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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39801 7xli:B (1.7) BS01 CA N/A N/A N/A 37330175
    39802 7xlp:A (2.1) BS02 CA 2.7.12.2 GO:0004672 ... Q02750 36622773
    39803 7xlq:A (3.1) BS06 CA ? GO:0005216 ... Q15878 36720859
    39804 7xlq:D (3.1) BS01 CA ? GO:0005245 ... P54289 36720859
    39805 7xnc:A (2.1) BS02 CA 2.7.12.2 GO:0004672 ... Q02750 36622773
    39806 7xnc:A (2.1) BS03 CA 2.7.12.2 GO:0004672 ... Q02750 36622773
    39807 7xqx:A (3.36) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    39808 7xqx:C (3.36) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    39809 7xqy:A (2.35) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    39810 7xqy:C (2.35) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    39811 7xr0:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    39812 7xr0:C (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    39813 7xr1:A (2.81) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    39814 7xr1:C (2.81) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    39815 7xrk:A (2.3) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    39816 7xrk:D (2.3) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    39817 7xrl:A (1.75) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    39818 7xrl:D (1.75) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    39819 7xrt:A (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39820 7xrt:B (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39821 7xrt:C (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39822 7xrt:D (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39823 7xrt:E (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39824 7xrt:F (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39825 7xrt:G (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39826 7xrt:H (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39827 7xrt:I (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39828 7xrt:J (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39829 7xrv:A (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39830 7xrv:B (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39831 7xrv:D (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39832 7xrv:E (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39833 7xrv:F (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39834 7xrv:G (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39835 7xrv:H (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39836 7xrv:I (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39837 7xrv:J (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    39838 7xrx:A (1.882) BS01 CA ? GO:0046872 ... Q9HW32 N/A
    39839 7xrx:B (1.882) BS01 CA ? GO:0046872 ... Q9HW32 N/A
    39840 7xrx:C (1.882) BS01 CA ? GO:0046872 ... Q9HW32 N/A
    39841 7xvr:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    39842 7xvr:B (2.4) BS01 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    39843 7xvu:A (1.6) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    39844 7xvu:B (1.6) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    39845 7xvv:A (1.85) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    39846 7xvv:B (1.85) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    39847 7xvw:A (1.94) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    39848 7xvw:B (1.94) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNP4 36191180
    39849 7xw2:A (3.04) BS02 CA 3.1.26.3 GO:0000122 ... Q9UPY3 36813958
    39850 7xx6:O (3.39) BS03 CA ? GO:0000786 ... P68431 N/A
    39851 7xx7:G () BS03 CA N/A N/A N/A N/A
    39852 7xx7:Q () BS03 CA N/A N/A N/A N/A
    39853 7xyd:A (2.58) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    39854 7xyd:B (2.58) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    39855 7y0e:A (2.39) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    39856 7y0e:B (2.39) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    39857 7y0f:A (2.6) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    39858 7y0f:B (2.6) BS01 CA 3.4.21.122 GO:0016020 ... O15393 37990007
    39859 7y1t:A (3.24) BS01 CA ? GO:0007155 ... P06756 36008481
    39860 7y1t:A (3.24) BS02 CA ? GO:0007155 ... P06756 36008481
    39861 7y1t:A (3.24) BS03 CA ? GO:0007155 ... P06756 36008481
    39862 7y1t:A (3.24) BS04 CA ? GO:0007155 ... P06756 36008481
    39863 7y1t:B (3.24) BS01 CA ? N/A P26012 36008481
    39864 7y3u:A (2.5) BS02 CA 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    39865 7y3u:B (2.5) BS02 CA 1.11.1.7 GO:0004601 ... A0A8B9XNB5 N/A
    39866 7y5n:C (3.45) BS02 CA 3.4.24.79 GO:0004175 ... Q13219 36550107
    39867 7y5n:C (3.45) BS03 CA 3.4.24.79 GO:0004175 ... Q13219 36550107
    39868 7y5n:C (3.45) BS04 CA 3.4.24.79 GO:0004175 ... Q13219 36550107
    39869 7y5n:C (3.45) BS05 CA 3.4.24.79 GO:0004175 ... Q13219 36550107
    39870 7y5n:C (3.45) BS06 CA 3.4.24.79 GO:0004175 ... Q13219 36550107
    39871 7y5n:C (3.45) BS07 CA 3.4.24.79 GO:0004175 ... Q13219 36550107
    39872 7y5n:C (3.45) BS08 CA 3.4.24.79 GO:0004175 ... Q13219 36550107
    39873 7y6m:C (2.703) BS02 CA 3.4.21.- GO:0004252 ... A0A7H0M7J5 N/A
    39874 7y6m:C (2.703) BS03 CA 3.4.21.- GO:0004252 ... A0A7H0M7J5 N/A
    39875 7y6m:D (2.703) BS02 CA 3.4.21.- GO:0004252 ... A0A7H0M7J5 N/A
    39876 7y6m:D (2.703) BS03 CA 3.4.21.- GO:0004252 ... A0A7H0M7J5 N/A
    39877 7y7p:A (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39878 7y7p:A (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39879 7y7p:B (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39880 7y7p:B (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39881 7y7q:A (2.05) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39882 7y7q:A (2.05) BS05 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39883 7y7q:B (2.05) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39884 7y7q:B (2.05) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39885 7y7r:A (2.1) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39886 7y7r:A (2.1) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39887 7y7r:B (2.1) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39888 7y7r:B (2.1) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39889 7y7s:A (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39890 7y7s:A (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39891 7y7s:B (2.7) BS03 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39892 7y7s:B (2.7) BS04 CA 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    39893 7y9o:A (1.84) BS02 CA ? GO:0004497 ... M5PFT9 N/A
    39894 7y9o:A (1.84) BS03 CA ? GO:0004497 ... M5PFT9 N/A
    39895 7yag:A (3.1) BS02 CA 7.2.2.10 GO:0000139 ... P98194 36867705
    39896 7yah:A (3.12) BS02 CA 7.2.2.10 GO:0000139 ... P98194 36867705
    39897 7yai:A (3.14) BS02 CA 7.2.2.10 GO:0000139 ... P98194 36867705
    39898 7yd2:B (1.61) BS04 CA 3.1.1.- GO:0016787 ... G9I933 37468532
    39899 7yg5:A (3.0) BS09 CA ? GO:0005216 ... Q15878 38901222
    39900 7yg5:D (3.0) BS01 CA ? N/A P54289 38901222
    39901 7ygv:A (2.8) BS01 CA ? GO:0005509 ... Q9D4J1 36862489
    39902 7ygv:A (2.8) BS02 CA ? GO:0005509 ... Q9D4J1 36862489
    39903 7yiv:A (3.18) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39904 7yiv:B (3.18) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39905 7yiv:C (3.18) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39906 7yiv:D (3.18) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39907 7yiv:E (3.18) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39908 7yiv:F (3.18) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39909 7yiv:G (3.18) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39910 7yiv:H (3.18) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39911 7yiw:A (2.89) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39912 7yiw:B (2.89) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39913 7yiw:C (2.89) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39914 7yiw:D (2.89) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39915 7yiw:E (2.89) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39916 7yiw:F (2.89) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39917 7yiw:G (2.89) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39918 7yiw:H (2.89) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39919 7yix:A (2.96) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39920 7yix:B (2.96) BS03 CA 3.1.3.1
    3.9.1.1    		 GO:0001501 ... P05186 37422472
    39921 7yl4:A (2.5) BS01 CA ? N/A S6FKX6 36602978
    39922 7yl4:B (2.5) BS01 CA ? N/A S6FKX6 36602978
    39923 7yl5:A (3.0) BS01 CA ? N/A S6FKX6 36602978
    39924 7yl5:B (3.0) BS01 CA ? N/A S6FKX6 36602978
    39925 7yl6:A (2.95) BS03 CA ? N/A S6FKX6 36602978
    39926 7yl6:B (2.95) BS03 CA ? N/A S6FKX6 36602978
    39927 7ym0:A (2.91) BS01 CA ? GO:0006629 ... A0A0U4VTN7 36307380
    39928 7ym0:B (2.91) BS01 CA ? GO:0006629 ... A0A0U4VTN7 36307380
    39929 7yne:B (2.7) BS01 CA ? GO:0051015 ... Q94707 36252034
    39930 7yne:B (2.7) BS02 CA ? GO:0051015 ... Q94707 36252034
    39931 7yne:D (2.7) BS01 CA ? GO:0051015 ... Q94707 36252034
    39932 7yne:D (2.7) BS02 CA ? GO:0051015 ... Q94707 36252034
    39933 7yne:F (2.7) BS01 CA ? GO:0051015 ... Q94707 36252034
    39934 7yne:F (2.7) BS02 CA ? GO:0051015 ... Q94707 36252034
    39935 7yne:H (2.7) BS01 CA ? GO:0051015 ... Q94707 36252034
    39936 7yne:H (2.7) BS02 CA ? GO:0051015 ... Q94707 36252034
    39937 7ynz:A (3.5) BS02 CA ? GO:0005216 ... Q12791 N/A
    39938 7ynz:A (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    39939 7ynz:C (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    39940 7ynz:C (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    39941 7ynz:E (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    39942 7ynz:E (3.5) BS02 CA ? GO:0005216 ... Q12791 N/A
    39943 7ynz:G (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    39944 7ynz:G (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    39945 7yo0:A (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    39946 7yo0:A (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    39947 7yo0:C (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    39948 7yo0:C (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    39949 7yo0:E (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    39950 7yo0:E (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    39951 7yo0:G (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    39952 7yo0:G (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    39953 7yo1:A (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    39954 7yo1:A (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    39955 7yo1:C (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    39956 7yo1:C (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    39957 7yo1:E (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    39958 7yo1:E (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    39959 7yo1:G (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    39960 7yo1:G (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    39961 7yo3:A (3.1) BS02 CA ? GO:0005216 ... Q12791 N/A
    39962 7yo3:A (3.1) BS03 CA ? GO:0005216 ... Q12791 N/A
    39963 7yo5:A (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    39964 7yo5:A (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    39965 7yo5:B (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    39966 7yo5:B (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    39967 7yo5:C (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    39968 7yo5:C (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    39969 7yo5:D (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    39970 7yo5:D (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    39971 7yq2:O (1.9) BS01 CA ? GO:0009654 ... P0A431 36334624
    39972 7yq2:c (1.9) BS02 CA ? GO:0005737 ... Q8DIF8 36334624
    39973 7yq2:o (1.9) BS01 CA ? GO:0009654 ... P0A431 36334624
    39974 7yq7:O (1.9) BS01 CA ? GO:0009654 ... P0A431 36334624
    39975 7yq7:c (1.9) BS02 CA ? GO:0005737 ... Q8DIF8 36334624
    39976 7yq7:o (1.9) BS01 CA ? GO:0009654 ... P0A431 36334624
    39977 7yqs:A (1.25) BS05 CA ? GO:0016829 ... A0A8D5PZ14 38382672
    39978 7ytq:A (1.6) BS02 CA ? N/A Q9UJ71 N/A
    39979 7ytq:B (1.6) BS02 CA ? N/A Q9UJ71 N/A
    39980 7ytq:C (1.6) BS02 CA ? N/A Q9UJ71 N/A
    39981 7ytq:D (1.6) BS03 CA ? N/A Q9UJ71 N/A
    39982 7yvq:A (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39983 7yvq:A (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39984 7yvq:A (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39985 7yvq:B (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39986 7yvq:B (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39987 7yvq:B (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39988 7yvq:C (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39989 7yvq:C (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39990 7yvq:C (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39991 7yvq:D (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39992 7yvq:D (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39993 7yvq:D (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39994 7yvq:E (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39995 7yvq:E (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39996 7yvq:E (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39997 7yvq:F (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39998 7yvq:F (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39999 7yvq:F (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    40000 7yvq:G (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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