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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40001 7yvq:G (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    40002 7yvq:G (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40003 7yvs:A (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    40004 7yvs:A (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    40005 7yvs:A (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40006 7yvs:B (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    40007 7yvs:B (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    40008 7yvs:B (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40009 7yvs:C (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    40010 7yvs:C (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    40011 7yvs:C (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40012 7yvs:D (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    40013 7yvs:D (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    40014 7yvs:D (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40015 7yvs:E (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    40016 7yvs:E (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    40017 7yvs:E (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40018 7yvs:F (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    40019 7yvs:F (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    40020 7yvs:F (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40021 7yvs:G (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    40022 7yvs:G (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    40023 7yvs:G (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40024 7ywv:B (2.4) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 36418310
    40025 7yyq:A (1.7) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40026 7yyv:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40027 7yyw:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40028 7yyx:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40029 7yyy:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40030 7yyz:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40031 7yz0:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40032 7yz1:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40033 7yz3:A (1.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40034 7yz5:A (2.11) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40035 7yz6:A (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    40036 7yzx:A (1.9) BS02 CA 3.4.21.110 GO:0004252 ... P15926 36478677
    40037 7z01:A (1.82) BS02 CA 3.6.5.- GO:0000226 ... P81947 35290733
    40038 7z0n:AAA (2.4) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 35440138
    40039 7z1i:A (3.09) BS01 CA 3.2.1.147
    3.2.1.21    		 GO:0004553 ... P37702 N/A
    40040 7z1i:B (3.09) BS01 CA 3.2.1.147
    3.2.1.21    		 GO:0004553 ... P37702 N/A
    40041 7z1i:D (3.09) BS01 CA 3.2.1.147
    3.2.1.21    		 GO:0004553 ... P37702 N/A
    40042 7z25:A (1.35) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35475323
    40043 7z2i:A (1.09) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35475323
    40044 7z2n:A (2.17) BS02 CA 3.6.5.- GO:0000226 ... P81947 35939994
    40045 7z2n:C (2.17) BS02 CA 3.6.5.- GO:0000226 ... P81947 35939994
    40046 7z2u:B (1.9) BS03 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    40047 7z2v:A (1.45) BS01 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    40048 7z2v:A (1.45) BS02 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    40049 7z2v:B (1.45) BS01 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    40050 7z2v:B (1.45) BS02 CA 3.1.1.73 GO:0016787 ... D7RU28 36569051
    40051 7z3j:A (2.0) BS01 CA 3.1.4.11 GO:0004435 ... P10686 35749497
    40052 7z3j:A (2.0) BS02 CA 3.1.4.11 GO:0004435 ... P10686 35749497
    40053 7z3k:AAA (2.0) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 36640760
    40054 7z3l:AAA (2.4) BS06 CA 3.1.4.39 GO:0001953 ... Q64610 36640760
    40055 7z53:B (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36150500
    40056 7z53:D (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36150500
    40057 7z53:H (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36150500
    40058 7z53:J (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36150500
    40059 7z53:N (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36150500
    40060 7z53:P (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36150500
    40061 7z53:T (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36150500
    40062 7z53:V (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36150500
    40063 7z5u:A (1.8) BS03 CA 3.4.24.3 GO:0004222 ... Q9X721 36154055
    40064 7z62:AAA (1.53) BS01 CA ? GO:0005737 ... Q05097 36549118
    40065 7z62:BBB (1.53) BS02 CA ? GO:0005737 ... Q05097 36549118
    40066 7z63:AAA (1.75) BS01 CA ? GO:0005737 ... Q05097 36549118
    40067 7z63:BBB (1.75) BS01 CA ? GO:0005737 ... Q05097 36549118
    40068 7z63:CCC (1.75) BS01 CA ? GO:0005737 ... Q05097 36549118
    40069 7z63:DDD (1.75) BS01 CA ? GO:0005737 ... Q05097 36549118
    40070 7z68:A (1.5) BS01 CA 3.4.24.26 GO:0004222 ... P14756 N/A
    40071 7z6q:A (2.5) BS18 CA ? GO:0009579 ... Q8KAY0 36693097
    40072 7z6q:a (2.5) BS21 CA ? GO:0009579 ... Q8KAY0 36693097
    40073 7z6t:AAA (1.51) BS02 CA 3.4.24.- GO:0004222 ... A1C4M2 N/A
    40074 7z6z:A (1.75) BS03 CA 3.4.15.1 GO:0006508 ... P12821 35653492
    40075 7z6z:B (1.75) BS04 CA 3.4.15.1 GO:0006508 ... P12821 35653492
    40076 7z7d:A (2.0) BS02 CA 3.6.5.- GO:0000226 ... P81947 35404502
    40077 7z7d:C (2.0) BS03 CA 3.6.5.- GO:0000226 ... P81947 35404502
    40078 7z7r:G (3.36) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40079 7z7s:G (2.4) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40080 7z7t:G (3.1) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40081 7z7v:G (2.29) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40082 7z80:G (2.93) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40083 7z83:G (2.88) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40084 7z84:G (2.87) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40085 7z8n:A (2.64) BS01 CA 2.7.13.3 GO:0000155 ... G3XD98 35767996
    40086 7z8n:B (2.64) BS01 CA 2.7.13.3 GO:0000155 ... G3XD98 35767996
    40087 7z9f:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P07478 35775010
    40088 7z9f:X (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P07478 35775010
    40089 7zbv:A (1.95) BS03 CA 3.4.24.3 GO:0004222 ... Q9X721 36154055
    40090 7zc0:AAA (2.25) BS01 CA N/A GO:0005975 ... N/A 36442227
    40091 7zc5:G (3.0) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40092 7zci:G (2.69) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    40093 7zgm:A (1.43) BS01 CA ? GO:0000224 ... U6RD63 36122227
    40094 7zgv:A (1.48) BS02 CA ? N/A A0A2I5TBB8 36395770
    40095 7zgv:A (1.48) BS03 CA ? N/A A0A2I5TBB8 36395770
    40096 7zhb:A (1.89) BS02 CA ? GO:0003980 ... G0SB58 N/A
    40097 7ziy:B (1.7) BS02 CA 3.8.1.5 GO:0003824 ... P0A3G3 36716211
    40098 7zk3:A (2.85) BS01 CA ? GO:0005229 ... Q8BHY3 35589730
    40099 7zk3:A (2.85) BS02 CA ? GO:0005229 ... Q8BHY3 35589730
    40100 7zk3:A (2.85) BS04 CA ? GO:0005229 ... Q8BHY3 35589730
    40101 7zk3:B (2.85) BS01 CA ? GO:0005229 ... Q8BHY3 35589730
    40102 7zk3:B (2.85) BS02 CA ? GO:0005229 ... Q8BHY3 35589730
    40103 7zk3:B (2.85) BS04 CA ? GO:0005229 ... Q8BHY3 35589730
    40104 7zkc:A (1.769) BS01 CA ? GO:0003980 ... G0SB58 37822503
    40105 7zle:A (1.823) BS02 CA ? GO:0003980 ... G0SB58 N/A
    40106 7zlu:A (2.049) BS02 CA ? GO:0003980 ... G0SB58 37822503
    40107 7zlu:B (2.049) BS02 CA ? GO:0003980 ... G0SB58 37822503
    40108 7zlu:C (2.049) BS02 CA ? GO:0003980 ... G0SB58 37822503
    40109 7zmk:A (3.4) BS01 CA ? N/A P55083 N/A
    40110 7zmk:D (3.4) BS01 CA ? N/A P55083 N/A
    40111 7zmk:I (3.4) BS01 CA ? N/A P55083 N/A
    40112 7zmk:L (3.4) BS01 CA ? N/A P55083 N/A
    40113 7zmk:O (3.4) BS01 CA ? N/A P55083 N/A
    40114 7zmk:R (3.4) BS01 CA ? N/A P55083 N/A
    40115 7zmk:U (3.4) BS01 CA ? N/A P55083 N/A
    40116 7zmk:X (3.4) BS01 CA ? N/A P55083 N/A
    40117 7zoc:A (1.91) BS02 CA 3.4.24.3 GO:0004222 ... Q46085 N/A
    40118 7zrp:A (2.65) BS02 CA ? GO:0000086 ... P0DP23 36496072
    40119 7zrp:A (2.65) BS03 CA ? GO:0000086 ... P0DP23 36496072
    40120 7zrp:A (2.65) BS04 CA ? GO:0000086 ... P0DP23 36496072
    40121 7zrp:A (2.65) BS05 CA ? GO:0000086 ... P0DP23 36496072
    40122 7zrp:C (2.65) BS02 CA ? GO:0000086 ... P0DP23 36496072
    40123 7zrp:C (2.65) BS03 CA ? GO:0000086 ... P0DP23 36496072
    40124 7zrp:C (2.65) BS04 CA ? GO:0000086 ... P0DP23 36496072
    40125 7zrp:C (2.65) BS05 CA ? GO:0000086 ... P0DP23 36496072
    40126 7zrq:A (1.68) BS02 CA ? GO:0000086 ... P0DP23 36496072
    40127 7zrq:A (1.68) BS03 CA ? GO:0000086 ... P0DP23 36496072
    40128 7zrq:A (1.68) BS04 CA ? GO:0000086 ... P0DP23 36496072
    40129 7zrq:A (1.68) BS05 CA ? GO:0000086 ... P0DP23 36496072
    40130 7zs0:A (1.75) BS01 CA ? GO:0009055 ... Q1PZE6 N/A
    40131 7zs0:A (1.75) BS02 CA ? GO:0009055 ... Q1PZE6 N/A
    40132 7zs1:A (1.7) BS01 CA ? GO:0009055 ... Q1PZE6 N/A
    40133 7zs1:A (1.7) BS02 CA ? GO:0009055 ... Q1PZE6 N/A
    40134 7zs2:A (1.12) BS01 CA ? GO:0009055 ... Q1PZE6 N/A
    40135 7zs2:A (1.12) BS02 CA ? GO:0009055 ... Q1PZE6 N/A
    40136 7zs8:A (1.4) BS03 CA 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    40137 7zs8:B (1.4) BS03 CA 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    40138 7zvn:A (1.87) BS03 CA ? GO:0001525 ... P07355 36124719
    40139 7zvn:A (1.87) BS04 CA ? GO:0001525 ... P07355 36124719
    40140 7zvn:A (1.87) BS05 CA ? GO:0001525 ... P07355 36124719
    40141 7zvn:A (1.87) BS06 CA ? GO:0001525 ... P07355 36124719
    40142 7zvn:A (1.87) BS07 CA ? GO:0001525 ... P07355 36124719
    40143 7zvn:A (1.87) BS08 CA ? GO:0001525 ... P07355 36124719
    40144 7zvn:A (1.87) BS09 CA ? GO:0001525 ... P07355 36124719
    40145 7zvo:A (1.65) BS03 CA ? N/A Q8A921 36660365
    40146 7zvx:A (2.4) BS02 CA ? GO:0001525 ... P07355 36124719
    40147 7zvx:A (2.4) BS03 CA ? GO:0001525 ... P07355 36124719
    40148 7zvx:A (2.4) BS04 CA ? GO:0001525 ... P07355 36124719
    40149 7zvx:A (2.4) BS05 CA ? GO:0001525 ... P07355 36124719
    40150 7zvx:B (2.4) BS02 CA ? GO:0001525 ... P07355 36124719
    40151 7zvx:B (2.4) BS03 CA ? GO:0001525 ... P07355 36124719
    40152 7zvx:B (2.4) BS04 CA ? GO:0001525 ... P07355 36124719
    40153 7zvx:B (2.4) BS05 CA ? GO:0001525 ... P07355 36124719
    40154 7zvx:B (2.4) BS06 CA ? GO:0001525 ... P07355 36124719
    40155 7zvx:B (2.4) BS07 CA ? GO:0001525 ... P07355 36124719
    40156 7zwh:D (3.2) BS01 CA ? N/A P04275 36179246
    40157 7zwh:D (3.2) BS02 CA ? N/A P04275 36179246
    40158 7zwh:D (3.2) BS03 CA ? N/A P04275 36179246
    40159 7zwh:E (3.2) BS01 CA ? N/A P04275 36179246
    40160 7zwh:E (3.2) BS02 CA ? N/A P04275 36179246
    40161 7zwh:E (3.2) BS03 CA ? N/A P04275 36179246
    40162 7zx2:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 36462501
    40163 7zx2:C (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 36462501
    40164 7zxw:A (2.246) BS01 CA ? GO:0003980 ... G0SB58 36589243
    40165 7zy3:A (1.8) BS02 CA ? GO:0005216 ... P96787 37791355
    40166 7zyb:A (1.5) BS01 CA ? GO:0046872 ... A0A380Z821 N/A
    40167 7zyw:A (2.45) BS02 CA 3.6.5.- GO:0000226 ... P81947 38294341
    40168 7zyw:C (2.45) BS02 CA 3.6.5.- GO:0000226 ... P81947 38294341
    40169 7zzn:A (2.01) BS01 CA 2.5.1.18 GO:0004364 ... D2X9R3 36032685
    40170 7zzo:A (2.0) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40171 7zzo:B (2.0) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40172 7zzo:C (2.0) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40173 7zzp:A (1.52) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40174 7zzp:B (1.52) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40175 7zzp:C (1.52) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40176 7zzr:A (2.168) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40177 7zzr:B (2.168) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40178 7zzr:C (2.168) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40179 7zzs:A (1.88) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40180 7zzs:B (1.88) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40181 7zzs:C (1.88) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40182 7zzt:A (1.56) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40183 7zzt:B (1.56) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40184 7zzt:C (1.56) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40185 7zzu:A (1.85) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40186 7zzu:B (1.85) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40187 7zzu:C (1.85) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40188 7zzw:A (1.73) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40189 7zzw:B (1.73) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40190 7zzw:C (1.73) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40191 830c:A (1.6) BS03 CA 3.4.24.- GO:0004222 ... P45452 10074939
    40192 830c:B (1.6) BS03 CA 3.4.24.- GO:0004222 ... P45452 10074939
    40193 8a0b:A (1.746) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40194 8a0b:B (1.746) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40195 8a0b:C (1.746) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q92769 36262388
    40196 8a0l:A (1.9981) BS02 CA 3.6.5.- GO:0000226 ... P81947 36462501
    40197 8a0l:C (1.9981) BS02 CA 3.6.5.- GO:0000226 ... P81947 36462501
    40198 8a29:A (2.1) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40199 8a29:D (2.1) BS02 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    40200 8a29:D (2.1) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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