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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    37201 7nmi:B (2.1) BS07 CA ? GO:0000287 ... P07355
    P25815    		 N/A
    37202 7nmi:B (2.1) BS08 CA ? GO:0000287 ... P07355
    P25815    		 N/A
    37203 7nmi:B (2.1) BS09 CA ? GO:0000287 ... P07355
    P25815    		 N/A
    37204 7nmu:CCC (2.5) BS01 CA N/A N/A N/A 33512486
    37205 7nn9:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... P03472 7549872
    37206 7np8:A (2.3) BS10 CA 1.8.98.3 GO:0016491 ... Q58280 36658338
    37207 7np8:B (2.3) BS10 CA 1.8.98.3 GO:0016491 ... Q58280 36658338
    37208 7np8:C (2.3) BS09 CA 1.8.98.3 GO:0016491 ... Q58280 36658338
    37209 7np8:D (2.3) BS11 CA 1.8.98.3 GO:0016491 ... Q58280 36658338
    37210 7np8:D (2.3) BS12 CA 1.8.98.3 GO:0016491 ... Q58280 36658338
    37211 7npb:A (1.37) BS03 CA ? GO:0000122 ... P31947 35036934
    37212 7npg:A (1.37) BS03 CA ? GO:0000122 ... P31947 35036934
    37213 7nqc:A (-1.00) BS02 CA ? GO:0000086 ... P0DP29 34480001
    37214 7nqc:A (-1.00) BS03 CA ? GO:0000086 ... P0DP29 34480001
    37215 7nqc:A (-1.00) BS04 CA ? GO:0000086 ... P0DP29 34480001
    37216 7nqc:A (-1.00) BS05 CA ? GO:0000086 ... P0DP29 34480001
    37217 7nrk:A (1.75) BS03 CA ? GO:0000122 ... P31947 34047554
    37218 7ns9:A (1.75) BS01 CA ? GO:0005524 ... Q4JAT2 34029589
    37219 7ns9:A (1.75) BS02 CA ? GO:0005524 ... Q4JAT2 34029589
    37220 7nsa:A (1.95) BS01 CA ? GO:0005524 ... Q4JAT2 34029589
    37221 7nsd:A (2.19) BS01 CA ? GO:0005524 ... Q4JAT2 34029589
    37222 7nsd:A (2.19) BS02 CA ? GO:0005524 ... Q4JAT2 34029589
    37223 7nsn:A (2.29) BS01 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37224 7nsn:A (2.29) BS02 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37225 7nsn:A (2.29) BS03 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37226 7nsn:A (2.29) BS04 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37227 7nsn:A (2.29) BS06 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37228 7nsn:B (2.29) BS01 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37229 7nsn:B (2.29) BS02 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37230 7nsn:B (2.29) BS03 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37231 7nsn:B (2.29) BS04 CA 3.2.1.- GO:0005975 ... A0A7R9KAR8 37071393
    37232 7nwn:AAA (1.97) BS01 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37233 7nwn:AAA (1.97) BS02 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37234 7nwn:AAA (1.97) BS03 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37235 7nwo:AAA (2.7) BS02 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37236 7nwo:AAA (2.7) BS03 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37237 7nwo:AAA (2.7) BS04 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37238 7nwp:AAA (2.163) BS02 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37239 7nwp:AAA (2.163) BS03 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37240 7nwp:AAA (2.163) BS04 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37241 7nwq:AAA (2.231) BS02 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37242 7nwq:AAA (2.231) BS03 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37243 7nwq:AAA (2.231) BS04 CA 3.2.1.8 GO:0004553 ... E4S6E9 34180241
    37244 7nxd:A (4.6) BS01 CA ? GO:0001525 ... P08648 33962943
    37245 7nxd:A (4.6) BS02 CA ? GO:0001525 ... P08648 33962943
    37246 7nxd:A (4.6) BS03 CA ? GO:0001525 ... P08648 33962943
    37247 7nxd:A (4.6) BS04 CA ? GO:0001525 ... P08648 33962943
    37248 7nxd:A (4.6) BS05 CA ? GO:0001525 ... P08648 33962943
    37249 7nxd:B (4.6) BS02 CA ? GO:0000082 ... P05556 33962943
    37250 7nxd:B (4.6) BS03 CA ? GO:0000082 ... P05556 33962943
    37251 7nxv:B (2.55) BS01 CA 3.1.21.1 GO:0002283 ... P00639 34625748
    37252 7nxv:B (2.55) BS02 CA 3.1.21.1 GO:0002283 ... P00639 34625748
    37253 7nxv:F (2.55) BS01 CA 3.1.21.1 GO:0002283 ... P00639 34625748
    37254 7nxv:F (2.55) BS02 CA 3.1.21.1 GO:0002283 ... P00639 34625748
    37255 7nyc:D (3.54) BS03 CA ? GO:0005576 ... P07358 34667172
    37256 7nyc:E (3.54) BS04 CA ? GO:0001848 ... P07357 34667172
    37257 7nyc:H (3.54) BS01 CA ? GO:0001906 ... P02748 34667172
    37258 7nyd:D (3.27) BS03 CA ? GO:0005576 ... P07358 34667172
    37259 7nyd:E (3.27) BS02 CA ? GO:0001848 ... P07357 34667172
    37260 7nyd:G (3.27) BS01 CA ? GO:0001906 ... P02748 34667172
    37261 7nyd:H (3.27) BS01 CA ? GO:0001906 ... P02748 34667172
    37262 7nyr:G (3.3) BS05 CA 7.1.1.- GO:0003954 ... P33602 34308841
    37263 7nyu:G (3.8) BS05 CA 7.1.1.- GO:0003954 ... P33602 34308841
    37264 7nyv:G (3.7) BS05 CA 7.1.1.- GO:0003954 ... P33602 34308841
    37265 7nz1:G (2.1) BS05 CA 7.1.1.- GO:0003954 ... P33602 34308841
    37266 7o1u:A (1.7) BS02 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37267 7o1u:A (1.7) BS03 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37268 7o1u:A (1.7) BS04 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37269 7o1w:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37270 7o1w:A (1.8) BS05 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37271 7o1w:A (1.8) BS06 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37272 7o1y:A (1.7) BS04 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37273 7o1y:A (1.7) BS05 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37274 7o1y:A (1.7) BS06 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37275 7o20:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37276 7o20:A (1.8) BS05 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37277 7o20:A (1.8) BS06 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37278 7o22:A (1.8) BS01 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37279 7o22:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37280 7o22:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    37281 7o3u:A (1.8) BS02 CA ? GO:0005509 ... Q27709 34802167
    37282 7o7g:A (1.6) BS11 CA ? N/A Q8EG34 34556577
    37283 7o7g:A (1.6) BS12 CA ? N/A Q8EG34 34556577
    37284 7o7g:A (1.6) BS13 CA ? N/A Q8EG34 34556577
    37285 7o7g:A (1.6) BS14 CA ? N/A Q8EG34 34556577
    37286 7o85:A (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    37287 7o85:A (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    37288 7o85:D (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    37289 7o85:D (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    37290 7o85:G (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    37291 7o85:G (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    37292 7o85:J (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    37293 7o85:J (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    37294 7o85:M (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    37295 7o85:M (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    37296 7o85:P (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    37297 7o85:P (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    37298 7o85:S (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    37299 7o85:S (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    37300 7oa7:A (1.45) BS01 CA ? N/A A0A0B7GRV8 36626560
    37301 7ob0:A (1.9) BS01 CA ? GO:0000166 ... M1E1F8 34146595
    37302 7ob0:B (1.9) BS02 CA ? GO:0000166 ... M1E1F8 34146595
    37303 7ob5:A (1.8) BS02 CA ? GO:0000122 ... P31947 37130519
    37304 7obs:A (1.8) BS02 CA ? GO:0000122 ... P31947 37130519
    37305 7oc7:A (1.95) BS03 CA 3.4.24.26 GO:0004222 ... P14756 34762767
    37306 7od0:AAA (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37307 7od0:AAA (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37308 7od0:BBB (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37309 7od0:BBB (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37310 7od0:CCC (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37311 7od0:CCC (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37312 7od0:CCC (2.1) BS05 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37313 7od0:DDD (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37314 7od0:DDD (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37315 7od0:EEE (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37316 7od0:EEE (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37317 7od0:FFF (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37318 7od0:FFF (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37319 7od0:FFF (2.1) BS05 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    37320 7ofq:A (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37321 7ofq:B (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37322 7ofq:C (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37323 7ofq:D (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37324 7ofq:E (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37325 7ofq:F (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37326 7ofq:G (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37327 7ofq:H (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37328 7ofq:I (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37329 7ofq:J (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37330 7ofq:K (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37331 7ofq:L (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37332 7ofq:M (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37333 7ofq:N (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37334 7ofq:O (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37335 7ofq:P (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37336 7ofq:Q (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37337 7ofq:R (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37338 7ofq:S (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37339 7ofq:T (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37340 7ofq:U (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37341 7ofq:V (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37342 7ofq:W (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37343 7ofq:X (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37344 7ofq:Y (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37345 7ofq:Z (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37346 7ofq:a (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37347 7ofq:b (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37348 7ofq:c (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37349 7ofq:d (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37350 7ofq:e (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37351 7ofq:f (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37352 7ofq:g (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37353 7ofq:h (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37354 7ofq:i (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37355 7ofq:j (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37356 7ofq:k (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37357 7ofq:l (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37358 7ofq:m (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37359 7ofq:n (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37360 7ofq:o (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37361 7ofq:p (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37362 7ofq:q (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37363 7ofq:r (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37364 7ofq:s (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    37365 7og0:A (2.61) BS02 CA ? GO:0015833 ... Q4QL73 34653190
    37366 7og0:B (2.61) BS02 CA ? GO:0015833 ... Q4QL73 34653190
    37367 7ogn:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 35408808
    37368 7ogn:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 35408808
    37369 7oih:A (2.603) BS02 CA 1.11.2.2 GO:0004601 ... P05164 36048150
    37370 7oih:B (2.603) BS02 CA 1.11.2.2 GO:0004601 ... P05164 36048150
    37371 7oih:C (2.603) BS02 CA 1.11.2.2 GO:0004601 ... P05164 36048150
    37372 7oih:D (2.603) BS03 CA 1.11.2.2 GO:0004601 ... P05164 36048150
    37373 7oih:E (2.603) BS01 CA 1.11.2.2 GO:0004601 ... P05164 36048150
    37374 7oih:F (2.603) BS02 CA 1.11.2.2 GO:0004601 ... P05164 36048150
    37375 7oih:G (2.603) BS02 CA 1.11.2.2 GO:0004601 ... P05164 36048150
    37376 7oih:H (2.603) BS02 CA 1.11.2.2 GO:0004601 ... P05164 36048150
    37377 7oj7:111 (1.78) BS01 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... V9VEF3 34445134
    37378 7oj7:111 (1.78) BS02 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... V9VEF3 34445134
    37379 7oj7:444 (1.78) BS01 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0005198 ... V9VEF3 34445134
    37380 7ok6:AAA (1.949) BS02 CA ? N/A A6NIH7 34130453
    37381 7omg:A (2.1) BS07 CA 2.7.7.7
    3.1.-.-    		 GO:0000166 ... P77933 34486208
    37382 7ong:A (1.95) BS01 CA N/A N/A N/A N/A
    37383 7ong:A (1.95) BS02 CA N/A N/A N/A N/A
    37384 7ong:A (1.95) BS03 CA N/A N/A N/A N/A
    37385 7ong:A (1.95) BS04 CA N/A N/A N/A N/A
    37386 7ong:A (1.95) BS05 CA N/A N/A N/A N/A
    37387 7ong:A (1.95) BS06 CA N/A N/A N/A N/A
    37388 7ong:A (1.95) BS07 CA N/A N/A N/A N/A
    37389 7ong:A (1.95) BS08 CA N/A N/A N/A N/A
    37390 7ong:A (1.95) BS09 CA N/A N/A N/A N/A
    37391 7oo5:A (1.85) BS02 CA N/A GO:0004601 ... N/A 34573078
    37392 7oo5:A (1.85) BS03 CA N/A GO:0004601 ... N/A 34573078
    37393 7op2:A (1.59) BS01 CA ? GO:0019028 ... G9G864 34851659
    37394 7op2:D (1.59) BS01 CA ? GO:0019028 ... G9G864 34851659
    37395 7op2:D (1.59) BS02 CA ? GO:0019028 ... G9G864 34851659
    37396 7op2:G (1.59) BS01 CA ? GO:0019028 ... G9G864 34851659
    37397 7oqd:AAA (2.3) BS02 CA ? GO:0016787 ... Q8A789 34616040
    37398 7or0:A (2.64) BS02 CA ? GO:0005216 ... O75762 N/A
    37399 7or0:B (2.64) BS02 CA ? GO:0005216 ... O75762 N/A
    37400 7or0:C (2.64) BS02 CA ? GO:0005216 ... O75762 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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