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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38601 7td8:C (2.6) BS03 CA ? GO:0007155 ... P08514 36113427
    38602 7td8:C (2.6) BS04 CA ? GO:0007155 ... P08514 36113427
    38603 7td8:D (2.6) BS02 CA ? N/A P05106 36113427
    38604 7td8:D (2.6) BS03 CA ? N/A P05106 36113427
    38605 7tdg:A (3.8) BS02 CA ? GO:0003151 ... P11716 35257661
    38606 7tdg:B (3.8) BS02 CA ? GO:0003151 ... P11716 35257661
    38607 7tdg:C (3.8) BS02 CA ? GO:0003151 ... P11716 35257661
    38608 7tdg:D (3.8) BS02 CA ? GO:0003151 ... P11716 35257661
    38609 7tdh:A (4.0) BS02 CA ? GO:0003151 ... P11716 35257661
    38610 7tdh:B (4.0) BS02 CA ? GO:0003151 ... P11716 35257661
    38611 7tdh:C (4.0) BS02 CA ? GO:0003151 ... P11716 35257661
    38612 7tdh:D (4.0) BS02 CA ? GO:0003151 ... P11716 35257661
    38613 7tdi:A (3.3) BS02 CA ? GO:0003151 ... P11716 35257661
    38614 7tdi:B (3.3) BS03 CA ? GO:0003151 ... P11716 35257661
    38615 7tdi:C (3.3) BS03 CA ? GO:0003151 ... P11716 35257661
    38616 7tdi:D (3.3) BS03 CA ? GO:0003151 ... P11716 35257661
    38617 7tdj:A (3.7) BS03 CA ? GO:0003151 ... P11716 35257661
    38618 7tdj:B (3.7) BS03 CA ? GO:0003151 ... P11716 35257661
    38619 7tdj:C (3.7) BS03 CA ? GO:0003151 ... P11716 35257661
    38620 7tdj:D (3.7) BS03 CA ? GO:0003151 ... P11716 35257661
    38621 7tdk:A (3.8) BS03 CA ? GO:0003151 ... P11716 35257661
    38622 7tdk:B (3.8) BS03 CA ? GO:0003151 ... P11716 35257661
    38623 7tdk:C (3.8) BS03 CA ? GO:0003151 ... P11716 35257661
    38624 7tdk:D (3.8) BS03 CA ? GO:0003151 ... P11716 35257661
    38625 7tea:C (2.35) BS03 CA ? GO:0003677 ... Q2FYY7 35778410
    38626 7tho:A (2.75) BS02 CA ? GO:0007155 ... P08514 36113427
    38627 7tho:A (2.75) BS03 CA ? GO:0007155 ... P08514 36113427
    38628 7tho:A (2.75) BS04 CA ? GO:0007155 ... P08514 36113427
    38629 7tho:A (2.75) BS05 CA ? GO:0007155 ... P08514 36113427
    38630 7tho:B (2.75) BS03 CA ? N/A P05106 36113427
    38631 7tho:B (2.75) BS04 CA ? N/A P05106 36113427
    38632 7tho:C (2.75) BS02 CA ? GO:0007155 ... P08514 36113427
    38633 7tho:C (2.75) BS03 CA ? GO:0007155 ... P08514 36113427
    38634 7tho:C (2.75) BS04 CA ? GO:0007155 ... P08514 36113427
    38635 7tho:C (2.75) BS05 CA ? GO:0007155 ... P08514 36113427
    38636 7tho:D (2.75) BS04 CA ? N/A P05106 36113427
    38637 7tho:D (2.75) BS05 CA ? N/A P05106 36113427
    38638 7thw:A (2.2) BS01 CA ? N/A A0A454Y5W9 N/A
    38639 7thw:B (2.2) BS01 CA ? N/A A0A454Y5W9 N/A
    38640 7thw:C (2.2) BS01 CA ? N/A A0A454Y5W9 N/A
    38641 7thw:D (2.2) BS01 CA ? N/A A0A454Y5W9 N/A
    38642 7ti7:A (1.5) BS02 CA 6.3.2.9 GO:0005524 ... B7H1N2 N/A
    38643 7tin:A (2.35) BS03 CA 2.2.1.9 GO:0000287 ... Q2FZL7 36633276
    38644 7tin:B (2.35) BS03 CA 2.2.1.9 GO:0000287 ... Q2FZL7 36633276
    38645 7tin:C (2.35) BS03 CA 2.2.1.9 GO:0000287 ... Q2FZL7 36633276
    38646 7tin:D (2.35) BS02 CA 2.2.1.9 GO:0000287 ... Q2FZL7 36633276
    38647 7tli:A (1.95) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    38648 7tli:A (1.95) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    38649 7tli:A (1.95) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    38650 7tli:A (1.95) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    38651 7tln:A (2.3) BS01 CA 3.4.24.27 GO:0004222 ... P00800 6830761
    38652 7tln:A (2.3) BS02 CA 3.4.24.27 GO:0004222 ... P00800 6830761
    38653 7tln:A (2.3) BS03 CA 3.4.24.27 GO:0004222 ... P00800 6830761
    38654 7tln:A (2.3) BS04 CA 3.4.24.27 GO:0004222 ... P00800 6830761
    38655 7tmz:A (2.20002) BS01 CA ? GO:0007155 ... P08514 36113427
    38656 7tmz:A (2.20002) BS02 CA ? GO:0007155 ... P08514 36113427
    38657 7tmz:A (2.20002) BS03 CA ? GO:0007155 ... P08514 36113427
    38658 7tmz:A (2.20002) BS04 CA ? GO:0007155 ... P08514 36113427
    38659 7tmz:B (2.20002) BS02 CA ? N/A P05106 36113427
    38660 7tmz:B (2.20002) BS03 CA ? N/A P05106 36113427
    38661 7tmz:C (2.20002) BS01 CA ? GO:0007155 ... P08514 36113427
    38662 7tmz:C (2.20002) BS02 CA ? GO:0007155 ... P08514 36113427
    38663 7tmz:C (2.20002) BS03 CA ? GO:0007155 ... P08514 36113427
    38664 7tmz:C (2.20002) BS04 CA ? GO:0007155 ... P08514 36113427
    38665 7tmz:D (2.20002) BS02 CA ? N/A P05106 36113427
    38666 7tmz:D (2.20002) BS03 CA ? N/A P05106 36113427
    38667 7tow:A (2.15) BS02 CA N/A N/A N/A 35447081
    38668 7tow:B (2.15) BS02 CA N/A N/A N/A 35447081
    38669 7tow:H (2.15) BS02 CA N/A N/A N/A 35447081
    38670 7tow:H (2.15) BS03 CA N/A N/A N/A 35447081
    38671 7tow:L (2.15) BS02 CA N/A N/A N/A 35447081
    38672 7tpd:A (2.6) BS01 CA ? GO:0007155 ... P08514 36113427
    38673 7tpd:A (2.6) BS02 CA ? GO:0007155 ... P08514 36113427
    38674 7tpd:A (2.6) BS03 CA ? GO:0007155 ... P08514 36113427
    38675 7tpd:A (2.6) BS04 CA ? GO:0007155 ... P08514 36113427
    38676 7tpd:B (2.6) BS02 CA ? N/A P05106 36113427
    38677 7tpd:B (2.6) BS03 CA ? N/A P05106 36113427
    38678 7tpd:C (2.6) BS01 CA ? GO:0007155 ... P08514 36113427
    38679 7tpd:C (2.6) BS02 CA ? GO:0007155 ... P08514 36113427
    38680 7tpd:C (2.6) BS03 CA ? GO:0007155 ... P08514 36113427
    38681 7tpd:C (2.6) BS04 CA ? GO:0007155 ... P08514 36113427
    38682 7tpd:D (2.6) BS02 CA ? N/A P05106 36113427
    38683 7tpd:D (2.6) BS03 CA ? N/A P05106 36113427
    38684 7tx9:A (1.34) BS01 CA ? GO:0016020 ... J3KQA0 N/A
    38685 7tx9:A (1.34) BS02 CA ? GO:0016020 ... J3KQA0 N/A
    38686 7txr:A (2.0) BS01 CA N/A N/A N/A N/A
    38687 7txr:B (2.0) BS01 CA N/A N/A N/A N/A
    38688 7tz2:A (2.55) BS01 CA ? GO:0007596 ... Q08830 35761082
    38689 7tzc:A (2.45) BS02 CA ? GO:0003151 ... P11716 35580609
    38690 7tzc:B (2.45) BS02 CA ? GO:0003151 ... P11716 35580609
    38691 7tzc:C (2.45) BS01 CA ? GO:0000086 ... P0DP23 35580609
    38692 7tzc:C (2.45) BS02 CA ? GO:0000086 ... P0DP23 35580609
    38693 7tzc:C (2.45) BS03 CA ? GO:0000086 ... P0DP23 35580609
    38694 7tzc:C (2.45) BS04 CA ? GO:0000086 ... P0DP23 35580609
    38695 7tzc:D (2.45) BS01 CA ? GO:0000086 ... P0DP23 35580609
    38696 7tzc:D (2.45) BS02 CA ? GO:0000086 ... P0DP23 35580609
    38697 7tzc:D (2.45) BS03 CA ? GO:0000086 ... P0DP23 35580609
    38698 7tzc:D (2.45) BS04 CA ? GO:0000086 ... P0DP23 35580609
    38699 7tzc:E (2.45) BS01 CA ? GO:0000086 ... P0DP23 35580609
    38700 7tzc:E (2.45) BS02 CA ? GO:0000086 ... P0DP23 35580609
    38701 7tzc:E (2.45) BS03 CA ? GO:0000086 ... P0DP23 35580609
    38702 7tzc:E (2.45) BS04 CA ? GO:0000086 ... P0DP23 35580609
    38703 7tzc:G (2.45) BS03 CA ? GO:0003151 ... P11716 35580609
    38704 7tzc:I (2.45) BS03 CA ? GO:0003151 ... P11716 35580609
    38705 7tzc:K (2.45) BS01 CA ? GO:0000086 ... P0DP23 35580609
    38706 7tzc:K (2.45) BS02 CA ? GO:0000086 ... P0DP23 35580609
    38707 7tzc:K (2.45) BS03 CA ? GO:0000086 ... P0DP23 35580609
    38708 7tzc:K (2.45) BS04 CA ? GO:0000086 ... P0DP23 35580609
    38709 7u0t:A (2.45) BS01 CA 3.1.3.16 GO:0001569 ... P48454
    P63098    		 35604094
    38710 7u0t:A (2.45) BS02 CA 3.1.3.16 GO:0001569 ... P48454
    P63098    		 35604094
    38711 7u0t:A (2.45) BS03 CA 3.1.3.16 GO:0001569 ... P48454
    P63098    		 35604094
    38712 7u0t:A (2.45) BS04 CA 3.1.3.16 GO:0001569 ... P48454
    P63098    		 35604094
    38713 7u0u:A (1.9) BS01 CA 3.1.3.16 GO:0005509 ... Q4WUR1 35604094
    38714 7u0u:A (1.9) BS02 CA 3.1.3.16 GO:0005509 ... Q4WUR1 35604094
    38715 7u0u:A (1.9) BS03 CA 3.1.3.16 GO:0005509 ... Q4WUR1 35604094
    38716 7u0u:A (1.9) BS04 CA 3.1.3.16 GO:0005509 ... Q4WUR1 35604094
    38717 7u32:A (3.46) BS05 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.4
    3.4.23.-
    3.6.1.23    		 GO:0003676 ... P35956 35504909
    38718 7u32:I (3.46) BS05 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.4
    3.4.23.-
    3.6.1.23    		 GO:0003676 ... P35956 35504909
    38719 7u4e:A (1.54) BS04 CA 3.2.1.18 GO:0004308 ... H9XI12 36307418
    38720 7u4e:B (1.54) BS04 CA 3.2.1.18 GO:0004308 ... H9XI12 36307418
    38721 7u4e:C (1.54) BS04 CA 3.2.1.18 GO:0004308 ... H9XI12 36307418
    38722 7u4e:D (1.54) BS04 CA 3.2.1.18 GO:0004308 ... H9XI12 36307418
    38723 7u4f:A (1.4) BS01 CA 3.2.1.18 GO:0004308 ... Q8AZ87 36307418
    38724 7u4g:A (1.65) BS02 CA 3.2.1.18 GO:0004308 ... B8K0N8 36307418
    38725 7u4q:A (1.56) BS01 CA ? GO:0016020 ... P21579 N/A
    38726 7u4q:A (1.56) BS02 CA ? GO:0016020 ... P21579 N/A
    38727 7u4q:A (1.56) BS03 CA ? GO:0016020 ... P21579 N/A
    38728 7u60:A (2.55) BS02 CA ? GO:0007155 ... P08514 36113427
    38729 7u60:A (2.55) BS03 CA ? GO:0007155 ... P08514 36113427
    38730 7u60:A (2.55) BS04 CA ? GO:0007155 ... P08514 36113427
    38731 7u60:A (2.55) BS05 CA ? GO:0007155 ... P08514 36113427
    38732 7u60:C (2.55) BS02 CA ? GO:0007155 ... P08514 36113427
    38733 7u60:C (2.55) BS03 CA ? GO:0007155 ... P08514 36113427
    38734 7u60:C (2.55) BS04 CA ? GO:0007155 ... P08514 36113427
    38735 7u60:C (2.55) BS05 CA ? GO:0007155 ... P08514 36113427
    38736 7u71:AAA (1.975) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    38737 7u71:AAA (1.975) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    38738 7u71:AAA (1.975) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    38739 7u71:AAA (1.975) BS04 CA ? GO:0005509 ... Q99PF4 N/A
    38740 7u71:AAA (1.975) BS05 CA ? GO:0005509 ... Q99PF4 N/A
    38741 7u71:AAA (1.975) BS06 CA ? GO:0005509 ... Q99PF4 N/A
    38742 7u72:A (1.53) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    38743 7u77:A (1.58) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    38744 7u78:A (1.61) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    38745 7u7d:A (1.57) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    38746 7u7r:A (1.64) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    38747 7u9f:A (2.70001) BS01 CA ? GO:0007155 ... P08514 36113427
    38748 7u9f:A (2.70001) BS02 CA ? GO:0007155 ... P08514 36113427
    38749 7u9f:A (2.70001) BS03 CA ? GO:0007155 ... P08514 36113427
    38750 7u9f:A (2.70001) BS04 CA ? GO:0007155 ... P08514 36113427
    38751 7u9f:C (2.70001) BS01 CA ? GO:0007155 ... P08514 36113427
    38752 7u9f:C (2.70001) BS02 CA ? GO:0007155 ... P08514 36113427
    38753 7u9f:C (2.70001) BS03 CA ? GO:0007155 ... P08514 36113427
    38754 7u9f:C (2.70001) BS04 CA ? GO:0007155 ... P08514 36113427
    38755 7u9v:A (2.25492) BS01 CA ? GO:0007155 ... P08514 36113427
    38756 7u9v:A (2.25492) BS02 CA ? GO:0007155 ... P08514 36113427
    38757 7u9v:A (2.25492) BS03 CA ? GO:0007155 ... P08514 36113427
    38758 7u9v:A (2.25492) BS04 CA ? GO:0007155 ... P08514 36113427
    38759 7u9v:C (2.25492) BS01 CA ? GO:0007155 ... P08514 36113427
    38760 7u9v:C (2.25492) BS02 CA ? GO:0007155 ... P08514 36113427
    38761 7u9v:C (2.25492) BS03 CA ? GO:0007155 ... P08514 36113427
    38762 7u9v:C (2.25492) BS04 CA ? GO:0007155 ... P08514 36113427
    38763 7u9z:A (3.29) BS03 CA ? GO:0001666 ... Q92736 35857850
    38764 7u9z:B (3.29) BS03 CA ? GO:0001666 ... Q92736 35857850
    38765 7u9z:C (3.29) BS03 CA ? GO:0001666 ... Q92736 35857850
    38766 7u9z:D (3.29) BS03 CA ? GO:0001666 ... Q92736 35857850
    38767 7ua4:A (2.93) BS03 CA ? GO:0001666 ... Q92736 35857850
    38768 7ua4:B (2.93) BS03 CA ? GO:0001666 ... Q92736 35857850
    38769 7ua4:C (2.93) BS03 CA ? GO:0001666 ... Q92736 35857850
    38770 7ua4:D (2.93) BS03 CA ? GO:0001666 ... Q92736 35857850
    38771 7ua9:A (3.59) BS03 CA ? GO:0001666 ... Q92736 35857850
    38772 7ua9:B (3.59) BS03 CA ? GO:0001666 ... Q92736 35857850
    38773 7ua9:C (3.59) BS03 CA ? GO:0001666 ... Q92736 35857850
    38774 7ua9:D (3.59) BS03 CA ? GO:0001666 ... Q92736 35857850
    38775 7uab:A (3.7) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38776 7uab:A (3.7) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38777 7uab:D (3.7) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38778 7uab:E (3.7) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38779 7uab:E (3.7) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38780 7uab:H (3.7) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38781 7uab:H (3.7) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38782 7uac:H (2.7) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38783 7uac:H (2.7) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38784 7uae:A (2.6) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38785 7uae:A (2.6) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38786 7uaf:A (2.4) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38787 7uaf:A (2.4) BS05 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38788 7uaf:B (2.4) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38789 7uaf:B (2.4) BS05 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38790 7uaf:C (2.4) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38791 7uaf:C (2.4) BS05 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38792 7uaf:D (2.4) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38793 7uaf:D (2.4) BS05 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38794 7uai:B (2.8) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38795 7uai:B (2.8) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38796 7uai:C (2.8) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38797 7uai:C (2.8) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38798 7uai:D (2.8) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38799 7uai:D (2.8) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    38800 7uai:E (2.8) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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