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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39601 7wpr:W (4.39) BS01 CA ? N/A P04275 35148377
    39602 7wpr:X (4.39) BS01 CA ? N/A P04275 35148377
    39603 7wpr:Y (4.39) BS01 CA ? N/A P04275 35148377
    39604 7wpr:Z (4.39) BS01 CA ? N/A P04275 35148377
    39605 7wpr:a (4.39) BS01 CA ? N/A P04275 35148377
    39606 7wpr:b (4.39) BS01 CA ? N/A P04275 35148377
    39607 7wpr:c (4.39) BS01 CA ? N/A P04275 35148377
    39608 7wpr:d (4.39) BS01 CA ? N/A P04275 35148377
    39609 7wpr:e (4.39) BS01 CA ? N/A P04275 35148377
    39610 7wpr:f (4.39) BS01 CA ? N/A P04275 35148377
    39611 7wps:A (4.32) BS01 CA ? N/A P04275 35148377
    39612 7wps:A (4.32) BS02 CA ? N/A P04275 35148377
    39613 7wps:B (4.32) BS01 CA ? N/A P04275 35148377
    39614 7wps:B (4.32) BS02 CA ? N/A P04275 35148377
    39615 7wps:C (4.32) BS01 CA ? N/A P04275 35148377
    39616 7wps:D (4.32) BS01 CA ? N/A P04275 35148377
    39617 7wps:E (4.32) BS01 CA ? N/A P04275 35148377
    39618 7wps:E (4.32) BS02 CA ? N/A P04275 35148377
    39619 7wps:F (4.32) BS01 CA ? N/A P04275 35148377
    39620 7wps:G (4.32) BS01 CA ? N/A P04275 35148377
    39621 7wps:G (4.32) BS02 CA ? N/A P04275 35148377
    39622 7wps:H (4.32) BS01 CA ? N/A P04275 35148377
    39623 7wps:I (4.32) BS01 CA ? N/A P04275 35148377
    39624 7wps:I (4.32) BS02 CA ? N/A P04275 35148377
    39625 7wps:J (4.32) BS01 CA ? N/A P04275 35148377
    39626 7wps:K (4.32) BS01 CA ? N/A P04275 35148377
    39627 7wps:K (4.32) BS02 CA ? N/A P04275 35148377
    39628 7wps:L (4.32) BS01 CA ? N/A P04275 35148377
    39629 7wps:M (4.32) BS01 CA ? N/A P04275 35148377
    39630 7wps:M (4.32) BS02 CA ? N/A P04275 35148377
    39631 7wps:N (4.32) BS01 CA ? N/A P04275 35148377
    39632 7wps:O (4.32) BS01 CA ? N/A P04275 35148377
    39633 7wps:O (4.32) BS02 CA ? N/A P04275 35148377
    39634 7wps:P (4.32) BS01 CA ? N/A P04275 35148377
    39635 7wps:Q (4.32) BS01 CA ? N/A P04275 35148377
    39636 7wps:Q (4.32) BS02 CA ? N/A P04275 35148377
    39637 7wps:R (4.32) BS01 CA ? N/A P04275 35148377
    39638 7wps:S (4.32) BS01 CA ? N/A P04275 35148377
    39639 7wps:S (4.32) BS02 CA ? N/A P04275 35148377
    39640 7wps:T (4.32) BS01 CA ? N/A P04275 35148377
    39641 7wps:U (4.32) BS01 CA ? N/A P04275 35148377
    39642 7wps:U (4.32) BS02 CA ? N/A P04275 35148377
    39643 7wps:V (4.32) BS01 CA ? N/A P04275 35148377
    39644 7wps:W (4.32) BS01 CA ? N/A P04275 35148377
    39645 7wps:W (4.32) BS02 CA ? N/A P04275 35148377
    39646 7wps:X (4.32) BS01 CA ? N/A P04275 35148377
    39647 7wps:Y (4.32) BS01 CA ? N/A P04275 35148377
    39648 7wps:Y (4.32) BS02 CA ? N/A P04275 35148377
    39649 7wps:Z (4.32) BS01 CA ? N/A P04275 35148377
    39650 7wps:a (4.32) BS01 CA ? N/A P04275 35148377
    39651 7wps:a (4.32) BS02 CA ? N/A P04275 35148377
    39652 7wps:b (4.32) BS01 CA ? N/A P04275 35148377
    39653 7wqt:A (4.3) BS01 CA ? N/A P04275 35148377
    39654 7wqt:A (4.3) BS02 CA ? N/A P04275 35148377
    39655 7wqt:B (4.3) BS01 CA ? N/A P04275 35148377
    39656 7wqt:B (4.3) BS02 CA ? N/A P04275 35148377
    39657 7wqt:C (4.3) BS01 CA ? N/A P04275 35148377
    39658 7wqt:D (4.3) BS01 CA ? N/A P04275 35148377
    39659 7wqt:E (4.3) BS01 CA ? N/A P04275 35148377
    39660 7wqt:E (4.3) BS02 CA ? N/A P04275 35148377
    39661 7wqt:F (4.3) BS01 CA ? N/A P04275 35148377
    39662 7wqt:F (4.3) BS02 CA ? N/A P04275 35148377
    39663 7wqt:G (4.3) BS01 CA ? N/A P04275 35148377
    39664 7wqt:G (4.3) BS02 CA ? N/A P04275 35148377
    39665 7wqt:H (4.3) BS01 CA ? N/A P04275 35148377
    39666 7wqt:H (4.3) BS02 CA ? N/A P04275 35148377
    39667 7wqt:I (4.3) BS01 CA ? N/A P04275 35148377
    39668 7wqt:I (4.3) BS02 CA ? N/A P04275 35148377
    39669 7wqt:J (4.3) BS01 CA ? N/A P04275 35148377
    39670 7wqt:J (4.3) BS02 CA ? N/A P04275 35148377
    39671 7wqt:K (4.3) BS01 CA ? N/A P04275 35148377
    39672 7wqt:K (4.3) BS02 CA ? N/A P04275 35148377
    39673 7wqt:L (4.3) BS01 CA ? N/A P04275 35148377
    39674 7wqt:L (4.3) BS02 CA ? N/A P04275 35148377
    39675 7wqt:M (4.3) BS01 CA ? N/A P04275 35148377
    39676 7wqt:M (4.3) BS02 CA ? N/A P04275 35148377
    39677 7wqt:N (4.3) BS01 CA ? N/A P04275 35148377
    39678 7wqt:N (4.3) BS02 CA ? N/A P04275 35148377
    39679 7wqt:O (4.3) BS01 CA ? N/A P04275 35148377
    39680 7wqt:O (4.3) BS02 CA ? N/A P04275 35148377
    39681 7wqt:P (4.3) BS01 CA ? N/A P04275 35148377
    39682 7wqt:P (4.3) BS02 CA ? N/A P04275 35148377
    39683 7wqt:Q (4.3) BS01 CA ? N/A P04275 35148377
    39684 7wqt:Q (4.3) BS02 CA ? N/A P04275 35148377
    39685 7wqt:R (4.3) BS01 CA ? N/A P04275 35148377
    39686 7wqt:R (4.3) BS02 CA ? N/A P04275 35148377
    39687 7wqt:S (4.3) BS01 CA ? N/A P04275 35148377
    39688 7wqt:T (4.3) BS01 CA ? N/A P04275 35148377
    39689 7wqt:U (4.3) BS01 CA ? N/A P04275 35148377
    39690 7wqt:V (4.3) BS01 CA ? N/A P04275 35148377
    39691 7wqt:W (4.3) BS01 CA ? N/A P04275 35148377
    39692 7wqt:X (4.3) BS01 CA ? N/A P04275 35148377
    39693 7wqt:Y (4.3) BS01 CA ? N/A P04275 35148377
    39694 7wqt:Z (4.3) BS01 CA ? N/A P04275 35148377
    39695 7wqt:a (4.3) BS01 CA ? N/A P04275 35148377
    39696 7wqt:b (4.3) BS01 CA ? N/A P04275 35148377
    39697 7wqt:c (4.3) BS01 CA ? N/A P04275 35148377
    39698 7wqt:d (4.3) BS01 CA ? N/A P04275 35148377
    39699 7wqt:e (4.3) BS01 CA ? N/A P04275 35148377
    39700 7wqt:f (4.3) BS01 CA ? N/A P04275 35148377
    39701 7wrb:A (2.88) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39702 7wrb:B (2.88) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39703 7wrb:C (2.88) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39704 7wrb:D (2.88) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39705 7wrc:A (3.21) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39706 7wrc:B (3.21) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39707 7wrc:C (3.21) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39708 7wrc:D (3.21) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39709 7wrd:A (2.98) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39710 7wrd:B (2.98) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39711 7wrd:C (2.98) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39712 7wrd:D (2.98) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39713 7wre:A (2.52) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39714 7wre:B (2.52) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39715 7wre:C (2.52) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39716 7wre:D (2.52) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39717 7wrf:A (3.04) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39718 7wrf:B (3.04) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39719 7wrf:C (3.04) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39720 7wrf:D (3.04) BS01 CA ? GO:0005216 ... Q8R4D5 35662242
    39721 7wrk:A (1.78) BS01 CA ? GO:0046872 ... Q5SH57 36048084
    39722 7wrk:A (1.78) BS02 CA ? GO:0046872 ... Q5SH57 36048084
    39723 7wrr:A (2.01) BS02 CA 2.2.1.1 GO:0003824 ... Q5SM35 36441206
    39724 7wrr:B (2.01) BS03 CA 2.2.1.1 GO:0003824 ... Q5SM35 36441206
    39725 7wrr:C (2.01) BS02 CA 2.2.1.1 GO:0003824 ... Q5SM35 36441206
    39726 7wrr:D (2.01) BS03 CA 2.2.1.1 GO:0003824 ... Q5SM35 36441206
    39727 7wrt:A (2.25) BS02 CA 2.2.1.1 GO:0003824 ... Q5SM35 36441206
    39728 7wrt:B (2.25) BS05 CA 2.2.1.1 GO:0003824 ... Q5SM35 36441206
    39729 7wrt:C (2.25) BS02 CA 2.2.1.1 GO:0003824 ... Q5SM35 36441206
    39730 7wrt:D (2.25) BS04 CA 2.2.1.1 GO:0003824 ... Q5SM35 36441206
    39731 7wss:A (2.19) BS02 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39732 7wss:A (2.19) BS03 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39733 7wss:A (2.19) BS04 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39734 7wss:A (2.19) BS05 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39735 7wss:B (2.19) BS02 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39736 7wss:B (2.19) BS03 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39737 7wss:B (2.19) BS04 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39738 7wss:B (2.19) BS05 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39739 7ww4:A (2.23006) BS01 CA ? GO:0004553 ... A0A1G7XNR7 N/A
    39740 7ww4:A (2.23006) BS02 CA ? GO:0004553 ... A0A1G7XNR7 N/A
    39741 7wwn:A (2.05) BS01 CA ? GO:0046872 ... Q5SH57 36048084
    39742 7wwn:A (2.05) BS02 CA ? GO:0046872 ... Q5SH57 36048084
    39743 7wwo:A (2.17) BS01 CA ? GO:0046872 ... Q5SH57 36048084
    39744 7wwo:A (2.17) BS02 CA ? GO:0046872 ... Q5SH57 36048084
    39745 7wwo:A (2.17) BS03 CA ? GO:0046872 ... Q5SH57 36048084
    39746 7wwo:B (2.17) BS01 CA ? GO:0046872 ... Q5SH57 36048084
    39747 7wwo:B (2.17) BS02 CA ? GO:0046872 ... Q5SH57 36048084
    39748 7wwo:B (2.17) BS03 CA ? GO:0046872 ... Q5SH57 36048084
    39749 7wxx:A (1.5) BS02 CA 3.4.24.23 GO:0004222 ... P09237 36137271
    39750 7wxx:A (1.5) BS03 CA 3.4.24.23 GO:0004222 ... P09237 36137271
    39751 7wyj:A (1.89) BS01 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    39752 7x2n:A (1.72) BS02 CA N/A N/A N/A N/A
    39753 7x2s:A (1.92) BS04 CA N/A N/A N/A N/A
    39754 7x2x:A (1.58) BS03 CA N/A N/A N/A N/A
    39755 7x36:A (1.92) BS01 CA N/A N/A N/A N/A
    39756 7x36:B (1.92) BS01 CA N/A N/A N/A N/A
    39757 7x36:C (1.92) BS01 CA N/A N/A N/A N/A
    39758 7x36:D (1.92) BS01 CA N/A N/A N/A N/A
    39759 7x6c:A (3.15) BS03 CA ? GO:0005216 ... Q9UL62 37137991
    39760 7x6c:B (3.15) BS05 CA ? GO:0005216 ... Q9UL62 37137991
    39761 7x6c:C (3.15) BS03 CA ? GO:0005216 ... Q9UL62 37137991
    39762 7x6c:D (3.15) BS05 CA ? GO:0005216 ... Q9UL62 37137991
    39763 7x6i:A (3.93) BS03 CA ? GO:0005216 ... Q9UL62 37137991
    39764 7x6i:B (3.93) BS04 CA ? GO:0005216 ... Q9UL62 37137991
    39765 7x6i:C (3.93) BS04 CA ? GO:0005216 ... Q9UL62 37137991
    39766 7x6i:D (3.93) BS05 CA ? GO:0005216 ... Q9UL62 37137991
    39767 7x79:A (1.8) BS02 CA 3.4.22.52 GO:0001533 ... P07384 N/A
    39768 7x79:A (1.8) BS03 CA 3.4.22.52 GO:0001533 ... P07384 N/A
    39769 7x7h:A (2.0) BS01 CA ? GO:0000976 ... Q9KM69 36987873
    39770 7x7h:C (2.0) BS01 CA ? GO:0000976 ... Q9KM69 36987873
    39771 7x87:B (1.79) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39772 7x87:B (1.79) BS02 CA ? GO:0004553 ... I0AIT9 35065074
    39773 7xeb:A (2.39) BS06 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39774 7xeb:A (2.39) BS07 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39775 7xeb:A (2.39) BS08 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39776 7xeb:A (2.39) BS09 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39777 7xeb:B (2.39) BS06 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39778 7xeb:B (2.39) BS07 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39779 7xeb:B (2.39) BS08 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39780 7xeb:B (2.39) BS09 CA 3.4.24.3 GO:0004222 ... F7IZI6 35679897
    39781 7xgj:A (2.8) BS04 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39782 7xgj:A (2.8) BS05 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39783 7xgj:A (2.8) BS06 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39784 7xgj:A (2.8) BS07 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39785 7xgj:B (2.8) BS03 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39786 7xgj:B (2.8) BS06 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39787 7xgj:B (2.8) BS07 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39788 7xgj:B (2.8) BS08 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39789 7xgj:C (2.8) BS04 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39790 7xgj:C (2.8) BS05 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39791 7xjo:A (2.0) BS05 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39792 7xjo:A (2.0) BS06 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39793 7xjo:A (2.0) BS07 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39794 7xjo:A (2.0) BS08 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39795 7xjo:B (2.0) BS02 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39796 7xjo:B (2.0) BS05 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39797 7xjo:B (2.0) BS06 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39798 7xjo:B (2.0) BS07 CA 3.4.24.24 GO:0004222 ... P08253 35687819
    39799 7xk4:E (3.1) BS02 CA 7.2.1.1 GO:0005886 ... A5F5Y5 35882843
    39800 7xks:A (1.78) BS01 CA 4.2.2.2 GO:0000272 ... A0A0P0J4R7 36613981
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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