 8aiy:DDD (1.55) BS02 CA ? GO:0030246 ... Q9HYN5 36256875
    40329 8ajy:A (1.71) BS01 CA ? GO:0030246 ... A0AEF6 36252630
    40330 8ajy:B (1.71) BS01 CA N/A GO:0000272 ... N/A 36252630
    40331 8ajy:B (1.71) BS02 CA N/A GO:0000272 ... N/A 36252630
    40332 8ajy:C (1.71) BS01 CA ? GO:0030246 ... A0AEF6 36252630
    40333 8ajy:D (1.71) BS01 CA N/A GO:0000272 ... N/A 36252630
    40334 8ajy:D (1.71) BS02 CA N/A GO:0000272 ... N/A 36252630
    40335 8alh:B (1.86) BS02 CA ? GO:0005245 ... P62166 38018500
    40336 8alh:B (1.86) BS03 CA ? GO:0005245 ... P62166 38018500
    40337 8alk:A (2.15) BS01 CA 3.1.3.- N/A Q5ZXN5 37076474
    40338 8alk:A (2.15) BS02 CA 3.1.3.- N/A Q5ZXN5 37076474
    40339 8alk:A (2.15) BS03 CA 3.1.3.- N/A Q5ZXN5 37076474
    40340 8alk:B (2.15) BS02 CA 3.6.5.2 GO:0003924 ... Q9H0U4 37076474
    40341 8alm:B (1.85402) BS02 CA ? GO:0005245 ... P62166 38018500
    40342 8alm:B (1.85402) BS03 CA ? GO:0005245 ... P62166 38018500
    40343 8an9:A (1.273) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40344 8an9:A (1.273) BS03 CA ? GO:0030246 ... Q9HYN5 37227046
    40345 8an9:B (1.273) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40346 8an9:B (1.273) BS03 CA ? GO:0030246 ... Q9HYN5 37227046
    40347 8an9:C (1.273) BS01 CA ? GO:0030246 ... Q9HYN5 37227046
    40348 8an9:C (1.273) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40349 8an9:D (1.273) BS01 CA ? GO:0030246 ... Q9HYN5 37227046
    40350 8an9:D (1.273) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40351 8anc:A (1.11) BS03 CA ? GO:0000122 ... P31947 N/A
    40352 8ano:A (1.29) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40353 8ano:A (1.29) BS03 CA ? GO:0030246 ... Q9HYN5 37227046
    40354 8ano:B (1.29) BS01 CA ? GO:0030246 ... Q9HYN5 37227046
    40355 8ano:B (1.29) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40356 8ano:C (1.29) BS01 CA ? GO:0030246 ... Q9HYN5 37227046
    40357 8ano:C (1.29) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40358 8ano:D (1.29) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40359 8ano:D (1.29) BS03 CA ? GO:0030246 ... Q9HYN5 37227046
    40360 8anr:A (1.62) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40361 8anr:A (1.62) BS03 CA ? GO:0030246 ... Q9HYN5 37227046
    40362 8anr:B (1.62) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40363 8anr:B (1.62) BS03 CA ? GO:0030246 ... Q9HYN5 37227046
    40364 8anv:A (2.2) BS03 CA ? GO:0046872 ... A0A1P8CWW1 38177302
    40365 8aoo:A (1.18) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40366 8aoo:A (1.18) BS03 CA ? GO:0030246 ... Q9HYN5 37227046
    40367 8aoo:B (1.18) BS01 CA ? GO:0030246 ... Q9HYN5 37227046
    40368 8aoo:B (1.18) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40369 8aoo:C (1.18) BS01 CA ? GO:0030246 ... Q9HYN5 37227046
    40370 8aoo:C (1.18) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40371 8aoo:D (1.18) BS01 CA ? GO:0030246 ... Q9HYN5 37227046
    40372 8aoo:D (1.18) BS02 CA ? GO:0030246 ... Q9HYN5 37227046
    40373 8aru:A (1.08) BS01 CA 1.8.3.7 N/A Q8NBK3 N/A
    40374 8aru:A (1.08) BS02 CA 1.8.3.7 N/A Q8NBK3 N/A
    40375 8asa:A (2.2) BS05 CA ? GO:0046872 ... Q89410 N/A
    40376 8asa:B (2.2) BS02 CA ? GO:0046872 ... Q89410 N/A
    40377 8asa:C (2.2) BS01 CA ? GO:0046872 ... Q89410 N/A
    40378 8asa:D (2.2) BS03 CA ? GO:0046872 ... Q89410 N/A
    40379 8asa:D (2.2) BS04 CA ? GO:0046872 ... Q89410 N/A
    40380 8asa:E (2.2) BS01 CA ? GO:0046872 ... Q89410 N/A
    40381 8asa:E (2.2) BS02 CA ? GO:0046872 ... Q89410 N/A
    40382 8asa:F (2.2) BS02 CA ? GO:0046872 ... Q89410 N/A
    40383 8asa:F (2.2) BS03 CA ? GO:0046872 ... Q89410 N/A
    40384 8asa:G (2.2) BS02 CA ? GO:0046872 ... Q89410 N/A
    40385 8asa:H (2.2) BS01 CA ? GO:0046872 ... Q89410 N/A
    40386 8asa:H (2.2) BS02 CA ? GO:0046872 ... Q89410 N/A
    40387 8asz:A (1.28) BS02 CA ? GO:0015846 ... P31133 N/A
    40388 8au6:A (2.0) BS01 CA ? GO:0016020 ... Q8NQL8 36469781
    40389 8avq:A (2.0) BS02 CA ? GO:0046872 ... Q89410 N/A
    40390 8avq:B (2.0) BS02 CA ? GO:0046872 ... Q89410 N/A
    40391 8avq:B (2.0) BS03 CA ? GO:0046872 ... Q89410 N/A
    40392 8avq:C (2.0) BS02 CA ? GO:0046872 ... Q89410 N/A
    40393 8avq:D (2.0) BS02 CA ? GO:0046872 ... Q89410 N/A
    40394 8axi:A (1.25) BS04 CA ? GO:0046872 ... B2ULI1 37005422
    40395 8axi:B (1.25) BS04 CA ? GO:0046872 ... B2ULI1 37005422
    40396 8axs:A (1.3) BS03 CA N/A N/A N/A 37005422
    40397 8axs:B (1.3) BS03 CA N/A N/A N/A 37005422
    40398 8axt:A (1.59) BS01 CA ? GO:0046872 ... B2ULI1 37005422
    40399 8axt:B (1.59) BS01 CA ? GO:0046872 ... B2ULI1 37005422
    40400 8ayr:A (2.7) BS01 CA ? GO:0004560 ... B2UQE4 37005422
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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