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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39201 7v1v:E (1.96) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39202 7v1v:E (1.96) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39203 7v1v:F (1.96) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39204 7v1v:F (1.96) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39205 7v1w:A (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39206 7v1w:A (1.86) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39207 7v1w:B (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39208 7v1w:B (1.86) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39209 7v1w:C (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39210 7v1w:C (1.86) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39211 7v1w:D (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39212 7v1w:D (1.86) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39213 7v1w:E (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39214 7v1w:E (1.86) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39215 7v1w:F (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39216 7v1w:F (1.86) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39217 7v1x:A (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39218 7v1x:A (1.76) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39219 7v1x:B (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39220 7v1x:B (1.76) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39221 7v1x:C (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39222 7v1x:C (1.76) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39223 7v1x:D (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39224 7v1x:D (1.76) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39225 7v1x:E (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39226 7v1x:E (1.76) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39227 7v1x:F (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39228 7v1x:F (1.76) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    39229 7v3k:A (2.49) BS01 CA ? GO:0016042 ... A3TMR7 N/A
    39230 7v3k:B (2.49) BS01 CA ? GO:0016042 ... A3TMR7 N/A
    39231 7v3k:C (2.49) BS01 CA ? GO:0016042 ... A3TMR7 N/A
    39232 7v55:A (3.0) BS01 CA 3.1.4.4 GO:0003824 ... Q9HYC2 36216841
    39233 7v6d:A (2.5) BS01 CA ? GO:0046872 ... A0A5N5DNA6 34638680
    39234 7v6d:B (2.5) BS01 CA ? GO:0046872 ... A0A5N5DNA6 34638680
    39235 7v6p:A (2.9) BS01 CA ? N/A P49321 34819355
    39236 7vbo:A (1.5) BS01 CA 4.2.2.3 N/A A0A4Y5UXE1 36592931
    39237 7ve3:A (2.7) BS02 CA N/A GO:0004601 ... N/A 34761444
    39238 7vev:A (1.498) BS01 CA N/A N/A N/A 35879323
    39239 7vfs:A (2.8) BS05 CA ? GO:0001540 ... Q00975 34731621
    39240 7vfs:B (2.8) BS01 CA ? N/A P54289 34731621
    39241 7vfu:A (3.0) BS06 CA ? GO:0001540 ... Q00975 34731621
    39242 7vfu:B (3.0) BS01 CA ? N/A P54289 34731621
    39243 7vfv:A (3.0) BS06 CA ? GO:0001540 ... Q00975 34731621
    39244 7vfv:B (3.0) BS01 CA ? N/A P54289 34731621
    39245 7vfw:A (3.3) BS06 CA ? GO:0001540 ... Q00975 34731621
    39246 7vfw:B (3.3) BS01 CA ? N/A P54289 34731621
    39247 7vg2:A (3.1) BS03 CA 3.1.26.- GO:0003676 ... Q9LXW7 34648373
    39248 7vg2:A (3.1) BS04 CA 3.1.26.- GO:0003676 ... Q9LXW7 34648373
    39249 7vg3:A (3.73) BS03 CA 3.1.26.- GO:0003676 ... Q9LXW7 34648373
    39250 7vkx:A (1.56) BS02 CA ? GO:0004553 ... I0AIT9 35065074
    39251 7vky:B (2.0) BS03 CA ? GO:0004553 ... I0AIT9 35065074
    39252 7vky:B (2.0) BS04 CA ? GO:0004553 ... I0AIT9 35065074
    39253 7vkz:B (2.0) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39254 7vkz:B (2.0) BS02 CA ? GO:0004553 ... I0AIT9 35065074
    39255 7vl0:B (1.79) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39256 7vl1:B (1.6) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39257 7vl2:B (1.8) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39258 7vl3:B (1.82) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39259 7vl4:B (1.83) BS02 CA ? GO:0004553 ... I0AIT9 35065074
    39260 7vl5:B (1.93) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39261 7vl6:B (1.75) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39262 7vl7:B (1.89) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    39263 7vlc:B (2.2) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    39264 7vlc:F (2.2) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    39265 7vld:B (2.1) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    39266 7vld:F (2.1) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    39267 7vlf:B (2.4) BS02 CA ? GO:0001666 ... S0BBR6 35797404
    39268 7vlf:F (2.4) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    39269 7vlz:A (1.6) BS04 CA 3.4.24.3 GO:0004222 ... A0A8B3DGT3 N/A
    39270 7vlz:A (1.6) BS05 CA 3.4.24.3 GO:0004222 ... A0A8B3DGT3 N/A
    39271 7vlz:A (1.6) BS06 CA 3.4.24.3 GO:0004222 ... A0A8B3DGT3 N/A
    39272 7vmd:A (1.69) BS01 CA N/A GO:0016787 ... N/A 35935485
    39273 7vmd:A (1.69) BS02 CA N/A GO:0016787 ... N/A 35935485
    39274 7vme:A (1.78) BS01 CA N/A GO:0016787 ... N/A N/A
    39275 7vme:A (1.78) BS02 CA N/A GO:0016787 ... N/A N/A
    39276 7vmg:A (2.39) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    39277 7vmg:C (2.39) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    39278 7vmj:A (2.9) BS03 CA 3.6.5.- GO:0000226 ... P81947 N/A
    39279 7vmj:C (2.9) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    39280 7vmk:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    39281 7vmk:C (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    39282 7vmo:A (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    39283 7vmo:B (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    39284 7vmo:C (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    39285 7vmo:D (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    39286 7vmp:A (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    39287 7vmp:B (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    39288 7vmp:C (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    39289 7vmp:D (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    39290 7vmq:A (3.7) BS02 CA ? GO:0001666 ... E9Q401 N/A
    39291 7vmq:B (3.7) BS02 CA ? GO:0001666 ... E9Q401 N/A
    39292 7vmq:C (3.7) BS02 CA ? GO:0001666 ... E9Q401 N/A
    39293 7vmq:D (3.7) BS02 CA ? GO:0001666 ... E9Q401 N/A
    39294 7vms:A (3.8) BS02 CA ? GO:0001666 ... E9Q401 N/A
    39295 7vms:B (3.8) BS02 CA ? GO:0001666 ... E9Q401 N/A
    39296 7vms:C (3.8) BS02 CA ? GO:0001666 ... E9Q401 N/A
    39297 7vms:D (3.8) BS01 CA ? GO:0001666 ... E9Q401 N/A
    39298 7vn0:A (1.4) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39299 7vn0:B (1.4) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39300 7vn0:B (1.4) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39301 7vn0:B (1.4) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39302 7vn0:C (1.4) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39303 7vn0:D (1.4) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    39304 7vnj:A (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39305 7vnj:A (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39306 7vnj:A (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39307 7vnj:B (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39308 7vnj:B (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39309 7vnj:B (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39310 7vnj:C (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39311 7vnj:C (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39312 7vnj:C (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39313 7vnj:D (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39314 7vnj:D (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39315 7vnj:D (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39316 7vnj:E (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39317 7vnj:E (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39318 7vnj:E (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39319 7vnj:F (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39320 7vnj:F (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39321 7vnj:F (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39322 7vnj:G (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39323 7vnj:G (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39324 7vnj:G (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39325 7vnn:A (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39326 7vnn:A (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39327 7vnn:A (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39328 7vnn:B (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39329 7vnn:B (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39330 7vnn:B (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39331 7vnn:C (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39332 7vnn:C (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39333 7vnn:C (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39334 7vnn:D (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39335 7vnn:D (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39336 7vnn:D (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39337 7vnn:E (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39338 7vnn:E (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39339 7vnn:E (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39340 7vnn:F (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39341 7vnn:F (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39342 7vnn:F (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39343 7vnn:G (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    39344 7vnn:G (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    39345 7vnn:G (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    39346 7vo7:A (2.25) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35927030
    39347 7vo7:B (2.25) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35927030
    39348 7vpf:A (2.983) BS01 CA ? GO:0016853 ... A0A1R1C9D1 34784551
    39349 7vpf:B (2.983) BS02 CA ? GO:0016853 ... A0A1R1C9D1 34784551
    39350 7vrj:D (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    39351 7vrj:F (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    39352 7vrj:S (2.81) BS04 CA N/A GO:0016020 ... N/A 35460693
    39353 7vrj:U (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    39354 7vrj:W (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    39355 7vrj:Y (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    39356 7vu2:A (1.85) BS01 CA N/A GO:0016020 ... N/A N/A
    39357 7vu2:A (1.85) BS02 CA N/A GO:0016020 ... N/A N/A
    39358 7vu3:A (2.7) BS02 CA N/A GO:0016020 ... N/A N/A
    39359 7vuo:C (2.679) BS01 CA ? GO:0000086 ... P0DP23 N/A
    39360 7vuo:C (2.679) BS02 CA ? GO:0000086 ... P0DP23 N/A
    39361 7vur:A (1.7) BS01 CA ? GO:0005509 ... P0DP23 36198791
    39362 7vur:A (1.7) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39363 7vur:A (1.7) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39364 7vur:B (1.7) BS01 CA ? GO:0005509 ... P0DP23 36198791
    39365 7vur:B (1.7) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39366 7vus:A (1.7) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39367 7vus:A (1.7) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39368 7vus:B (1.7) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39369 7vus:B (1.7) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39370 7vus:B (1.7) BS04 CA ? GO:0005509 ... P0DP23 36198791
    39371 7vus:C (1.7) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39372 7vus:C (1.7) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39373 7vus:C (1.7) BS04 CA ? GO:0005509 ... P0DP23 36198791
    39374 7vus:D (1.7) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39375 7vus:D (1.7) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39376 7vus:D (1.7) BS04 CA ? GO:0005509 ... P0DP23 36198791
    39377 7vus:D (1.7) BS05 CA ? GO:0005509 ... P0DP23 36198791
    39378 7vut:A (1.7) BS01 CA ? GO:0005509 ... P0DP23 36198791
    39379 7vut:A (1.7) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39380 7vut:B (1.7) BS01 CA ? GO:0005509 ... P0DP23 36198791
    39381 7vut:B (1.7) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39382 7vut:B (1.7) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39383 7vuu:A (1.95) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39384 7vuu:A (1.95) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39385 7vuu:A (1.95) BS04 CA ? GO:0005509 ... P0DP23 36198791
    39386 7vuu:B (1.95) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39387 7vuu:B (1.95) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39388 7vuu:B (1.95) BS04 CA ? GO:0005509 ... P0DP23 36198791
    39389 7vuu:B (1.95) BS05 CA ? GO:0005509 ... P0DP23 36198791
    39390 7vuu:C (1.95) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39391 7vuu:C (1.95) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39392 7vuu:D (1.95) BS02 CA ? GO:0005509 ... P0DP23 36198791
    39393 7vuu:D (1.95) BS03 CA ? GO:0005509 ... P0DP23 36198791
    39394 7vuu:D (1.95) BS04 CA ? GO:0005509 ... P0DP23 36198791
    39395 7vuu:D (1.95) BS05 CA ? GO:0005509 ... P0DP23 36198791
    39396 7vuu:D (1.95) BS06 CA ? GO:0005509 ... P0DP23 36198791
    39397 7vvc:A (1.82) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 N/A
    39398 7vvc:B (1.82) BS01 CA 3.1.1.101
    3.1.1.74    		 GO:0005576 ... G9BY57 N/A
    39399 7vvd:C (3.134) BS01 CA ? GO:0000086 ... P0DP23 N/A
    39400 7vvd:C (3.134) BS02 CA ? GO:0000086 ... P0DP23 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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