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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38401 7ss5:A (2.7) BS03 CA ? GO:0042802 ... Q9F6L0 35202658
    38402 7ss5:A (2.7) BS04 CA ? GO:0042802 ... Q9F6L0 35202658
    38403 7ss5:A (2.7) BS05 CA ? GO:0042802 ... Q9F6L0 35202658
    38404 7ss5:B (2.7) BS03 CA ? GO:0042802 ... Q9F6L0 35202658
    38405 7ss5:B (2.7) BS04 CA ? GO:0042802 ... Q9F6L0 35202658
    38406 7ss5:B (2.7) BS05 CA ? GO:0042802 ... Q9F6L0 35202658
    38407 7st4:A (2.0) BS01 CA N/A GO:0005509 ... N/A N/A
    38408 7st4:A (2.0) BS02 CA N/A GO:0005509 ... N/A N/A
    38409 7st4:A (2.0) BS03 CA N/A GO:0005509 ... N/A N/A
    38410 7st4:A (2.0) BS04 CA N/A GO:0005509 ... N/A N/A
    38411 7std:A (1.8) BS01 CA 4.2.1.94 GO:0005575 ... P56221 10382670
    38412 7std:C (1.8) BS01 CA 4.2.1.94 GO:0005575 ... P56221 10382670
    38413 7stt:A (1.603) BS01 CA ? GO:0004065 ... A0A2T3HKC0 35011319
    38414 7stu:A (2.23) BS01 CA ? GO:0004065 ... A0A2T3HKC0 35011319
    38415 7stv:A (2.35) BS01 CA ? GO:0004065 ... A0A2T3HKC0 35011319
    38416 7stz:C (2.95) BS05 CA ? GO:0005509 ... P12830 36157596
    38417 7stz:C (2.95) BS06 CA ? GO:0005509 ... P12830 36157596
    38418 7stz:C (2.95) BS07 CA ? GO:0005509 ... P12830 36157596
    38419 7stz:C (2.95) BS08 CA ? GO:0005509 ... P12830 36157596
    38420 7stz:C (2.95) BS09 CA ? GO:0005509 ... P12830 36157596
    38421 7stz:C (2.95) BS10 CA ? GO:0005509 ... P12830 36157596
    38422 7stz:C (2.95) BS11 CA ? GO:0005509 ... P12830 36157596
    38423 7stz:C (2.95) BS12 CA ? GO:0005509 ... P12830 36157596
    38424 7stz:C (2.95) BS13 CA ? GO:0005509 ... P12830 36157596
    38425 7stz:C (2.95) BS14 CA ? GO:0005509 ... P12830 36157596
    38426 7stz:C (2.95) BS15 CA ? GO:0005509 ... P12830 36157596
    38427 7stz:C (2.95) BS16 CA ? GO:0005509 ... P12830 36157596
    38428 7stz:D (2.95) BS05 CA ? GO:0005509 ... P12830 36157596
    38429 7stz:D (2.95) BS06 CA ? GO:0005509 ... P12830 36157596
    38430 7stz:D (2.95) BS07 CA ? GO:0005509 ... P12830 36157596
    38431 7stz:D (2.95) BS08 CA ? GO:0005509 ... P12830 36157596
    38432 7stz:D (2.95) BS09 CA ? GO:0005509 ... P12830 36157596
    38433 7stz:D (2.95) BS10 CA ? GO:0005509 ... P12830 36157596
    38434 7stz:D (2.95) BS11 CA ? GO:0005509 ... P12830 36157596
    38435 7stz:D (2.95) BS12 CA ? GO:0005509 ... P12830 36157596
    38436 7stz:D (2.95) BS13 CA ? GO:0005509 ... P12830 36157596
    38437 7stz:D (2.95) BS14 CA ? GO:0005509 ... P12830 36157596
    38438 7stz:D (2.95) BS15 CA ? GO:0005509 ... P12830 36157596
    38439 7sup:A (-1.00) BS02 CA ? GO:0005509 ... P19429
    P63316    		 35349258
    38440 7suu:A (2.248) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    38441 7suu:A (2.248) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    38442 7suu:A (2.248) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    38443 7suu:A (2.248) BS04 CA ? GO:0005509 ... Q99PF4 N/A
    38444 7suu:A (2.248) BS05 CA ? GO:0005509 ... Q99PF4 N/A
    38445 7suu:A (2.248) BS06 CA ? GO:0005509 ... Q99PF4 N/A
    38446 7suu:B (2.248) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    38447 7suu:B (2.248) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    38448 7suu:B (2.248) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    38449 7suu:B (2.248) BS04 CA ? GO:0005509 ... Q99PF4 N/A
    38450 7suu:B (2.248) BS05 CA ? GO:0005509 ... Q99PF4 N/A
    38451 7suu:B (2.248) BS06 CA ? GO:0005509 ... Q99PF4 N/A
    38452 7suu:B (2.248) BS07 CA ? GO:0005509 ... Q99PF4 N/A
    38453 7svc:A (-1.00) BS02 CA ? GO:0005509 ... P19429
    P63316    		 35349258
    38454 7svj:B (1.43) BS01 CA ? GO:0016787 ... A0A0R1U3N2 36914755
    38455 7sxc:A (-1.00) BS01 CA ? GO:0005509 ... P19429
    P63316    		 35349258
    38456 7sxf:A (1.94) BS03 CA 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49840 36812145
    38457 7sz8:A (2.337) BS01 CA ? GO:0005509 ... Q9NYQ6 N/A
    38458 7sz8:A (2.337) BS02 CA ? GO:0005509 ... Q9NYQ6 N/A
    38459 7sz8:A (2.337) BS03 CA ? GO:0005509 ... Q9NYQ6 N/A
    38460 7sz8:A (2.337) BS04 CA ? GO:0005509 ... Q9NYQ6 N/A
    38461 7sz8:A (2.337) BS05 CA ? GO:0005509 ... Q9NYQ6 N/A
    38462 7sz8:A (2.337) BS06 CA ? GO:0005509 ... Q9NYQ6 N/A
    38463 7sz8:A (2.337) BS07 CA ? GO:0005509 ... Q9NYQ6 N/A
    38464 7sz8:A (2.337) BS08 CA ? GO:0005509 ... Q9NYQ6 N/A
    38465 7sz8:B (2.337) BS01 CA ? GO:0005509 ... Q9NYQ6 N/A
    38466 7sz8:B (2.337) BS02 CA ? GO:0005509 ... Q9NYQ6 N/A
    38467 7sz8:B (2.337) BS03 CA ? GO:0005509 ... Q9NYQ6 N/A
    38468 7sz8:B (2.337) BS04 CA ? GO:0005509 ... Q9NYQ6 N/A
    38469 7sz8:B (2.337) BS05 CA ? GO:0005509 ... Q9NYQ6 N/A
    38470 7sz8:B (2.337) BS06 CA ? GO:0005509 ... Q9NYQ6 N/A
    38471 7sz8:B (2.337) BS07 CA ? GO:0005509 ... Q9NYQ6 N/A
    38472 7sz8:B (2.337) BS08 CA ? GO:0005509 ... Q9NYQ6 N/A
    38473 7t18:A (1.7) BS03 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38474 7t18:A (1.7) BS04 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38475 7t18:A (1.7) BS05 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38476 7t19:A (2.01) BS03 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38477 7t1a:A (1.81) BS03 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38478 7t1a:A (1.81) BS05 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38479 7t1a:A (1.81) BS06 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38480 7t1b:A (1.75) BS04 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38481 7t1b:A (1.75) BS05 CA 2.7.7.- GO:0003684 ... P12689 35610266
    38482 7t2q:A (1.95) BS01 CA ? GO:0000086 ... P0DP23 36371402
    38483 7t2q:A (1.95) BS02 CA ? GO:0000086 ... P0DP23 36371402
    38484 7t2q:A (1.95) BS03 CA ? GO:0000086 ... P0DP23 36371402
    38485 7t2q:A (1.95) BS04 CA ? GO:0000086 ... P0DP23 36371402
    38486 7t3s:A (2.966) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    38487 7t3s:A (2.966) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    38488 7t3s:A (2.966) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    38489 7t3t:A (3.8) BS04 CA ? GO:0000822 ... Q14573 35301323
    38490 7t3t:B (3.8) BS04 CA ? GO:0000822 ... Q14573 35301323
    38491 7t3t:C (3.8) BS04 CA ? GO:0000822 ... Q14573 35301323
    38492 7t3t:D (3.8) BS04 CA ? GO:0000822 ... Q14573 35301323
    38493 7t3u:A (3.7) BS03 CA ? GO:0000822 ... Q14573 35301323
    38494 7t3u:B (3.7) BS03 CA ? GO:0000822 ... Q14573 35301323
    38495 7t3u:C (3.7) BS03 CA ? GO:0000822 ... Q14573 35301323
    38496 7t3u:D (3.7) BS04 CA ? GO:0000822 ... Q14573 35301323
    38497 7t4s:F (3.1) BS01 CA ? GO:0001525 ... O60462 35275719
    38498 7t65:A (4.05) BS02 CA ? GO:0003151 ... P11716 35867837
    38499 7t65:B (4.05) BS02 CA ? GO:0003151 ... P11716 35867837
    38500 7t65:C (4.05) BS02 CA ? GO:0003151 ... P11716 35867837
    38501 7t65:D (4.05) BS02 CA ? GO:0003151 ... P11716 35867837
    38502 7t80:A (2.301) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    38503 7t80:A (2.301) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    38504 7t80:A (2.301) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    38505 7t80:B (2.301) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    38506 7t80:B (2.301) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    38507 7t80:B (2.301) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    38508 7t8d:A (1.38) BS01 CA ? N/A Q99972 36579626
    38509 7t8t:A (3.68) BS01 CA 3.1.4.11 GO:0001701 ... P10686 N/A
    38510 7t9u:A (2.46) BS01 CA ? GO:0002218 ... Q86WV6 35595822
    38511 7t9v:A (2.68) BS01 CA ? GO:0002218 ... Q86WV6 35595822
    38512 7t9v:B (2.68) BS02 CA ? GO:0002218 ... Q86WV6 35595822
    38513 7taa:A (1.98) BS02 CA 3.2.1.1 GO:0004556 ... P0C1B3 9283074
    38514 7tav:B (2.75) BS01 CA ? GO:0015689 ... A0A5D5LL32 N/A
    38515 7tav:C (2.75) BS01 CA ? GO:0015689 ... A0A5D5LL32 N/A
    38516 7tav:F (2.75) BS01 CA ? GO:0015689 ... A0A5D5LL32 N/A
    38517 7tba:A (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38518 7tba:A (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38519 7tba:B (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38520 7tba:B (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38521 7tba:C (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38522 7tba:C (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38523 7tba:D (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38524 7tba:D (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38525 7tba:E (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38526 7tba:E (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38527 7tba:F (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38528 7tba:F (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38529 7tba:G (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38530 7tba:G (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38531 7tba:H (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38532 7tba:H (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38533 7tba:I (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38534 7tba:I (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38535 7tba:J (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38536 7tba:J (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38537 7tba:K (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38538 7tba:K (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38539 7tba:L (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38540 7tba:L (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38541 7tba:M (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38542 7tba:M (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38543 7tba:N (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38544 7tba:N (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38545 7tba:O (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38546 7tba:O (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38547 7tba:P (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38548 7tba:P (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38549 7tba:Q (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38550 7tba:Q (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38551 7tba:R (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38552 7tba:R (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38553 7tba:S (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38554 7tba:S (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38555 7tba:T (3.5) BS02 CA ? GO:0001849 ... P02741 36468184
    38556 7tba:T (3.5) BS03 CA ? GO:0001849 ... P02741 36468184
    38557 7tci:B (3.9) BS01 CA ? GO:0000086 ... P0DP23 35768468
    38558 7tci:B (3.9) BS02 CA ? GO:0000086 ... P0DP23 35768468
    38559 7tci:B (3.9) BS03 CA ? GO:0000086 ... P0DP23 35768468
    38560 7tci:D (3.9) BS01 CA ? GO:0000086 ... P0DP23 35768468
    38561 7tci:D (3.9) BS02 CA ? GO:0000086 ... P0DP23 35768468
    38562 7tci:D (3.9) BS03 CA ? GO:0000086 ... P0DP23 35768468
    38563 7tci:F (3.9) BS01 CA ? GO:0000086 ... P0DP23 35768468
    38564 7tci:F (3.9) BS02 CA ? GO:0000086 ... P0DP23 35768468
    38565 7tci:F (3.9) BS03 CA ? GO:0000086 ... P0DP23 35768468
    38566 7tci:H (3.9) BS01 CA ? GO:0000086 ... P0DP23 35768468
    38567 7tci:H (3.9) BS02 CA ? GO:0000086 ... P0DP23 35768468
    38568 7tci:H (3.9) BS03 CA ? GO:0000086 ... P0DP23 35768468
    38569 7tcp:B (3.84) BS01 CA ? GO:0000086 ... P0DP23 35768468
    38570 7tcp:B (3.84) BS02 CA ? GO:0000086 ... P0DP23 35768468
    38571 7tcp:B (3.84) BS03 CA ? GO:0000086 ... P0DP23 35768468
    38572 7tcp:D (3.84) BS01 CA ? GO:0000086 ... P0DP23 35768468
    38573 7tcp:D (3.84) BS02 CA ? GO:0000086 ... P0DP23 35768468
    38574 7tcp:D (3.84) BS03 CA ? GO:0000086 ... P0DP23 35768468
    38575 7tcp:F (3.84) BS01 CA ? GO:0000086 ... P0DP23 35768468
    38576 7tcp:F (3.84) BS02 CA ? GO:0000086 ... P0DP23 35768468
    38577 7tcp:F (3.84) BS03 CA ? GO:0000086 ... P0DP23 35768468
    38578 7tcp:H (3.84) BS01 CA ? GO:0000086 ... P0DP23 35768468
    38579 7tcp:H (3.84) BS02 CA ? GO:0000086 ... P0DP23 35768468
    38580 7tcp:H (3.84) BS03 CA ? GO:0000086 ... P0DP23 35768468
    38581 7tct:A (2.501) BS01 CA ? GO:0007155 ... P08514 36113427
    38582 7tct:A (2.501) BS02 CA ? GO:0007155 ... P08514 36113427
    38583 7tct:A (2.501) BS03 CA ? GO:0007155 ... P08514 36113427
    38584 7tct:A (2.501) BS04 CA ? GO:0007155 ... P08514 36113427
    38585 7tct:B (2.501) BS02 CA ? N/A P05106 36113427
    38586 7tct:B (2.501) BS03 CA ? N/A P05106 36113427
    38587 7tct:C (2.501) BS01 CA ? GO:0007155 ... P08514 36113427
    38588 7tct:C (2.501) BS02 CA ? GO:0007155 ... P08514 36113427
    38589 7tct:C (2.501) BS03 CA ? GO:0007155 ... P08514 36113427
    38590 7tct:C (2.501) BS04 CA ? GO:0007155 ... P08514 36113427
    38591 7tct:D (2.501) BS02 CA ? N/A P05106 36113427
    38592 7tct:D (2.501) BS03 CA ? N/A P05106 36113427
    38593 7td8:A (2.6) BS01 CA ? GO:0007155 ... P08514 36113427
    38594 7td8:A (2.6) BS02 CA ? GO:0007155 ... P08514 36113427
    38595 7td8:A (2.6) BS03 CA ? GO:0007155 ... P08514 36113427
    38596 7td8:A (2.6) BS04 CA ? GO:0007155 ... P08514 36113427
    38597 7td8:B (2.6) BS02 CA ? N/A P05106 36113427
    38598 7td8:B (2.6) BS03 CA ? N/A P05106 36113427
    38599 7td8:C (2.6) BS01 CA ? GO:0007155 ... P08514 36113427
    38600 7td8:C (2.6) BS02 CA ? GO:0007155 ... P08514 36113427
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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