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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    38201 7roo:A (1.52) BS06 CA ? GO:0046872 ... A0A1Y0K711 35212625
    38202 7roo:A (1.52) BS07 CA ? GO:0046872 ... A0A1Y0K711 35212625
    38203 7roo:A (1.52) BS08 CA ? GO:0046872 ... A0A1Y0K711 35212625
    38204 7roo:A (1.52) BS09 CA ? GO:0046872 ... A0A1Y0K711 35212625
    38205 7roo:A (1.52) BS10 CA ? GO:0046872 ... A0A1Y0K711 35212625
    38206 7roo:A (1.52) BS11 CA ? GO:0046872 ... A0A1Y0K711 35212625
    38207 7roo:A (1.52) BS12 CA ? GO:0046872 ... A0A1Y0K711 35212625
    38208 7rpk:H (2.7) BS01 CA 3.1.-.- GO:0007267 ... Q62226 34707294
    38209 7rpk:H (2.7) BS02 CA 3.1.-.- GO:0007267 ... Q62226 34707294
    38210 7rr3:A (2.24) BS01 CA 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 34975792
    38211 7rr3:A (2.24) BS02 CA 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 34975792
    38212 7rr3:A (2.24) BS03 CA 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 34975792
    38213 7rwj:A (3.5) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    38214 7rwj:A (3.5) BS03 CA ? GO:0005245 ... Q4WA18 35562175
    38215 7rwj:B (3.5) BS01 CA ? GO:0005245 ... Q4WA18 35562175
    38216 7rwj:B (3.5) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    38217 7rwx:A (1.6) BS01 CA ? GO:0005506 ... P0ABE7 35642584
    38218 7rx2:A (2.7) BS04 CA ? GO:0005245 ... Q4WA18 35562175
    38219 7rx2:A (2.7) BS05 CA ? GO:0005245 ... Q4WA18 35562175
    38220 7rx2:B (2.7) BS01 CA ? GO:0005245 ... Q4WA18 35562175
    38221 7rx2:B (2.7) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    38222 7rxg:A (2.28) BS04 CA ? GO:0005245 ... Q4WA18 35562175
    38223 7rxg:A (2.28) BS05 CA ? GO:0005245 ... Q4WA18 35562175
    38224 7rxg:B (2.28) BS01 CA ? GO:0005245 ... Q4WA18 35562175
    38225 7rxg:B (2.28) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    38226 7rxh:A (2.3) BS01 CA ? GO:0005245 ... Q4WA18 35562175
    38227 7rxh:A (2.3) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    38228 7s05:A (3.1) BS01 CA 2.7.8.17 GO:0000139 ... Q3T906 35332324
    38229 7s05:B (3.1) BS01 CA 2.7.8.17 GO:0000139 ... Q3T906 35332324
    38230 7s0i:A (2.892) BS01 CA 3.2.1.18 GO:0004308 ... A0A0X9QTS2 34809451
    38231 7s0i:A (2.892) BS02 CA 3.2.1.18 GO:0004308 ... A0A0X9QTS2 34809451
    38232 7s0t:A (3.05) BS04 CA 2.7.7.7 GO:0000166 ... P14284 35217661
    38233 7s14:A (1.65) BS02 CA 1.-.-.- GO:0000166 ... Q4QJZ7 35195438
    38234 7s14:C (1.65) BS02 CA 1.-.-.- GO:0000166 ... Q4QJZ7 35195438
    38235 7s3d:L (2.91) BS06 CA ? GO:0009522 ... B4WP22 34793839
    38236 7s3d:U (2.91) BS06 CA ? GO:0009522 ... B4WP22 34793839
    38237 7s3d:l (2.91) BS07 CA ? GO:0009522 ... B4WP22 34793839
    38238 7s4z:A (1.9) BS01 CA 3.4.21.64 GO:0004252 ... P06873 35511023
    38239 7s4z:A (1.9) BS02 CA 3.4.21.64 GO:0004252 ... P06873 35511023
    38240 7s5c:A (1.86) BS04 CA ? N/A Q1D6H3 35150605
    38241 7s5c:B (1.86) BS05 CA ? N/A Q1D6H3 35150605
    38242 7s5c:C (1.86) BS01 CA ? N/A Q1D6H3 35150605
    38243 7s5c:D (1.86) BS04 CA ? N/A Q1D6H3 35150605
    38244 7s5c:E (1.86) BS03 CA ? N/A Q1D6H3 35150605
    38245 7s5c:F (1.86) BS05 CA ? N/A Q1D6H3 35150605
    38246 7s5c:G (1.86) BS02 CA ? N/A Q1D6H3 35150605
    38247 7s5c:H (1.86) BS04 CA ? N/A Q1D6H3 35150605
    38248 7s5c:I (1.86) BS03 CA ? N/A Q1D6H3 35150605
    38249 7s5c:J (1.86) BS04 CA ? N/A Q1D6H3 35150605
    38250 7s5k:A (1.95) BS02 CA ? N/A Q1D6H3 35150605
    38251 7s5k:B (1.95) BS04 CA ? N/A Q1D6H3 35150605
    38252 7s5k:D (1.95) BS02 CA ? N/A Q1D6H3 35150605
    38253 7s5k:E (1.95) BS02 CA ? N/A Q1D6H3 35150605
    38254 7s5k:F (1.95) BS03 CA ? N/A Q1D6H3 35150605
    38255 7s5k:G (1.95) BS03 CA ? N/A Q1D6H3 35150605
    38256 7s5k:H (1.95) BS04 CA ? N/A Q1D6H3 35150605
    38257 7s5k:I (1.95) BS01 CA ? N/A Q1D6H3 35150605
    38258 7s5k:J (1.95) BS03 CA ? N/A Q1D6H3 35150605
    38259 7s6e:A (1.973) BS01 CA ? N/A Q0I663 N/A
    38260 7s6e:A (1.973) BS02 CA ? N/A Q0I663 N/A
    38261 7s6e:A (1.973) BS03 CA ? N/A Q0I663 N/A
    38262 7s6e:A (1.973) BS04 CA ? N/A Q0I663 N/A
    38263 7s6e:B (1.973) BS01 CA ? N/A Q0I663 N/A
    38264 7s6e:B (1.973) BS02 CA ? N/A Q0I663 N/A
    38265 7s6e:B (1.973) BS03 CA ? N/A Q0I663 N/A
    38266 7s6f:A (1.8) BS01 CA ? GO:0046872 ... Q7U3J0 N/A
    38267 7s6f:A (1.8) BS02 CA ? GO:0046872 ... Q7U3J0 N/A
    38268 7s6f:A (1.8) BS03 CA ? GO:0046872 ... Q7U3J0 N/A
    38269 7s6n:A (2.7) BS01 CA ?
    2.7.8.17    		 GO:0005509 ... Q54MP1
    Q5RGJ8    		 35939698
    38270 7s6n:B (2.7) BS01 CA ?
    2.7.8.17    		 GO:0005509 ... Q54MP1
    Q5RGJ8    		 35939698
    38271 7s7l:A (2.34) BS01 CA 3.4.24.17 GO:0004222 ... P08254 35101440
    38272 7s7l:A (2.34) BS02 CA 3.4.24.17 GO:0004222 ... P08254 35101440
    38273 7s7l:A (2.34) BS03 CA 3.4.24.17 GO:0004222 ... P08254 35101440
    38274 7s7m:A (3.0) BS01 CA 3.4.24.17 GO:0004222 ... P08254 35101440
    38275 7s7m:A (3.0) BS02 CA 3.4.24.17 GO:0004222 ... P08254 35101440
    38276 7s7m:A (3.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 35101440
    38277 7s8d:A (2.02) BS01 CA ? GO:0042802 ... Q9F6L0 35202658
    38278 7s8d:B (2.02) BS01 CA ? GO:0042802 ... Q9F6L0 35202658
    38279 7s8k:A (2.55) BS01 CA 3.2.1.4 GO:0000272 ... A0A0U3SGP7 N/A
    38280 7s8k:B (2.55) BS01 CA 3.2.1.4 GO:0000272 ... A0A0U3SGP7 N/A
    38281 7sa3:A (2.25) BS03 CA ? GO:0009055 ... B4WKH9 34801554
    38282 7sa3:C (2.25) BS02 CA ? GO:0005737 ... B4WKI2 34801554
    38283 7sb6:A (2.588) BS01 CA N/A GO:0005509 ... N/A 36911992
    38284 7sb6:A (2.588) BS02 CA N/A GO:0005509 ... N/A 36911992
    38285 7sb6:A (2.588) BS03 CA N/A GO:0005509 ... N/A 36911992
    38286 7sb6:A (2.588) BS04 CA N/A GO:0005509 ... N/A 36911992
    38287 7sb6:B (2.588) BS01 CA N/A GO:0005509 ... N/A 36911992
    38288 7sb6:B (2.588) BS02 CA N/A GO:0005509 ... N/A 36911992
    38289 7sb6:B (2.588) BS03 CA N/A GO:0005509 ... N/A 36911992
    38290 7sb6:B (2.588) BS04 CA N/A GO:0005509 ... N/A 36911992
    38291 7sb6:C (2.588) BS01 CA N/A GO:0005509 ... N/A 36911992
    38292 7sb6:C (2.588) BS02 CA N/A GO:0005509 ... N/A 36911992
    38293 7sb6:C (2.588) BS03 CA N/A GO:0005509 ... N/A 36911992
    38294 7sb6:C (2.588) BS04 CA N/A GO:0005509 ... N/A 36911992
    38295 7sc2:A (1.814) BS01 CA ? GO:0005509 ... P19429
    P63316    		 34981771
    38296 7sc3:A (2.229) BS01 CA ? GO:0005509 ... P19429
    P63316    		 34981771
    38297 7scm:A (2.272) BS01 CA N/A GO:0005509 ... N/A 36911992
    38298 7scm:A (2.272) BS02 CA N/A GO:0005509 ... N/A 36911992
    38299 7scm:A (2.272) BS03 CA N/A GO:0005509 ... N/A 36911992
    38300 7scm:B (2.272) BS01 CA N/A GO:0005509 ... N/A 36911992
    38301 7scm:B (2.272) BS02 CA N/A GO:0005509 ... N/A 36911992
    38302 7scm:B (2.272) BS03 CA N/A GO:0005509 ... N/A 36911992
    38303 7sg1:A (3.1) BS02 CA ? GO:0006955 ... P01909 35065967
    38304 7sg1:E (3.1) BS02 CA N/A N/A N/A 35065967
    38305 7sg2:B (3.1) BS02 CA ? GO:0006955 ... Q5Y7D3 35065967
    38306 7sg2:E (3.1) BS02 CA N/A N/A N/A 35065967
    38307 7sgx:A (3.13) BS01 CA N/A GO:0005509 ... N/A 36911992
    38308 7sgx:A (3.13) BS02 CA N/A GO:0005509 ... N/A 36911992
    38309 7sgx:A (3.13) BS03 CA N/A GO:0005509 ... N/A 36911992
    38310 7sgx:A (3.13) BS04 CA N/A GO:0005509 ... N/A 36911992
    38311 7sgx:A (3.13) BS05 CA N/A GO:0005509 ... N/A 36911992
    38312 7sgx:A (3.13) BS06 CA N/A GO:0005509 ... N/A 36911992
    38313 7sgx:A (3.13) BS07 CA N/A GO:0005509 ... N/A 36911992
    38314 7sgx:B (3.13) BS01 CA N/A GO:0005509 ... N/A 36911992
    38315 7sgx:B (3.13) BS02 CA N/A GO:0005509 ... N/A 36911992
    38316 7sgx:B (3.13) BS03 CA N/A GO:0005509 ... N/A 36911992
    38317 7sgx:B (3.13) BS04 CA N/A GO:0005509 ... N/A 36911992
    38318 7sgx:B (3.13) BS05 CA N/A GO:0005509 ... N/A 36911992
    38319 7sgx:B (3.13) BS06 CA N/A GO:0005509 ... N/A 36911992
    38320 7sgx:B (3.13) BS07 CA N/A GO:0005509 ... N/A 36911992
    38321 7sgx:B (3.13) BS08 CA N/A GO:0005509 ... N/A 36911992
    38322 7sgx:C (3.13) BS01 CA N/A GO:0005509 ... N/A 36911992
    38323 7sgx:C (3.13) BS02 CA N/A GO:0005509 ... N/A 36911992
    38324 7sgx:C (3.13) BS03 CA N/A GO:0005509 ... N/A 36911992
    38325 7sgx:C (3.13) BS04 CA N/A GO:0005509 ... N/A 36911992
    38326 7sgx:C (3.13) BS05 CA N/A GO:0005509 ... N/A 36911992
    38327 7sgx:C (3.13) BS06 CA N/A GO:0005509 ... N/A 36911992
    38328 7sgx:C (3.13) BS07 CA N/A GO:0005509 ... N/A 36911992
    38329 7sgx:C (3.13) BS08 CA N/A GO:0005509 ... N/A 36911992
    38330 7sgx:D (3.13) BS01 CA N/A GO:0005509 ... N/A 36911992
    38331 7sgx:D (3.13) BS02 CA N/A GO:0005509 ... N/A 36911992
    38332 7sgx:D (3.13) BS03 CA N/A GO:0005509 ... N/A 36911992
    38333 7sgx:D (3.13) BS04 CA N/A GO:0005509 ... N/A 36911992
    38334 7sgx:D (3.13) BS05 CA N/A GO:0005509 ... N/A 36911992
    38335 7sgx:D (3.13) BS06 CA N/A GO:0005509 ... N/A 36911992
    38336 7sgx:D (3.13) BS07 CA N/A GO:0005509 ... N/A 36911992
    38337 7shq:B (2.34) BS01 CA ? GO:0000086 ... P0DP23 35857468
    38338 7shq:B (2.34) BS02 CA ? GO:0000086 ... P0DP23 35857468
    38339 7sib:A (1.78) BS01 CA ? N/A Q99972 36579626
    38340 7sie:A (1.3) BS01 CA ? N/A Q5HKE8 36702253
    38341 7sij:A (1.54) BS01 CA ? N/A Q99972 36579626
    38342 7sil:A (2.7) BS02 CA ? GO:0004930 ... P41180 34916296
    38343 7sil:A (2.7) BS03 CA ? GO:0004930 ... P41180 34916296
    38344 7sil:A (2.7) BS04 CA ? GO:0004930 ... P41180 34916296
    38345 7sil:B (2.7) BS03 CA ? GO:0004930 ... P41180 34916296
    38346 7sil:B (2.7) BS04 CA ? GO:0004930 ... P41180 34916296
    38347 7sil:B (2.7) BS05 CA ? GO:0004930 ... P41180 34916296
    38348 7sim:A (2.7) BS02 CA ? GO:0004930 ... P41180 34916296
    38349 7sim:A (2.7) BS03 CA ? GO:0004930 ... P41180 34916296
    38350 7sim:B (2.7) BS03 CA ? GO:0004930 ... P41180 34916296
    38351 7sim:B (2.7) BS04 CA ? GO:0004930 ... P41180 34916296
    38352 7sj2:A (2.3) BS01 CA ?
    2.7.8.17    		 GO:0005509 ... Q54MP1
    Q5RGJ8    		 35939698
    38353 7sj2:B (2.3) BS01 CA ?
    2.7.8.17    		 GO:0005509 ... Q54MP1
    Q5RGJ8    		 35939698
    38354 7sjk:A (1.208) BS01 CA ? N/A P80544 36702253
    38355 7sjk:B (1.208) BS01 CA ? N/A P80544 36702253
    38356 7sjt:A (1.54) BS01 CA ? N/A Q99972 36579626
    38357 7sju:A (1.391) BS01 CA ? N/A Q99972 36579626
    38358 7sjv:A (1.39) BS01 CA ? N/A Q99972 36579626
    38359 7sjw:A (1.38) BS01 CA ? N/A Q99972 36579626
    38360 7skd:A (1.712) BS01 CA ? N/A Q99972 36579626
    38361 7ske:A (1.24) BS01 CA ? N/A Q99972 36579626
    38362 7skf:A (1.282) BS01 CA ? N/A Q99972 36579626
    38363 7skg:A (1.33) BS01 CA ? N/A Q99972 36579626
    38364 7skh:A (2.265) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    38365 7skh:A (2.265) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    38366 7skh:A (2.265) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    38367 7skh:B (2.265) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    38368 7skh:B (2.265) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    38369 7skh:B (2.265) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    38370 7skl:A (1.6) BS01 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38371 7skl:A (1.6) BS02 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38372 7skl:A (1.6) BS03 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38373 7skl:C (1.6) BS02 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38374 7skl:C (1.6) BS03 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38375 7skl:C (1.6) BS04 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38376 7skm:A (1.85) BS01 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38377 7skm:A (1.85) BS02 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38378 7skm:A (1.85) BS03 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38379 7skm:C (1.85) BS02 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38380 7skm:C (1.85) BS03 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38381 7skm:C (1.85) BS04 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    38382 7skx:C (1.5) BS02 CA 3.4.21.64 GO:0004252 ... P06873 35637302
    38383 7skx:C (1.5) BS03 CA 3.4.21.64 GO:0004252 ... P06873 35637302
    38384 7skx:C (1.5) BS04 CA 3.4.21.64 GO:0004252 ... P06873 35637302
    38385 7skx:C (1.5) BS05 CA 3.4.21.64 GO:0004252 ... P06873 35637302
    38386 7smh:A (1.65) BS01 CA ? N/A Q2G2B2 36702253
    38387 7smh:B (1.65) BS01 CA ? N/A Q2G2B2 36702253
    38388 7smh:C (1.65) BS01 CA ? N/A Q2G2B2 36702253
    38389 7smh:D (1.65) BS01 CA ? N/A Q2G2B2 36702253
    38390 7sp2:A (2.75) BS01 CA ? N/A P80544 N/A
    38391 7spq:A (1.8) BS01 CA ? N/A C5AMM8 N/A
    38392 7sq2:B (2.6) BS01 CA 3.1.4.11 GO:0004435 ... Q01970 20966218
    38393 7srv:A (2.03) BS03 CA 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 35691342
    38394 7srv:B (2.03) BS03 CA 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 35691342
    38395 7srv:C (2.03) BS03 CA 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 35691342
    38396 7srv:C (2.03) BS04 CA 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 35691342
    38397 7srv:D (2.03) BS03 CA 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 35691342
    38398 7srv:E (2.03) BS03 CA 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 35691342
    38399 7srv:E (2.03) BS04 CA 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 35691342
    38400 7srv:F (2.03) BS03 CA 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 35691342
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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