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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36601 7kb6:D (2.2) BS01 CA ? GO:0001701 ... O08795 34870992
    36602 7kb6:D (2.2) BS02 CA ? GO:0001701 ... O08795 34870992
    36603 7kb8:B (2.385) BS01 CA ? GO:0001701 ... O08795 34870992
    36604 7kb8:B (2.385) BS02 CA ? GO:0001701 ... O08795 34870992
    36605 7kb8:D (2.385) BS01 CA ? GO:0001701 ... O08795 34870992
    36606 7kb8:D (2.385) BS02 CA ? GO:0001701 ... O08795 34870992
    36607 7kbg:A (1.26) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36608 7kbg:A (1.26) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36609 7kbg:B (1.26) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36610 7kbg:B (1.26) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36611 7kbg:C (1.26) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36612 7kbg:C (1.26) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36613 7kbh:A (2.68) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36614 7kbh:A (2.68) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36615 7kbh:B (2.68) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36616 7kbh:B (2.68) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36617 7kbh:C (2.68) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36618 7kbh:C (2.68) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 33335670
    36619 7kbj:B (2.21) BS01 CA ? N/A O08795 34870992
    36620 7kbj:B (2.21) BS02 CA ? N/A O08795 34870992
    36621 7kbj:D (2.21) BS01 CA ? N/A O08795 34870992
    36622 7kbj:D (2.21) BS02 CA ? N/A O08795 34870992
    36623 7kbr:B (2.09) BS01 CA ? N/A O08795 34870992
    36624 7kbr:B (2.09) BS02 CA ? N/A O08795 34870992
    36625 7kbr:D (2.09) BS01 CA ? N/A O08795 34870992
    36626 7kbr:D (2.09) BS02 CA ? N/A O08795 34870992
    36627 7kbt:A (4.15) BS03 CA ? GO:0005507 ... P00451
    P12263    		 N/A
    36628 7kbu:A (2.27) BS01 CA ? GO:0005509 ... Q14515 33535026
    36629 7kbu:A (2.27) BS02 CA ? GO:0005509 ... Q14515 33535026
    36630 7kbu:A (2.27) BS03 CA ? GO:0005509 ... Q14515 33535026
    36631 7kbu:B (2.27) BS01 CA ? GO:0005509 ... Q14515 33535026
    36632 7kbu:B (2.27) BS02 CA ? GO:0005509 ... Q14515 33535026
    36633 7kbu:B (2.27) BS03 CA ? GO:0005509 ... Q14515 33535026
    36634 7kbu:B (2.27) BS04 CA ? GO:0005509 ... Q14515 33535026
    36635 7kev:B (2.8) BS02 CA 3.4.21.- GO:0004252 ... Q8NBP7 34547225
    36636 7kfa:B (2.45) BS02 CA 3.4.21.- GO:0004252 ... Q8NBP7 34547225
    36637 7kgq:B (1.34) BS01 CA ? GO:0000139 ... P61769 33521593
    36638 7kgz:A (2.4) BS01 CA ? GO:0000166 ... A0A395V874 35013263
    36639 7kgz:B (2.4) BS01 CA ? GO:0000166 ... A0A395V874 35013263
    36640 7khv:A (2.3) BS02 CA 3.2.1.169 N/A Q0TR53 33197187
    36641 7khv:D (2.3) BS03 CA 3.2.1.169 N/A Q0TR53 33197187
    36642 7khv:E (2.3) BS02 CA 3.2.1.169 N/A Q0TR53 33197187
    36643 7kii:A (1.3) BS03 CA ? GO:0006260 ... D2JZX8 36541758
    36644 7kii:A (1.3) BS04 CA ? GO:0006260 ... D2JZX8 36541758
    36645 7kio:A (2.4) BS01 CA 3.1.3.57 GO:0004441 ... P21327 33172890
    36646 7kiq:A (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36647 7kiq:B (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36648 7kiq:D (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36649 7kiq:E (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36650 7kiq:F (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36651 7kiq:G (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36652 7kiq:H (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36653 7kiq:I (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36654 7kiq:J (2.523) BS01 CA 3.1.3.4 N/A Q99PI5 34354069
    36655 7kir:A (2.6) BS02 CA 3.1.3.57 GO:0004441 ... P21327 33172890
    36656 7kir:A (2.6) BS03 CA 3.1.3.57 GO:0004441 ... P21327 33172890
    36657 7kl5:A (1.65) BS02 CA ? GO:0000086 ... P0DP23 33754699
    36658 7kl5:A (1.65) BS03 CA ? GO:0000086 ... P0DP23 33754699
    36659 7kl5:A (1.65) BS04 CA ? GO:0000086 ... P0DP23 33754699
    36660 7kl5:A (1.65) BS05 CA ? GO:0000086 ... P0DP23 33754699
    36661 7kl5:A (1.65) BS06 CA ? GO:0000086 ... P0DP23 33754699
    36662 7kld:A (2.25) BS02 CA 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    36663 7kld:A (2.25) BS03 CA 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    36664 7kld:A (2.25) BS04 CA 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    36665 7kld:A (2.25) BS05 CA 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    36666 7kld:B (2.25) BS03 CA 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    36667 7kld:B (2.25) BS04 CA 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    36668 7kld:D (2.25) BS03 CA 3.4.22.- GO:0006508 ... Q2FXS9 35731716
    36669 7kle:A (3.003) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 N/A
    36670 7kle:A (3.003) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 N/A
    36671 7klf:A (2.301) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 N/A
    36672 7klf:A (2.301) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 N/A
    36673 7klf:A (2.301) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 N/A
    36674 7kmq:A (2.045) BS01 CA N/A GO:0004560 ... N/A N/A
    36675 7kmq:B (2.045) BS01 CA N/A GO:0004560 ... N/A N/A
    36676 7knv:A (-1.00) BS01 CA ? GO:0005509 ... Q6ZTQ4 N/A
    36677 7knv:A (-1.00) BS02 CA ? GO:0005509 ... Q6ZTQ4 N/A
    36678 7knv:A (-1.00) BS03 CA ? GO:0005509 ... Q6ZTQ4 N/A
    36679 7koo:A (3.0) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36680 7koo:B (3.0) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36681 7koo:C (3.0) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36682 7koo:D (3.0) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36683 7koo:E (3.0) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36684 7kox:A (2.7) BS02 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36685 7kox:B (2.7) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36686 7kox:C (2.7) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36687 7kox:D (2.7) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36688 7kox:E (2.7) BS03 CA ? GO:0004888 ... P0ABE7
    P36544    		 33735609
    36689 7kpj:E (2.1) BS01 CA ? N/A A0A2N5NGA8 34548394
    36690 7kpj:F (2.1) BS01 CA ? N/A A0A2N5NGA8 34548394
    36691 7kqn:A (2.02) BS04 CA 2.7.7.49 GO:0000781 ... Q0QHL8 34969861
    36692 7kqn:D (2.02) BS05 CA 2.7.7.49 GO:0000781 ... Q0QHL8 34969861
    36693 7kry:B (2.55) BS01 CA ? GO:0001701 ... O08795 34870992
    36694 7kry:B (2.55) BS02 CA ? GO:0001701 ... O08795 34870992
    36695 7kry:D (2.55) BS01 CA ? GO:0001701 ... O08795 34870992
    36696 7kry:D (2.55) BS02 CA ? GO:0001701 ... O08795 34870992
    36697 7ksf:A (2.9) BS01 CA 2.7.7.49
    2.7.7.7
    3.1.26.4    		 GO:0003676 ... A0A1Q1N9V8 34452360
    36698 7kss:A (1.503) BS04 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36699 7kss:A (1.503) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36700 7ksz:A (1.417) BS04 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36701 7ksz:A (1.417) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36702 7kt3:A (1.879) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36703 7kt3:A (1.879) BS06 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36704 7kta:A (1.844) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36705 7kta:A (1.844) BS06 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36706 7ktj:A (1.452) BS04 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36707 7ktj:A (1.452) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36708 7ktj:A (1.452) BS06 CA 2.7.7.7 GO:0003677 ... Q9NP87 33824325
    36709 7kw6:A (1.68) BS07 CA ? GO:0003824 ... Q65JI8 33910709
    36710 7kwo:A (2.9) BS01 CA ? GO:0005507 ... P00451 33569592
    36711 7kwo:V (2.9) BS01 CA ? N/A P01857
    P04275    		 33569592
    36712 7kxr:A (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    36713 7kxr:A (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    36714 7kxr:B (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    36715 7kxr:B (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    36716 7kxr:C (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    36717 7kxr:C (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    36718 7kxr:D (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    36719 7kxr:D (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    36720 7kxr:E (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    36721 7kxr:E (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    36722 7kxr:F (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    36723 7kxr:F (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    36724 7kxr:G (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    36725 7kxr:G (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    36726 7l05:A (2.21) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34315762
    36727 7l05:C (2.21) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34315762
    36728 7l0o:A (2.7) BS01 CA ? N/A P16952 34473090
    36729 7l0o:A (2.7) BS02 CA ? N/A P16952 34473090
    36730 7l0o:B (2.7) BS01 CA ? N/A P16952 34473090
    36731 7l0o:B (2.7) BS02 CA ? N/A P16952 34473090
    36732 7l29:A (2.08) BS03 CA 3.1.4.17 GO:0004114 ... Q14432 34272366
    36733 7l2c:B (3.65) BS01 CA ? N/A P0DTC2 33789084
    36734 7l2c:C (3.65) BS01 CA N/A N/A N/A 33789084
    36735 7l2c:C (3.65) BS02 CA N/A N/A N/A 33789084
    36736 7l2c:D (3.65) BS01 CA N/A N/A N/A 33789084
    36737 7l2c:H (3.65) BS01 CA N/A N/A N/A 33789084
    36738 7l3g:A (1.27) BS01 CA 3.2.1.17 GO:0003796 ... P00720 34667539
    36739 7l61:A (1.35) BS02 CA ? N/A P22897 33545173
    36740 7l62:A (1.55) BS02 CA ? N/A P22897 33545173
    36741 7l63:A (1.65) BS02 CA ? N/A P22897 33545173
    36742 7l64:A (1.35) BS03 CA ? N/A P22897 33545173
    36743 7l64:A (1.35) BS04 CA ? N/A P22897 33545173
    36744 7l65:A (1.35) BS01 CA ? N/A P22897 33545173
    36745 7l66:A (1.75) BS01 CA ? N/A P22897 33545173
    36746 7l67:A (1.2) BS02 CA ? N/A P22897 33545173
    36747 7l68:A (1.4) BS01 CA ? N/A P22897 33545173
    36748 7l68:B (1.4) BS01 CA ? N/A P22897 33545173
    36749 7l6g:A (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    36750 7l6g:B (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    36751 7l6g:C (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    36752 7l6g:D (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    36753 7l6g:E (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    36754 7l6g:F (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    36755 7l8p:A (2.34995) BS01 CA ? GO:0007155 ... P08514 36113427
    36756 7l8p:A (2.34995) BS02 CA ? GO:0007155 ... P08514 36113427
    36757 7l8p:A (2.34995) BS03 CA ? GO:0007155 ... P08514 36113427
    36758 7l8p:A (2.34995) BS04 CA ? GO:0007155 ... P08514 36113427
    36759 7l8p:B (2.34995) BS02 CA ? N/A P05106 36113427
    36760 7l8p:B (2.34995) BS03 CA ? N/A P05106 36113427
    36761 7l8p:C (2.34995) BS01 CA ? GO:0007155 ... P08514 36113427
    36762 7l8p:C (2.34995) BS02 CA ? GO:0007155 ... P08514 36113427
    36763 7l8p:C (2.34995) BS03 CA ? GO:0007155 ... P08514 36113427
    36764 7l8p:C (2.34995) BS04 CA ? GO:0007155 ... P08514 36113427
    36765 7l8p:D (2.34995) BS03 CA ? N/A P05106 36113427
    36766 7l8p:D (2.34995) BS04 CA ? N/A P05106 36113427
    36767 7l8v:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 36395884
    36768 7l8v:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 36395884
    36769 7l9e:B (2.29) BS01 CA ? N/A O08795 34870992
    36770 7l9e:B (2.29) BS02 CA ? N/A O08795 34870992
    36771 7l9e:D (2.29) BS01 CA ? N/A O08795 34870992
    36772 7l9e:D (2.29) BS02 CA ? N/A O08795 34870992
    36773 7l9f:A (1.75) BS02 CA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 33894202
    36774 7l9f:A (1.75) BS03 CA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 33894202
    36775 7l9f:B (1.75) BS02 CA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 33894202
    36776 7l9f:B (1.75) BS03 CA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 33894202
    36777 7l9f:C (1.75) BS02 CA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 33894202
    36778 7l9f:C (1.75) BS03 CA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 33894202
    36779 7l9f:D (1.75) BS02 CA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 33894202
    36780 7l9f:D (1.75) BS03 CA 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 33894202
    36781 7la4:A (3.3) BS01 CA ? GO:0007155 ... P08514 33760023
    36782 7la4:A (3.3) BS02 CA ? GO:0007155 ... P08514 33760023
    36783 7la4:A (3.3) BS03 CA ? GO:0007155 ... P08514 33760023
    36784 7la4:A (3.3) BS04 CA ? GO:0007155 ... P08514 33760023
    36785 7la4:B (3.3) BS02 CA ? N/A P05106 33760023
    36786 7la4:B (3.3) BS03 CA ? N/A P05106 33760023
    36787 7lae:B (2.97) BS04 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36788 7lae:E (2.97) BS04 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36789 7lag:B (2.85) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36790 7lag:E (2.85) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36791 7lag:G (2.85) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36792 7lag:I (2.85) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36793 7lal:B (2.75) BS04 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36794 7lal:E (2.75) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36795 7lan:B (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36796 7lan:E (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36797 7lan:G (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36798 7lan:I (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    36799 7lcp:A (1.9) BS02 CA 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 33895266
    36800 7lcu:A (1.24) BS01 CA 3.4.21.75 GO:0004252 ... P09958 35202587
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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