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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37401 7or0:D (2.64) BS03 CA ? GO:0005216 ... O75762 N/A
    37402 7or1:A (2.64) BS02 CA ? GO:0005216 ... O75762 N/A
    37403 7or1:B (2.64) BS02 CA ? GO:0005216 ... O75762 N/A
    37404 7or1:C (2.64) BS02 CA ? GO:0005216 ... O75762 N/A
    37405 7or1:D (2.64) BS03 CA ? GO:0005216 ... O75762 N/A
    37406 7osk:A (2.65) BS01 CA 3.2.1.89 GO:0015926 ... E0SSW8 34530892
    37407 7osk:B (2.65) BS01 CA 3.2.1.89 GO:0015926 ... E0SSW8 34530892
    37408 7ou8:BBB (1.5) BS02 CA 3.2.1.169 N/A Q89ZI2 N/A
    37409 7oui:A (2.79) BS10 CA 1.10.3.9 GO:0003729 ... P83755 34330992
    37410 7oui:a (2.79) BS11 CA 1.10.3.9 GO:0003729 ... P83755 34330992
    37411 7ovy:A (1.24) BS03 CA 3.4.24.65 GO:0004222 ... P39900 35111280
    37412 7ovy:A (1.24) BS04 CA 3.4.24.65 GO:0004222 ... P39900 35111280
    37413 7ovy:A (1.24) BS05 CA 3.4.24.65 GO:0004222 ... P39900 35111280
    37414 7oz9:AAA (1.907) BS03 CA ? GO:0004065 ... Q8A397 35710619
    37415 7oz9:BBB (1.907) BS03 CA ? GO:0004065 ... Q8A397 35710619
    37416 7oza:AAA (1.5) BS02 CA ? GO:0004065 ... Q8A171 35710619
    37417 7oza:CCC (1.5) BS02 CA ? GO:0004065 ... Q8A171 35710619
    37418 7ozc:AAA (1.75) BS02 CA ? GO:0016787 ... Q8A346 35710619
    37419 7oze:AAA (2.7) BS02 CA ? GO:0016787 ... Q8A7A1 35710619
    37420 7oze:EEE (2.7) BS02 CA ? GO:0016787 ... Q8A7A1 35710619
    37421 7oze:FFF (2.7) BS02 CA ? GO:0016787 ... Q8A7A1 35710619
    37422 7oze:GGG (2.7) BS02 CA ? GO:0016787 ... Q8A7A1 35710619
    37423 7p01:A (2.12) BS08 CA N/A GO:0005975 ... N/A 34682239
    37424 7p01:B (2.12) BS03 CA N/A GO:0005975 ... N/A 34682239
    37425 7p07:A (2.13) BS03 CA N/A GO:0005975 ... N/A 34682239
    37426 7p07:B (2.13) BS03 CA N/A GO:0005975 ... N/A 34682239
    37427 7p0k:AAA (2.2) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 34662125
    37428 7p1d:A (1.69) BS03 CA ? GO:0004308 ... Q0CMX0 34724608
    37429 7p1e:A (1.53) BS03 CA ? GO:0004308 ... Q0CMX0 34724608
    37430 7p1f:A (1.45) BS02 CA ? GO:0004308 ... Q0CMX0 34724608
    37431 7p1f:B (1.45) BS02 CA ? GO:0004308 ... Q0CMX0 34724608
    37432 7p1h:B (3.9) BS01 CA 3.6.4.- GO:0000079 ... P60709 34785651
    37433 7p1v:A (1.47) BS01 CA ? GO:0004308 ... A0A178EUH2 34724608
    37434 7p1v:B (1.47) BS01 CA ? GO:0004308 ... A0A178EUH2 34724608
    37435 7p1v:C (1.47) BS01 CA ? GO:0004308 ... A0A178EUH2 34724608
    37436 7p1v:D (1.47) BS01 CA ? GO:0004308 ... A0A178EUH2 34724608
    37437 7p24:AAA (0.97) BS03 CA ? GO:0016787 ... Q8A2X8 35710619
    37438 7p26:AAA (1.35) BS02 CA ? GO:0016787 ... Q89YV0 35710619
    37439 7p2d:A (3.2) BS01 CA ? GO:0007155 ... P11215 35738398
    37440 7p2d:A (3.2) BS02 CA ? GO:0007155 ... P11215 35738398
    37441 7p38:A (2.7) BS01 CA 2.4.1.5 GO:0009250 ... A0A1Z2RUH3 34708648
    37442 7p38:B (2.7) BS01 CA 2.4.1.5 GO:0009250 ... A0A1Z2RUH3 34708648
    37443 7p39:A (2.9) BS02 CA 2.4.1.5 GO:0009250 ... A0A1Z2RUH3 34708648
    37444 7p39:B (2.9) BS02 CA 2.4.1.5 GO:0009250 ... A0A1Z2RUH3 34708648
    37445 7p3d:B (1.67) BS01 CA ? GO:0000139 ... P61769 35931021
    37446 7p4j:A (1.79) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 36623871
    37447 7p4j:A (1.79) BS06 CA 3.1.4.39 GO:0001953 ... Q64610 36623871
    37448 7p4l:A (2.3) BS01 CA ? N/A C0HM55 35794124
    37449 7p4l:A (2.3) BS02 CA ? N/A C0HM55 35794124
    37450 7p4l:A (2.3) BS03 CA ? N/A C0HM55 35794124
    37451 7p4l:A (2.3) BS04 CA ? N/A C0HM55 35794124
    37452 7p4l:A (2.3) BS05 CA ? N/A C0HM55 35794124
    37453 7p4l:A (2.3) BS06 CA ? N/A C0HM55 35794124
    37454 7p4l:B (2.3) BS01 CA ? N/A C0HM55 35794124
    37455 7p4l:B (2.3) BS02 CA ? N/A C0HM55 35794124
    37456 7p4l:B (2.3) BS03 CA ? N/A C0HM55 35794124
    37457 7p4l:B (2.3) BS04 CA ? N/A C0HM55 35794124
    37458 7p4l:B (2.3) BS05 CA ? N/A C0HM55 35794124
    37459 7p4l:B (2.3) BS06 CA ? N/A C0HM55 35794124
    37460 7p4l:B (2.3) BS07 CA ? N/A C0HM55 35794124
    37461 7p4l:B (2.3) BS08 CA ? N/A C0HM55 35794124
    37462 7p4l:C (2.3) BS01 CA ? N/A C0HM55 35794124
    37463 7p4l:C (2.3) BS02 CA ? N/A C0HM55 35794124
    37464 7p4l:C (2.3) BS03 CA ? N/A C0HM55 35794124
    37465 7p4l:C (2.3) BS04 CA ? N/A C0HM55 35794124
    37466 7p4l:C (2.3) BS05 CA ? N/A C0HM55 35794124
    37467 7p4l:C (2.3) BS06 CA ? N/A C0HM55 35794124
    37468 7p4l:C (2.3) BS07 CA ? N/A C0HM55 35794124
    37469 7p4o:A (1.69) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 36623871
    37470 7p4w:A (2.28) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 35497656
    37471 7p56:A (1.735) BS01 CA ? GO:0042783 ... P26332 36943866
    37472 7p56:B (1.735) BS02 CA ? GO:0042783 ... P26332 36943866
    37473 7p61:G (3.2) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37474 7p62:G (3.6) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37475 7p63:G (3.4) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37476 7p64:G (2.5) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37477 7p69:G (3.0) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37478 7p70:A (2.0) BS02 CA ? GO:0001525 ... P07355
    Q13884    		 36115835
    37479 7p70:A (2.0) BS03 CA ? GO:0001525 ... P07355
    Q13884    		 36115835
    37480 7p70:A (2.0) BS04 CA ? GO:0001525 ... P07355
    Q13884    		 36115835
    37481 7p70:A (2.0) BS05 CA ? GO:0001525 ... P07355
    Q13884    		 36115835
    37482 7p70:A (2.0) BS06 CA ? GO:0001525 ... P07355
    Q13884    		 36115835
    37483 7p71:A (2.6) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 36115835
    37484 7p71:A (2.6) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 36115835
    37485 7p71:A (2.6) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 36115835
    37486 7p71:A (2.6) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 36115835
    37487 7p71:B (2.6) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 36115835
    37488 7p71:B (2.6) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 36115835
    37489 7p71:B (2.6) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 36115835
    37490 7p71:B (2.6) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 36115835
    37491 7p72:A (2.15) BS02 CA ? GO:0001525 ... P07355
    Q96L92    		 36115835
    37492 7p72:A (2.15) BS03 CA ? GO:0001525 ... P07355
    Q96L92    		 36115835
    37493 7p72:A (2.15) BS04 CA ? GO:0001525 ... P07355
    Q96L92    		 36115835
    37494 7p72:A (2.15) BS05 CA ? GO:0001525 ... P07355
    Q96L92    		 36115835
    37495 7p72:A (2.15) BS06 CA ? GO:0001525 ... P07355
    Q96L92    		 36115835
    37496 7p73:A (1.85) BS02 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37497 7p73:A (1.85) BS03 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37498 7p73:A (1.85) BS04 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37499 7p73:A (1.85) BS05 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37500 7p73:A (1.85) BS06 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37501 7p73:A (1.85) BS07 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37502 7p73:A (1.85) BS08 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37503 7p74:A (1.9) BS02 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37504 7p74:A (1.9) BS03 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37505 7p74:A (1.9) BS04 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37506 7p74:A (1.9) BS05 CA ? GO:0001525 ... P07355
    P57105    		 36115835
    37507 7p7c:G (2.4) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37508 7p7e:G (2.7) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37509 7p7j:G (2.7) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37510 7p7k:G (3.1) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37511 7p7l:G (3.0) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37512 7p7m:G (3.2) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    37513 7p8e:A (2.5) BS01 CA 2.7.13.3 GO:0000155 ... G7LCC3 34630499
    37514 7p9n:A (1.55) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37515 7p9r:A (1.41) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37516 7p9t:A (1.79) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37517 7pa4:A (1.45) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37518 7pag:A (4.0) BS01 CA ? GO:0001771 ... P10820 35148176
    37519 7pag:A (4.0) BS02 CA ? GO:0001771 ... P10820 35148176
    37520 7pag:A (4.0) BS03 CA ? GO:0001771 ... P10820 35148176
    37521 7pb5:A (1.28) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37522 7pb7:A (1.8) BS02 CA ? N/A Q9KLD5 N/A
    37523 7pb7:B (1.8) BS02 CA ? N/A Q9KLD5 N/A
    37524 7pba:A (1.42) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37525 7pbb:A (1.47) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37526 7pbw:BA (2.1) BS05 CA ? GO:0005886 ... Q3J145 34699186
    37527 7pbw:BB (2.1) BS05 CA ? GO:0005886 ... Q3J145 34699186
    37528 7pbw:BC (2.1) BS05 CA ? GO:0005886 ... Q3J145 34699186
    37529 7pbw:BD (2.1) BS05 CA ? GO:0005886 ... Q3J145 34699186
    37530 7pbw:BE (2.1) BS05 CA ? GO:0005886 ... Q3J145 34699186
    37531 7pbw:BF (2.1) BS05 CA ? GO:0005886 ... Q3J145 34699186
    37532 7pbw:BG (2.1) BS05 CA ? GO:0005886 ... Q3J145 34699186
    37533 7pbw:BH (2.1) BS05 CA ? GO:0005886 ... Q3J145 34699186
    37534 7pbw:BI (2.1) BS06 CA ? GO:0005886 ... Q3J145 34699186
    37535 7pby:A (1.13) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37536 7pc3:A (1.95) BS02 CA ? GO:0001525 ... P07355
    Q12959    		 35362473
    37537 7pc3:A (1.95) BS03 CA ? GO:0001525 ... P07355
    Q12959    		 35362473
    37538 7pc3:A (1.95) BS04 CA ? GO:0001525 ... P07355
    Q12959    		 35362473
    37539 7pc4:A (2.3) BS02 CA ? GO:0001525 ... P07355
    Q13884    		 35362473
    37540 7pc4:A (2.3) BS03 CA ? GO:0001525 ... P07355
    Q13884    		 35362473
    37541 7pc4:A (2.3) BS04 CA ? GO:0001525 ... P07355
    Q13884    		 35362473
    37542 7pc4:A (2.3) BS05 CA ? GO:0001525 ... P07355
    Q13884    		 35362473
    37543 7pc4:A (2.3) BS06 CA ? GO:0001525 ... P07355
    Q13884    		 35362473
    37544 7pc5:A (1.7) BS02 CA ? GO:0001525 ... P07355
    Q9H5P4    		 35362473
    37545 7pc5:A (1.7) BS03 CA ? GO:0001525 ... P07355
    Q9H5P4    		 35362473
    37546 7pc5:A (1.7) BS04 CA ? GO:0001525 ... P07355
    Q9H5P4    		 35362473
    37547 7pc5:A (1.7) BS05 CA ? GO:0001525 ... P07355
    Q9H5P4    		 35362473
    37548 7pc5:A (1.7) BS06 CA ? GO:0001525 ... P07355
    Q9H5P4    		 35362473
    37549 7pc7:A (2.1) BS02 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37550 7pc7:A (2.1) BS03 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37551 7pc7:A (2.1) BS04 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37552 7pc7:A (2.1) BS05 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37553 7pc7:A (2.1) BS06 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37554 7pc7:A (2.1) BS07 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37555 7pc7:B (2.1) BS02 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37556 7pc7:B (2.1) BS03 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37557 7pc7:B (2.1) BS04 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37558 7pc7:B (2.1) BS05 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37559 7pc7:B (2.1) BS06 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37560 7pc8:A (2.5) BS02 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37561 7pc8:A (2.5) BS03 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37562 7pc8:A (2.5) BS04 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37563 7pc8:A (2.5) BS05 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37564 7pc8:A (2.5) BS06 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37565 7pc8:B (2.5) BS02 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37566 7pc8:B (2.5) BS03 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37567 7pc8:B (2.5) BS04 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    37568 7pc9:A (2.4) BS02 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37569 7pc9:A (2.4) BS03 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37570 7pc9:A (2.4) BS04 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37571 7pc9:A (2.4) BS05 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37572 7pc9:A (2.4) BS06 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37573 7pc9:B (2.4) BS01 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37574 7pc9:B (2.4) BS02 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37575 7pc9:B (2.4) BS03 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37576 7pc9:B (2.4) BS04 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37577 7pc9:B (2.4) BS05 CA ? GO:0001525 ... P07355
    P57105    		 35362473
    37578 7pcb:A (2.0) BS01 CA ? GO:0001525 ... P07355
    Q96L92    		 35362473
    37579 7pcb:A (2.0) BS02 CA ? GO:0001525 ... P07355
    Q96L92    		 35362473
    37580 7pcb:A (2.0) BS03 CA ? GO:0001525 ... P07355
    Q96L92    		 35362473
    37581 7pcb:A (2.0) BS04 CA ? GO:0001525 ... P07355
    Q96L92    		 35362473
    37582 7pcb:A (2.0) BS05 CA ? GO:0001525 ... P07355
    Q96L92    		 35362473
    37583 7pcp:A (1.377) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37584 7pd9:A (1.39) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 34403084
    37585 7peo:A (4.37) BS05 CA ? N/A P35828 34800371
    37586 7peo:A (4.37) BS06 CA ? N/A P35828 34800371
    37587 7pgn:B (2.4) BS03 CA ? N/A Q96QV1 34887403
    37588 7pgx:AAA (1.001) BS01 CA 2.7.11.1 N/A O49003 35552382
    37589 7pgy:AAA (1.09) BS01 CA 2.7.11.1 N/A O49003 35552382
    37590 7ph1:E (1.18) BS01 CA 3.4.21.4 GO:0004175 ... P00760 36409613
    37591 7phw:A (2.793) BS01 CA ? GO:0004308 ... Q8IFM8 35177602
    37592 7phw:B (2.793) BS01 CA N/A N/A N/A 35177602
    37593 7phw:B (2.793) BS02 CA N/A N/A N/A 35177602
    37594 7phw:D (2.793) BS01 CA ? GO:0004308 ... Q8IFM8 35177602
    37595 7phw:E (2.793) BS01 CA N/A N/A N/A 35177602
    37596 7phw:E (2.793) BS02 CA N/A N/A N/A 35177602
    37597 7pi3:F (3.269) BS01 CA N/A N/A N/A 35177602
    37598 7pi3:F (3.269) BS02 CA N/A N/A N/A 35177602
    37599 7pi3:H (3.269) BS01 CA ? GO:0004308 ... Q8IFM8 35177602
    37600 7pi3:M (3.269) BS01 CA N/A N/A N/A 35177602
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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