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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39401 7vvd:E (3.134) BS01 CA ? GO:0000086 ... P0DP23 N/A
    39402 7vvd:E (3.134) BS02 CA ? GO:0000086 ... P0DP23 N/A
    39403 7vve:A (1.98) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 N/A
    39404 7vve:B (1.98) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 N/A
    39405 7vvh:C (2.296) BS01 CA ? GO:0000086 ... P0DP23 N/A
    39406 7vvh:C (2.296) BS02 CA ? GO:0000086 ... P0DP23 N/A
    39407 7vzg:A (2.61) BS15 CA ? GO:0009579 ... G2LDR8 36517472
    39408 7vzg:a (2.61) BS19 CA ? GO:0009579 ... G2LDR8 36517472
    39409 7vzr:A (2.22) BS15 CA ? GO:0009579 ... G2LDR8 N/A
    39410 7vzr:a (2.22) BS19 CA ? GO:0009579 ... G2LDR8 N/A
    39411 7w19:A (1.9) BS01 CA ? GO:0005525 ... A5Y459 N/A
    39412 7w19:A (1.9) BS02 CA ? GO:0005525 ... A5Y459 N/A
    39413 7w19:B (1.9) BS01 CA ? GO:0005525 ... A5Y459 N/A
    39414 7w2a:A (1.6) BS01 CA N/A GO:0004252 ... N/A 36209912
    39415 7w2a:A (1.6) BS02 CA N/A GO:0004252 ... N/A 36209912
    39416 7w2a:A (1.6) BS03 CA N/A GO:0004252 ... N/A 36209912
    39417 7w2a:B (1.6) BS01 CA N/A GO:0004252 ... N/A 36209912
    39418 7w2a:B (1.6) BS02 CA N/A GO:0004252 ... N/A 36209912
    39419 7w2a:B (1.6) BS03 CA N/A GO:0004252 ... N/A 36209912
    39420 7w2a:B (1.6) BS04 CA N/A GO:0004252 ... N/A 36209912
    39421 7w2s:A (1.85) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    39422 7w2t:A (2.15) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    39423 7w2t:B (2.15) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    39424 7w2v:A (1.8) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    39425 7w2w:A (1.79) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    39426 7w2x:A (1.8) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    39427 7w45:A (1.94) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 N/A
    39428 7w45:A (1.94) BS02 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 N/A
    39429 7w45:B (1.94) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 N/A
    39430 7w45:B (1.94) BS02 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 N/A
    39431 7w4z:B (1.15) BS01 CA ? GO:0051015 ... Q94707 36252034
    39432 7w4z:B (1.15) BS02 CA ? GO:0051015 ... Q94707 36252034
    39433 7w50:B (1.15) BS01 CA ? GO:0051015 ... Q94707 36252034
    39434 7w50:B (1.15) BS02 CA ? GO:0051015 ... Q94707 36252034
    39435 7w51:B (1.2) BS01 CA ? GO:0051015 ... Q94707 36252034
    39436 7w51:B (1.2) BS02 CA ? GO:0051015 ... Q94707 36252034
    39437 7w52:B (2.001) BS01 CA ? GO:0051015 ... Q94707 36252034
    39438 7w52:B (2.001) BS02 CA ? GO:0051015 ... Q94707 36252034
    39439 7w52:D (2.001) BS01 CA ? GO:0051015 ... Q94707 36252034
    39440 7w52:D (2.001) BS02 CA ? GO:0051015 ... Q94707 36252034
    39441 7w52:F (2.001) BS01 CA ? GO:0051015 ... Q94707 36252034
    39442 7w52:F (2.001) BS02 CA ? GO:0051015 ... Q94707 36252034
    39443 7w52:H (2.001) BS01 CA ? GO:0051015 ... Q94707 36252034
    39444 7w52:H (2.001) BS02 CA ? GO:0051015 ... Q94707 36252034
    39445 7w64:A (2.3) BS03 CA ? GO:0003674 ... P23476 36240278
    39446 7w64:D (2.3) BS03 CA ? GO:0003674 ... P23476 36240278
    39447 7w64:E (2.3) BS03 CA ? GO:0003674 ... P23476 36240278
    39448 7w6b:A (2.984) BS02 CA N/A N/A N/A 35561142
    39449 7w72:K (3.1) BS01 CA 3.-.-.- GO:0003923 ... Q92643 35165458
    39450 7w7o:A (1.59) BS02 CA 3.4.22.52 GO:0004198 ... P07384 N/A
    39451 7w7o:A (1.59) BS03 CA 3.4.22.52 GO:0004198 ... P07384 N/A
    39452 7w7t:A (3.4) BS01 CA 7.2.2.10 GO:0000045 ... P16615 36476867
    39453 7w7t:A (3.4) BS02 CA 7.2.2.10 GO:0000045 ... P16615 36476867
    39454 7w9h:A (2.28) BS01 CA ? GO:0000160 ... Q9I4N3 38058307
    39455 7w9h:B (2.28) BS01 CA ? GO:0000160 ... Q9I4N3 38058307
    39456 7w9h:B (2.28) BS02 CA ? GO:0000160 ... Q9I4N3 38058307
    39457 7w9q:A (1.599) BS02 CA ? N/A P02766 36472374
    39458 7wa0:A (1.77) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    39459 7wa2:A (1.52) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    39460 7wb6:A (1.48) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    39461 7wb7:A (1.45) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    39462 7wb8:A (1.38) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    39463 7wb9:A (1.56) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    39464 7wba:A (1.45) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    39465 7wbc:A (2.0) BS02 CA ? GO:0000166 ... A0A098BU97 N/A
    39466 7wbc:B (2.0) BS02 CA ? GO:0000166 ... A0A098BU97 N/A
    39467 7wbo:A (1.6) BS01 CA ? GO:0005509 ... I2DDG2 36602420
    39468 7wbo:A (1.6) BS02 CA ? GO:0005509 ... I2DDG2 36602420
    39469 7wbo:A (1.6) BS03 CA ? GO:0005509 ... I2DDG2 36602420
    39470 7wbo:A (1.6) BS04 CA ? GO:0005509 ... I2DDG2 36602420
    39471 7wca:A (1.78) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39472 7wca:A (1.78) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39473 7wca:B (1.78) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39474 7wca:B (1.78) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39475 7wca:C (1.78) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39476 7wca:D (1.78) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39477 7wca:D (1.78) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39478 7wdb:A (2.4) BS03 CA ? GO:0005216 ... Q9UL62 35821012
    39479 7wdb:B (2.4) BS03 CA ? GO:0005216 ... Q9UL62 35821012
    39480 7wdb:C (2.4) BS04 CA ? GO:0005216 ... Q9UL62 35821012
    39481 7wdb:D (2.4) BS04 CA ? GO:0005216 ... Q9UL62 35821012
    39482 7wdt:A (1.65) BS03 CA 3.2.1.52 GO:0004553 ... D4QAP5 36864192
    39483 7wdu:A (2.23) BS03 CA 3.2.1.52 GO:0004553 ... D4QAP5 36864192
    39484 7wgr:A (2.92) BS01 CA 1.2.4.2 GO:0016624 ... Q02218 N/A
    39485 7wgr:B (2.92) BS02 CA 1.2.4.2 GO:0016624 ... Q02218 N/A
    39486 7whf:C (2.1) BS01 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39487 7whf:C (2.1) BS02 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39488 7whf:C (2.1) BS03 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39489 7whf:C (2.1) BS04 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39490 7whf:C (2.1) BS05 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39491 7whf:C (2.1) BS06 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39492 7whf:C (2.1) BS07 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39493 7whf:C (2.1) BS08 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39494 7whf:G (2.1) BS01 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39495 7whf:G (2.1) BS02 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39496 7whf:G (2.1) BS03 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39497 7whf:G (2.1) BS04 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39498 7whf:G (2.1) BS05 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39499 7whf:G (2.1) BS06 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39500 7whf:G (2.1) BS07 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39501 7whf:G (2.1) BS08 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    39502 7whg:G (3.25) BS01 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    39503 7whg:G (3.25) BS02 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    39504 7whg:G (3.25) BS03 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    39505 7whg:G (3.25) BS04 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    39506 7whg:G (3.25) BS05 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    39507 7whg:G (3.25) BS06 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    39508 7wld:K (2.53) BS01 CA 3.-.-.- GO:0003923 ... Q92643 35551457
    39509 7wlj:A (3.9) BS02 CA ? GO:0005216 ... Q9P0X4 35440630
    39510 7wlk:A (3.6) BS02 CA ? GO:0005216 ... Q9P0X4 35440630
    39511 7wmd:A (2.0) BS01 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    39512 7wmd:A (2.0) BS02 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    39513 7wmd:A (2.0) BS03 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    39514 7wmk:A (1.47) BS02 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    39515 7wn3:A (3.29) BS01 CA ? N/A P04275 35169124
    39516 7wn3:A (3.29) BS02 CA ? N/A P04275 35169124
    39517 7wn3:B (3.29) BS01 CA ? N/A P04275 35169124
    39518 7wn3:B (3.29) BS02 CA ? N/A P04275 35169124
    39519 7wn3:C (3.29) BS01 CA ? N/A P04275 35169124
    39520 7wn3:D (3.29) BS01 CA ? N/A P04275 35169124
    39521 7wn3:E (3.29) BS01 CA ? N/A P04275 35169124
    39522 7wn3:E (3.29) BS02 CA ? N/A P04275 35169124
    39523 7wn3:F (3.29) BS01 CA ? N/A P04275 35169124
    39524 7wn3:G (3.29) BS01 CA ? N/A P04275 35169124
    39525 7wn3:G (3.29) BS02 CA ? N/A P04275 35169124
    39526 7wn3:H (3.29) BS01 CA ? N/A P04275 35169124
    39527 7wn4:E (3.4) BS01 CA ? N/A P04275 35169124
    39528 7wn4:E (3.4) BS02 CA ? N/A P04275 35169124
    39529 7wn4:F (3.4) BS01 CA ? N/A P04275 35169124
    39530 7wn4:G (3.4) BS01 CA ? N/A P04275 35169124
    39531 7wn4:G (3.4) BS02 CA ? N/A P04275 35169124
    39532 7wn4:H (3.4) BS01 CA ? N/A P04275 35169124
    39533 7wn6:A (3.29) BS01 CA ? N/A P04275 35169124
    39534 7wn6:A (3.29) BS02 CA ? N/A P04275 35169124
    39535 7wn6:B (3.29) BS01 CA ? N/A P04275 35169124
    39536 7wn6:B (3.29) BS02 CA ? N/A P04275 35169124
    39537 7wn6:C (3.29) BS01 CA ? N/A P04275 35169124
    39538 7wn6:D (3.29) BS01 CA ? N/A P04275 35169124
    39539 7wn6:E (3.29) BS01 CA ? N/A P04275 35169124
    39540 7wn6:E (3.29) BS02 CA ? N/A P04275 35169124
    39541 7wn6:F (3.29) BS01 CA ? N/A P04275 35169124
    39542 7wn6:G (3.29) BS01 CA ? N/A P04275 35169124
    39543 7wn6:G (3.29) BS02 CA ? N/A P04275 35169124
    39544 7wn6:H (3.29) BS01 CA ? N/A P04275 35169124
    39545 7wpp:E (2.85) BS01 CA ? N/A P04275 35148377
    39546 7wpp:E (2.85) BS02 CA ? N/A P04275 35148377
    39547 7wpp:F (2.85) BS01 CA ? N/A P04275 35148377
    39548 7wpp:G (2.85) BS01 CA ? N/A P04275 35148377
    39549 7wpp:G (2.85) BS02 CA ? N/A P04275 35148377
    39550 7wpp:H (2.85) BS01 CA ? N/A P04275 35148377
    39551 7wpq:A (3.267) BS01 CA ? N/A P04275 35148377
    39552 7wpq:A (3.267) BS02 CA ? N/A P04275 35148377
    39553 7wpq:B (3.267) BS01 CA ? N/A P04275 35148377
    39554 7wpq:B (3.267) BS02 CA ? N/A P04275 35148377
    39555 7wpq:C (3.267) BS01 CA ? N/A P04275 35148377
    39556 7wpq:D (3.267) BS01 CA ? N/A P04275 35148377
    39557 7wpq:E (3.267) BS01 CA ? N/A P04275 35148377
    39558 7wpq:E (3.267) BS02 CA ? N/A P04275 35148377
    39559 7wpq:F (3.267) BS01 CA ? N/A P04275 35148377
    39560 7wpq:G (3.267) BS01 CA ? N/A P04275 35148377
    39561 7wpq:G (3.267) BS02 CA ? N/A P04275 35148377
    39562 7wpq:H (3.267) BS01 CA ? N/A P04275 35148377
    39563 7wpr:A (4.39) BS01 CA ? N/A P04275 35148377
    39564 7wpr:A (4.39) BS02 CA ? N/A P04275 35148377
    39565 7wpr:B (4.39) BS01 CA ? N/A P04275 35148377
    39566 7wpr:B (4.39) BS02 CA ? N/A P04275 35148377
    39567 7wpr:C (4.39) BS01 CA ? N/A P04275 35148377
    39568 7wpr:D (4.39) BS01 CA ? N/A P04275 35148377
    39569 7wpr:E (4.39) BS01 CA ? N/A P04275 35148377
    39570 7wpr:E (4.39) BS02 CA ? N/A P04275 35148377
    39571 7wpr:F (4.39) BS01 CA ? N/A P04275 35148377
    39572 7wpr:F (4.39) BS02 CA ? N/A P04275 35148377
    39573 7wpr:G (4.39) BS01 CA ? N/A P04275 35148377
    39574 7wpr:G (4.39) BS02 CA ? N/A P04275 35148377
    39575 7wpr:H (4.39) BS01 CA ? N/A P04275 35148377
    39576 7wpr:H (4.39) BS02 CA ? N/A P04275 35148377
    39577 7wpr:I (4.39) BS01 CA ? N/A P04275 35148377
    39578 7wpr:I (4.39) BS02 CA ? N/A P04275 35148377
    39579 7wpr:J (4.39) BS01 CA ? N/A P04275 35148377
    39580 7wpr:J (4.39) BS02 CA ? N/A P04275 35148377
    39581 7wpr:K (4.39) BS01 CA ? N/A P04275 35148377
    39582 7wpr:K (4.39) BS02 CA ? N/A P04275 35148377
    39583 7wpr:L (4.39) BS01 CA ? N/A P04275 35148377
    39584 7wpr:L (4.39) BS02 CA ? N/A P04275 35148377
    39585 7wpr:M (4.39) BS01 CA ? N/A P04275 35148377
    39586 7wpr:M (4.39) BS02 CA ? N/A P04275 35148377
    39587 7wpr:N (4.39) BS01 CA ? N/A P04275 35148377
    39588 7wpr:N (4.39) BS02 CA ? N/A P04275 35148377
    39589 7wpr:O (4.39) BS01 CA ? N/A P04275 35148377
    39590 7wpr:O (4.39) BS02 CA ? N/A P04275 35148377
    39591 7wpr:P (4.39) BS01 CA ? N/A P04275 35148377
    39592 7wpr:P (4.39) BS02 CA ? N/A P04275 35148377
    39593 7wpr:Q (4.39) BS01 CA ? N/A P04275 35148377
    39594 7wpr:Q (4.39) BS02 CA ? N/A P04275 35148377
    39595 7wpr:R (4.39) BS01 CA ? N/A P04275 35148377
    39596 7wpr:R (4.39) BS02 CA ? N/A P04275 35148377
    39597 7wpr:S (4.39) BS01 CA ? N/A P04275 35148377
    39598 7wpr:T (4.39) BS01 CA ? N/A P04275 35148377
    39599 7wpr:U (4.39) BS01 CA ? N/A P04275 35148377
    39600 7wpr:V (4.39) BS01 CA ? N/A P04275 35148377
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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