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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37801 7pq9:CCC (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    37802 7pq9:DDD (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    37803 7pq9:DDD (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    37804 7pq9:DDD (2.8) BS03 CA N/A GO:0003700 ... N/A 37378428
    37805 7pq9:EEE (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    37806 7pq9:FFF (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    37807 7pq9:GGG (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    37808 7pq9:GGG (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    37809 7pq9:HHH (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    37810 7pq9:HHH (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    37811 7pq9:III (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    37812 7pq9:III (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    37813 7pq9:JJJ (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    37814 7pqe:B (3.7) BS01 CA ? GO:0000086 ... P0DP24 34702826
    37815 7pqv:A (2.13) BS02 CA 2.7.12.2 GO:0004672 ... Q02750 35195996
    37816 7prg:A (1.85) BS01 CA ? GO:0030246 ... A0A069Q9V4 35017516
    37817 7prg:A (1.85) BS02 CA ? GO:0030246 ... A0A069Q9V4 35017516
    37818 7prg:B (1.85) BS01 CA ? GO:0030246 ... A0A069Q9V4 35017516
    37819 7prg:B (1.85) BS02 CA ? GO:0030246 ... A0A069Q9V4 35017516
    37820 7prg:C (1.85) BS01 CA ? GO:0030246 ... A0A069Q9V4 35017516
    37821 7prg:C (1.85) BS02 CA ? GO:0030246 ... A0A069Q9V4 35017516
    37822 7prg:D (1.85) BS02 CA ? GO:0030246 ... A0A069Q9V4 35017516
    37823 7prg:D (1.85) BS03 CA ? GO:0030246 ... A0A069Q9V4 35017516
    37824 7prr:A (1.8) BS02 CA ? N/A Q9HVF8 35254130
    37825 7psp:A (2.61) BS02 CA ? GO:0001837 ... P26447 N/A
    37826 7psp:A (2.61) BS03 CA ? GO:0001837 ... P26447 N/A
    37827 7psp:B (2.61) BS03 CA ? GO:0001837 ... P26447 N/A
    37828 7psp:B (2.61) BS04 CA ? GO:0001837 ... P26447 N/A
    37829 7psq:A (1.91) BS01 CA ? GO:0001837 ... P26447 N/A
    37830 7psq:A (1.91) BS02 CA ? GO:0001837 ... P26447 N/A
    37831 7psq:C (1.91) BS01 CA ? GO:0001837 ... P26447 N/A
    37832 7psq:C (1.91) BS02 CA ? GO:0001837 ... P26447 N/A
    37833 7psq:E (1.91) BS02 CA ? GO:0001837 ... P26447 N/A
    37834 7psq:E (1.91) BS03 CA ? GO:0001837 ... P26447 N/A
    37835 7psq:G (1.91) BS02 CA ? GO:0001837 ... P26447 N/A
    37836 7psq:G (1.91) BS03 CA ? GO:0001837 ... P26447 N/A
    37837 7psq:G (1.91) BS04 CA ? GO:0001837 ... P26447 N/A
    37838 7psy:A (0.9) BS02 CA ? GO:0030246 ... Q9HYN5 35017516
    37839 7psy:A (0.9) BS03 CA ? GO:0030246 ... Q9HYN5 35017516
    37840 7psy:B (0.9) BS02 CA ? GO:0030246 ... Q9HYN5 35017516
    37841 7psy:B (0.9) BS03 CA ? GO:0030246 ... Q9HYN5 35017516
    37842 7psy:C (0.9) BS02 CA ? GO:0030246 ... Q9HYN5 35017516
    37843 7psy:C (0.9) BS03 CA ? GO:0030246 ... Q9HYN5 35017516
    37844 7psy:D (0.9) BS02 CA ? GO:0030246 ... Q9HYN5 35017516
    37845 7psy:D (0.9) BS03 CA ? GO:0030246 ... Q9HYN5 35017516
    37846 7psz:A (1.898) BS02 CA ? GO:0000086 ... P0DP23 35945584
    37847 7psz:A (1.898) BS03 CA ? GO:0000086 ... P0DP23 35945584
    37848 7psz:A (1.898) BS04 CA ? GO:0000086 ... P0DP23 35945584
    37849 7psz:A (1.898) BS05 CA ? GO:0000086 ... P0DP23 35945584
    37850 7pth:A (1.85) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    37851 7pth:B (1.85) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    37852 7pth:C (1.85) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    37853 7pth:D (1.85) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    37854 7ptj:A (2.1) BS04 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    37855 7ptj:B (2.1) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    37856 7ptj:C (2.1) BS03 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    37857 7ptj:D (2.1) BS02 CA 3.1.6.6 GO:0005737 ... O69787 35503214
    37858 7ptr:A (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    37859 7ptr:A (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    37860 7ptr:A (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    37861 7ptr:B (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    37862 7ptr:B (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    37863 7ptr:B (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    37864 7ptr:C (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    37865 7ptr:C (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    37866 7ptr:C (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    37867 7ptr:D (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    37868 7ptr:D (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    37869 7ptr:D (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    37870 7ptr:E (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    37871 7ptr:E (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    37872 7ptr:E (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    37873 7ptr:F (3.46) BS01 CA ? GO:0005576 ... P25062 34818541
    37874 7ptr:F (3.46) BS02 CA ? GO:0005576 ... P25062 34818541
    37875 7ptr:F (3.46) BS03 CA ? GO:0005576 ... P25062 34818541
    37876 7pu9:A (2.279) BS03 CA ? GO:0000086 ... P0DP23 35945584
    37877 7pu9:A (2.279) BS04 CA ? GO:0000086 ... P0DP23 35945584
    37878 7pu9:A (2.279) BS05 CA ? GO:0000086 ... P0DP23 35945584
    37879 7pu9:A (2.279) BS06 CA ? GO:0000086 ... P0DP23 35945584
    37880 7pug:A (2.66) BS03 CA N/A N/A N/A 35503213
    37881 7pul:A (1.4) BS01 CA 3.2.1.52 GO:0004553 ... Q839P8 35241669
    37882 7pvn:A (2.71) BS02 CA 6.2.1.45 GO:0004792 ... A0AVT1 35970836
    37883 7pvn:B (2.71) BS02 CA 6.2.1.45 GO:0004792 ... A0AVT1 35970836
    37884 7pxe:A (2.38) BS01 CA ? GO:0005216 ... Q03720 34887422
    37885 7pxe:A (2.38) BS02 CA ? GO:0005216 ... Q03720 34887422
    37886 7pxe:B (2.38) BS01 CA ? GO:0005216 ... Q03720 34887422
    37887 7pxe:B (2.38) BS02 CA ? GO:0005216 ... Q03720 34887422
    37888 7pxe:C (2.38) BS01 CA ? GO:0005216 ... Q03720 34887422
    37889 7pxe:C (2.38) BS02 CA ? GO:0005216 ... Q03720 34887422
    37890 7pxe:D (2.38) BS01 CA ? GO:0005216 ... Q03720 34887422
    37891 7pxe:D (2.38) BS02 CA ? GO:0005216 ... Q03720 34887422
    37892 7pxg:A (2.73) BS02 CA ? GO:0005216 ... Q03720 34887422
    37893 7pxg:A (2.73) BS03 CA ? GO:0005216 ... Q03720 34887422
    37894 7pxg:B (2.73) BS02 CA ? GO:0005216 ... Q03720 34887422
    37895 7pxg:B (2.73) BS03 CA ? GO:0005216 ... Q03720 34887422
    37896 7pxg:C (2.73) BS02 CA ? GO:0005216 ... Q03720 34887422
    37897 7pxg:C (2.73) BS03 CA ? GO:0005216 ... Q03720 34887422
    37898 7pxg:D (2.73) BS02 CA ? GO:0005216 ... Q03720 34887422
    37899 7pxg:D (2.73) BS03 CA ? GO:0005216 ... Q03720 34887422
    37900 7pxh:A (2.59) BS01 CA ? GO:0005216 ... Q03720 34887422
    37901 7pxh:A (2.59) BS02 CA ? GO:0005216 ... Q03720 34887422
    37902 7pxh:B (2.59) BS01 CA ? GO:0005216 ... Q03720 34887422
    37903 7pxh:B (2.59) BS02 CA ? GO:0005216 ... Q03720 34887422
    37904 7pxh:C (2.59) BS02 CA ? GO:0005216 ... Q03720 34887422
    37905 7pxh:C (2.59) BS03 CA ? GO:0005216 ... Q03720 34887422
    37906 7pxh:D (2.59) BS02 CA ? GO:0005216 ... Q03720 34887422
    37907 7pxh:D (2.59) BS03 CA ? GO:0005216 ... Q03720 34887422
    37908 7pxq:A (2.3) BS01 CA N/A N/A N/A 35503213
    37909 7q0w:A (1.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35486702
    37910 7q0x:A (1.09) BS04 CA 3.4.21.4 GO:0004175 ... P00760 35486702
    37911 7q1w:A (1.65) BS03 CA ? GO:0005975 ... A7B6A6 34936658
    37912 7q20:A (1.95) BS03 CA ? GO:0005975 ... A7B6A6 34936658
    37913 7q20:A (1.95) BS04 CA ? GO:0005975 ... A7B6A6 34936658
    37914 7q20:A (1.95) BS05 CA ? GO:0005975 ... A7B6A6 34936658
    37915 7q20:G (1.95) BS03 CA ? GO:0005975 ... A7B6A6 34936658
    37916 7q21:D (2.9) BS04 CA 7.1.1.9 GO:0004129 ... Q79VD7 34910901
    37917 7q21:d (2.9) BS04 CA 7.1.1.9 GO:0004129 ... Q79VD7 34910901
    37918 7q2a:A (1.6) BS02 CA 1.13.11.2 GO:0018577 ... Q0S9X1 35346686
    37919 7q2a:B (1.6) BS02 CA 1.13.11.2 GO:0018577 ... Q0S9X1 35346686
    37920 7q2a:C (1.6) BS02 CA 1.13.11.2 GO:0018577 ... Q0S9X1 35346686
    37921 7q2a:C (1.6) BS03 CA 1.13.11.2 GO:0018577 ... Q0S9X1 35346686
    37922 7q2a:D (1.6) BS02 CA 1.13.11.2 GO:0018577 ... Q0S9X1 35346686
    37923 7q3g:A (3.5) BS01 CA ? GO:0004888 ... V4JF97 36480474
    37924 7q3g:A (3.5) BS02 CA ? GO:0004888 ... V4JF97 36480474
    37925 7q3g:B (3.5) BS01 CA ? GO:0004888 ... V4JF97 36480474
    37926 7q3g:B (3.5) BS02 CA ? GO:0004888 ... V4JF97 36480474
    37927 7q3g:C (3.5) BS01 CA ? GO:0004888 ... V4JF97 36480474
    37928 7q3g:C (3.5) BS02 CA ? GO:0004888 ... V4JF97 36480474
    37929 7q3g:D (3.5) BS01 CA ? GO:0004888 ... V4JF97 36480474
    37930 7q3g:D (3.5) BS02 CA ? GO:0004888 ... V4JF97 36480474
    37931 7q3g:E (3.5) BS01 CA ? GO:0004888 ... V4JF97 36480474
    37932 7q3g:E (3.5) BS02 CA ? GO:0004888 ... V4JF97 36480474
    37933 7q87:A (1.73) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    37934 7q87:A (1.73) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    37935 7q87:A (1.73) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    37936 7q87:A (1.73) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    37937 7q87:A (1.73) BS08 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    37938 7q87:A (1.73) BS09 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    37939 7qb5:111 (1.728) BS02 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... V9VEF3 35425270
    37940 7qb5:111 (1.728) BS03 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... V9VEF3 35425270
    37941 7qb5:444 (1.728) BS01 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... V9VEF3 35425270
    37942 7qba:H (3.78) BS01 CA 1.7.2.4 GO:0004129 ... P19573 35896743
    37943 7qba:I (3.78) BS01 CA 1.7.2.4 GO:0004129 ... P19573 35896743
    37944 7qbd:A (4.18) BS02 CA ? GO:0005515 ... P20062 35218573
    37945 7qbd:B (4.18) BS02 CA ? GO:0005515 ... P20062 35218573
    37946 7qbd:C (4.18) BS01 CA ? N/A Q9NPF0 35218573
    37947 7qbd:C (4.18) BS02 CA ? N/A Q9NPF0 35218573
    37948 7qbd:D (4.18) BS01 CA ? N/A Q9NPF0 35218573
    37949 7qbd:D (4.18) BS02 CA ? N/A Q9NPF0 35218573
    37950 7qbe:B (3.0) BS01 CA ? N/A Q9NPF0 35218573
    37951 7qbe:B (3.0) BS02 CA ? N/A Q9NPF0 35218573
    37952 7qbe:D (3.0) BS01 CA ? N/A Q9NPF0 35218573
    37953 7qbe:D (3.0) BS02 CA ? N/A Q9NPF0 35218573
    37954 7qbf:C (1.85) BS01 CA ? N/A Q9NPF0 35218573
    37955 7qbf:C (1.85) BS02 CA ? N/A Q9NPF0 35218573
    37956 7qbg:B (2.69) BS01 CA ? N/A Q9NPF0 35218573
    37957 7qbg:B (2.69) BS02 CA ? N/A Q9NPF0 35218573
    37958 7qbg:D (2.69) BS01 CA ? N/A Q9NPF0 35218573
    37959 7qbg:D (2.69) BS02 CA ? N/A Q9NPF0 35218573
    37960 7qbg:E (2.69) BS01 CA N/A N/A N/A 35218573
    37961 7qbg:G (2.69) BS01 CA N/A N/A N/A 35218573
    37962 7qcl:A (3.36) BS04 CA ? N/A Q02817 37031240
    37963 7qcl:B (3.36) BS04 CA ? N/A Q02817 37031240
    37964 7qcn:A (3.4) BS01 CA ? N/A Q02817 37031240
    37965 7qcn:B (3.4) BS01 CA ? N/A Q02817 37031240
    37966 7qcu:A (3.25) BS01 CA ? N/A Q02817 37031240
    37967 7qcu:B (3.25) BS01 CA ? N/A Q02817 37031240
    37968 7qfi:B (1.5) BS01 CA ? N/A Q5FLN0 38838019
    37969 7qfy:A (1.62) BS02 CA 3.4.24.- GO:0004222 ... M1UZ70 N/A
    37970 7qfy:A (1.62) BS03 CA 3.4.24.- GO:0004222 ... M1UZ70 N/A
    37971 7qga:A (1.5) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 35080883
    37972 7qgl:A (1.5) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 35080883
    37973 7qgm:A (2.9) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 35080883
    37974 7qh1:A (2.74) BS03 CA 3.4.24.26 GO:0004222 ... P14756 36669138
    37975 7qh1:A (2.74) BS04 CA 3.4.24.26 GO:0004222 ... P14756 36669138
    37976 7qh1:B (2.74) BS03 CA 3.4.24.26 GO:0004222 ... P14756 36669138
    37977 7qh1:B (2.74) BS04 CA 3.4.24.26 GO:0004222 ... P14756 36669138
    37978 7qh1:C (2.74) BS03 CA 3.4.24.26 GO:0004222 ... P14756 36669138
    37979 7qh1:D (2.74) BS03 CA 3.4.24.26 GO:0004222 ... P14756 36669138
    37980 7qhm:D (2.8) BS05 CA 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    37981 7qhm:Q (2.8) BS04 CA 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    37982 7qho:D (3.1) BS04 CA 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    37983 7qho:Q (3.1) BS04 CA 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    37984 7qp1:A (3.0) BS01 CA 3.4.22.- GO:0004197 ... Q6FPX9 36316540
    37985 7qp1:B (3.0) BS01 CA 3.4.22.- GO:0004197 ... Q6FPX9 36316540
    37986 7qp3:A (1.85) BS02 CA 3.4.24.- GO:0004222 ... A0A1B8GTG7 N/A
    37987 7qp3:A (1.85) BS03 CA 3.4.24.- GO:0004222 ... A0A1B8GTG7 N/A
    37988 7qp3:A (1.85) BS04 CA 3.4.24.- GO:0004222 ... A0A1B8GTG7 N/A
    37989 7qp3:A (1.85) BS05 CA 3.4.24.- GO:0004222 ... A0A1B8GTG7 N/A
    37990 7qp3:A (1.85) BS06 CA 3.4.24.- GO:0004222 ... A0A1B8GTG7 N/A
    37991 7qql:A (2.44) BS02 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    37992 7qql:A (2.44) BS03 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    37993 7qql:A (2.44) BS04 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    37994 7qql:A (2.44) BS05 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    37995 7qql:B (2.44) BS02 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    37996 7qql:B (2.44) BS03 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    37997 7qql:B (2.44) BS04 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    37998 7qql:B (2.44) BS05 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    37999 7qql:B (2.44) BS06 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    38000 7qql:C (2.44) BS02 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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