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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38801 7uai:E (2.8) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38802 7ubr:A (2.04993) BS01 CA ? GO:0007155 ... P08514 36113427
    38803 7ubr:A (2.04993) BS02 CA ? GO:0007155 ... P08514 36113427
    38804 7ubr:A (2.04993) BS03 CA ? GO:0007155 ... P08514 36113427
    38805 7ubr:A (2.04993) BS04 CA ? GO:0007155 ... P08514 36113427
    38806 7ubr:C (2.04993) BS01 CA ? GO:0007155 ... P08514 36113427
    38807 7ubr:C (2.04993) BS02 CA ? GO:0007155 ... P08514 36113427
    38808 7ubr:C (2.04993) BS03 CA ? GO:0007155 ... P08514 36113427
    38809 7ubr:C (2.04993) BS04 CA ? GO:0007155 ... P08514 36113427
    38810 7ucy:A (2.34996) BS01 CA ? GO:0007155 ... P08514 36113427
    38811 7ucy:A (2.34996) BS02 CA ? GO:0007155 ... P08514 36113427
    38812 7ucy:A (2.34996) BS03 CA ? GO:0007155 ... P08514 36113427
    38813 7ucy:A (2.34996) BS04 CA ? GO:0007155 ... P08514 36113427
    38814 7ucy:C (2.34996) BS01 CA ? GO:0007155 ... P08514 36113427
    38815 7ucy:C (2.34996) BS02 CA ? GO:0007155 ... P08514 36113427
    38816 7ucy:C (2.34996) BS03 CA ? GO:0007155 ... P08514 36113427
    38817 7ucy:C (2.34996) BS04 CA ? GO:0007155 ... P08514 36113427
    38818 7udg:A (2.80007) BS01 CA ? GO:0007155 ... P08514 36113427
    38819 7udg:A (2.80007) BS02 CA ? GO:0007155 ... P08514 36113427
    38820 7udg:A (2.80007) BS03 CA ? GO:0007155 ... P08514 36113427
    38821 7udg:A (2.80007) BS04 CA ? GO:0007155 ... P08514 36113427
    38822 7udg:B (2.80007) BS02 CA ? N/A P05106 36113427
    38823 7udg:C (2.80007) BS01 CA ? GO:0007155 ... P08514 36113427
    38824 7udg:C (2.80007) BS02 CA ? GO:0007155 ... P08514 36113427
    38825 7udg:C (2.80007) BS03 CA ? GO:0007155 ... P08514 36113427
    38826 7udg:C (2.80007) BS04 CA ? GO:0007155 ... P08514 36113427
    38827 7udg:D (2.80007) BS02 CA ? N/A P05106 36113427
    38828 7udh:A (1.99999) BS01 CA ? GO:0007155 ... P08514 36113427
    38829 7udh:A (1.99999) BS02 CA ? GO:0007155 ... P08514 36113427
    38830 7udh:A (1.99999) BS03 CA ? GO:0007155 ... P08514 36113427
    38831 7udh:A (1.99999) BS04 CA ? GO:0007155 ... P08514 36113427
    38832 7udh:C (1.99999) BS01 CA ? GO:0007155 ... P08514 36113427
    38833 7udh:C (1.99999) BS02 CA ? GO:0007155 ... P08514 36113427
    38834 7udh:C (1.99999) BS03 CA ? GO:0007155 ... P08514 36113427
    38835 7udh:C (1.99999) BS04 CA ? GO:0007155 ... P08514 36113427
    38836 7ue0:A (2.74196) BS01 CA ? GO:0007155 ... P08514 36113427
    38837 7ue0:A (2.74196) BS02 CA ? GO:0007155 ... P08514 36113427
    38838 7ue0:A (2.74196) BS03 CA ? GO:0007155 ... P08514 36113427
    38839 7ue0:A (2.74196) BS04 CA ? GO:0007155 ... P08514 36113427
    38840 7ue0:B (2.74196) BS02 CA ? N/A P05106 36113427
    38841 7ue0:B (2.74196) BS03 CA ? N/A P05106 36113427
    38842 7ue0:C (2.74196) BS01 CA ? GO:0007155 ... P08514 36113427
    38843 7ue0:C (2.74196) BS02 CA ? GO:0007155 ... P08514 36113427
    38844 7ue0:C (2.74196) BS03 CA ? GO:0007155 ... P08514 36113427
    38845 7ue0:C (2.74196) BS04 CA ? GO:0007155 ... P08514 36113427
    38846 7ue0:D (2.74196) BS02 CA ? N/A P05106 36113427
    38847 7ue0:D (2.74196) BS03 CA ? N/A P05106 36113427
    38848 7uea:A (3.49) BS16 CA ? GO:0009579 ... Q8KAY0 36192412
    38849 7uea:a (3.49) BS23 CA ? GO:0009579 ... Q8KAY0 36192412
    38850 7ueb:A (3.08) BS18 CA ? GO:0009579 ... Q8KAY0 36192412
    38851 7ueb:a (3.08) BS22 CA ? GO:0009579 ... Q8KAY0 36192412
    38852 7ufh:A (2.99768) BS01 CA ? GO:0007155 ... P08514 36113427
    38853 7ufh:A (2.99768) BS02 CA ? GO:0007155 ... P08514 36113427
    38854 7ufh:A (2.99768) BS03 CA ? GO:0007155 ... P08514 36113427
    38855 7ufh:A (2.99768) BS04 CA ? GO:0007155 ... P08514 36113427
    38856 7ufh:C (2.99768) BS01 CA ? GO:0007155 ... P08514 36113427
    38857 7ufh:C (2.99768) BS02 CA ? GO:0007155 ... P08514 36113427
    38858 7ufh:C (2.99768) BS03 CA ? GO:0007155 ... P08514 36113427
    38859 7ufh:C (2.99768) BS04 CA ? GO:0007155 ... P08514 36113427
    38860 7ug8:A (1.796) BS02 CA ? GO:0015849 ... Q0I6F8 N/A
    38861 7ug8:B (1.796) BS02 CA ? GO:0015849 ... Q0I6F8 N/A
    38862 7uh8:A (2.75002) BS01 CA ? GO:0007155 ... P08514 36113427
    38863 7uh8:A (2.75002) BS02 CA ? GO:0007155 ... P08514 36113427
    38864 7uh8:A (2.75002) BS03 CA ? GO:0007155 ... P08514 36113427
    38865 7uh8:A (2.75002) BS04 CA ? GO:0007155 ... P08514 36113427
    38866 7uh8:C (2.75002) BS01 CA ? GO:0007155 ... P08514 36113427
    38867 7uh8:C (2.75002) BS02 CA ? GO:0007155 ... P08514 36113427
    38868 7uh8:C (2.75002) BS03 CA ? GO:0007155 ... P08514 36113427
    38869 7uh8:C (2.75002) BS04 CA ? GO:0007155 ... P08514 36113427
    38870 7uh9:A (-1.00) BS01 CA ? GO:0005509 ... P19429
    P63316    		 35649123
    38871 7uha:A (-1.00) BS01 CA ? GO:0005509 ... P19429
    P63316    		 35649123
    38872 7uhf:A (3.1) BS02 CA ? GO:0005216 ... Q01668 35477996
    38873 7uhf:D (3.1) BS01 CA ? N/A P54289 35477996
    38874 7uhg:A (3.0) BS01 CA ? GO:0005216 ... Q01668 35477996
    38875 7uhg:D (3.0) BS01 CA ? N/A P54289 35477996
    38876 7ui5:A (-1.00) BS01 CA ? GO:0002523 ... P06702 36194634
    38877 7ui5:A (-1.00) BS02 CA ? GO:0002523 ... P06702 36194634
    38878 7ui5:B (-1.00) BS01 CA ? GO:0002523 ... P06702 36194634
    38879 7ui5:B (-1.00) BS02 CA ? GO:0002523 ... P06702 36194634
    38880 7uii:a (2.6) BS01 CA N/A N/A N/A N/A
    38881 7uje:A (2.49997) BS01 CA ? GO:0007155 ... P08514 36113427
    38882 7uje:A (2.49997) BS02 CA ? GO:0007155 ... P08514 36113427
    38883 7uje:A (2.49997) BS03 CA ? GO:0007155 ... P08514 36113427
    38884 7uje:A (2.49997) BS04 CA ? GO:0007155 ... P08514 36113427
    38885 7uje:C (2.49997) BS01 CA ? GO:0007155 ... P08514 36113427
    38886 7uje:C (2.49997) BS02 CA ? GO:0007155 ... P08514 36113427
    38887 7uje:C (2.49997) BS03 CA ? GO:0007155 ... P08514 36113427
    38888 7uje:C (2.49997) BS04 CA ? GO:0007155 ... P08514 36113427
    38889 7ujk:A (2.43266) BS01 CA ? GO:0007155 ... P08514 36113427
    38890 7ujk:A (2.43266) BS02 CA ? GO:0007155 ... P08514 36113427
    38891 7ujk:A (2.43266) BS03 CA ? GO:0007155 ... P08514 36113427
    38892 7ujk:A (2.43266) BS04 CA ? GO:0007155 ... P08514 36113427
    38893 7ujk:B (2.43266) BS02 CA ? N/A P05106 36113427
    38894 7ujk:B (2.43266) BS03 CA ? N/A P05106 36113427
    38895 7ujk:C (2.43266) BS01 CA ? GO:0007155 ... P08514 36113427
    38896 7ujk:C (2.43266) BS02 CA ? GO:0007155 ... P08514 36113427
    38897 7ujk:C (2.43266) BS03 CA ? GO:0007155 ... P08514 36113427
    38898 7ujk:C (2.43266) BS04 CA ? GO:0007155 ... P08514 36113427
    38899 7ujk:D (2.43266) BS02 CA ? N/A P05106 36113427
    38900 7ujk:D (2.43266) BS03 CA ? N/A P05106 36113427
    38901 7uk9:A (2.60002) BS01 CA ? GO:0007155 ... P08514 36113427
    38902 7uk9:A (2.60002) BS02 CA ? GO:0007155 ... P08514 36113427
    38903 7uk9:A (2.60002) BS03 CA ? GO:0007155 ... P08514 36113427
    38904 7uk9:A (2.60002) BS04 CA ? GO:0007155 ... P08514 36113427
    38905 7uk9:C (2.60002) BS01 CA ? GO:0007155 ... P08514 36113427
    38906 7uk9:C (2.60002) BS02 CA ? GO:0007155 ... P08514 36113427
    38907 7uk9:C (2.60002) BS03 CA ? GO:0007155 ... P08514 36113427
    38908 7uk9:C (2.60002) BS04 CA ? GO:0007155 ... P08514 36113427
    38909 7ukh:I (2.33) BS01 CA ? GO:0001508 ... Q9NS61 35597238
    38910 7ukh:I (2.33) BS02 CA ? GO:0001508 ... Q9NS61 35597238
    38911 7ukh:I (2.33) BS03 CA ? GO:0001508 ... Q9NS61 35597238
    38912 7ukh:J (2.33) BS01 CA ? GO:0001508 ... Q9NS61 35597238
    38913 7ukh:J (2.33) BS02 CA ? GO:0001508 ... Q9NS61 35597238
    38914 7ukh:J (2.33) BS03 CA ? GO:0001508 ... Q9NS61 35597238
    38915 7ukh:K (2.33) BS01 CA ? GO:0001508 ... Q9NS61 35597238
    38916 7ukh:K (2.33) BS02 CA ? GO:0001508 ... Q9NS61 35597238
    38917 7ukh:K (2.33) BS03 CA ? GO:0001508 ... Q9NS61 35597238
    38918 7ukh:L (2.33) BS01 CA ? GO:0001508 ... Q9NS61 35597238
    38919 7ukh:L (2.33) BS02 CA ? GO:0001508 ... Q9NS61 35597238
    38920 7ukh:L (2.33) BS03 CA ? GO:0001508 ... Q9NS61 35597238
    38921 7uko:A (2.604) BS01 CA ? GO:0007155 ... P08514 36113427
    38922 7uko:A (2.604) BS02 CA ? GO:0007155 ... P08514 36113427
    38923 7uko:A (2.604) BS03 CA ? GO:0007155 ... P08514 36113427
    38924 7uko:A (2.604) BS04 CA ? GO:0007155 ... P08514 36113427
    38925 7uko:C (2.604) BS01 CA ? GO:0007155 ... P08514 36113427
    38926 7uko:C (2.604) BS02 CA ? GO:0007155 ... P08514 36113427
    38927 7uko:C (2.604) BS03 CA ? GO:0007155 ... P08514 36113427
    38928 7uko:C (2.604) BS04 CA ? GO:0007155 ... P08514 36113427
    38929 7ukp:A (2.80113) BS01 CA ? GO:0007155 ... P08514 36113427
    38930 7ukp:A (2.80113) BS02 CA ? GO:0007155 ... P08514 36113427
    38931 7ukp:A (2.80113) BS03 CA ? GO:0007155 ... P08514 36113427
    38932 7ukp:A (2.80113) BS04 CA ? GO:0007155 ... P08514 36113427
    38933 7ukp:C (2.80113) BS01 CA ? GO:0007155 ... P08514 36113427
    38934 7ukp:C (2.80113) BS02 CA ? GO:0007155 ... P08514 36113427
    38935 7ukp:C (2.80113) BS03 CA ? GO:0007155 ... P08514 36113427
    38936 7ukp:C (2.80113) BS04 CA ? GO:0007155 ... P08514 36113427
    38937 7ukt:A (2.36994) BS01 CA ? GO:0007155 ... P08514 36113427
    38938 7ukt:A (2.36994) BS02 CA ? GO:0007155 ... P08514 36113427
    38939 7ukt:A (2.36994) BS03 CA ? GO:0007155 ... P08514 36113427
    38940 7ukt:A (2.36994) BS04 CA ? GO:0007155 ... P08514 36113427
    38941 7ukt:C (2.36994) BS01 CA ? GO:0007155 ... P08514 36113427
    38942 7ukt:C (2.36994) BS02 CA ? GO:0007155 ... P08514 36113427
    38943 7ukt:C (2.36994) BS03 CA ? GO:0007155 ... P08514 36113427
    38944 7ukt:C (2.36994) BS04 CA ? GO:0007155 ... P08514 36113427
    38945 7umh:L (2.6) BS09 CA ? GO:0005886 ... P37277 37532717
    38946 7umh:U (2.6) BS09 CA ? GO:0005886 ... P37277 37532717
    38947 7umh:U (2.6) BS11 CA ? GO:0005886 ... P37277 37532717
    38948 7umh:l (2.6) BS03 CA ? GO:0005886 ... P37277 37532717
    38949 7ums:a (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38950 7ums:a (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38951 7ums:a (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38952 7ums:a (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38953 7ums:b (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38954 7ums:b (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38955 7ums:b (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38956 7ums:b (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38957 7ums:c (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38958 7ums:c (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38959 7ums:c (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38960 7ums:c (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38961 7ums:d (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38962 7ums:d (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38963 7ums:d (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38964 7ums:d (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38965 7ums:e (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38966 7ums:e (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38967 7ums:e (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38968 7ums:e (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38969 7ums:f (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38970 7ums:f (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38971 7ums:f (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38972 7ums:f (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38973 7ums:g (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38974 7ums:g (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38975 7ums:g (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38976 7ums:g (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38977 7ums:h (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38978 7ums:h (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38979 7ums:h (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38980 7ums:h (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38981 7ums:i (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38982 7ums:i (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38983 7ums:i (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38984 7ums:i (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38985 7ums:j (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38986 7ums:j (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38987 7ums:j (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38988 7ums:j (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38989 7ums:k (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38990 7ums:k (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38991 7ums:k (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38992 7ums:k (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38993 7ums:l (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38994 7ums:l (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38995 7ums:l (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    38996 7ums:l (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    38997 7ums:m (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    38998 7ums:m (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    38999 7ums:m (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    39000 7ums:m (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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