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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    36201 7emj:D (2.33) BS02 CA ? GO:0000226 ... P02554 36610121
    36202 7en3:A (2.643) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34090207
    36203 7en3:C (2.643) BS03 CA 3.6.5.- GO:0000226 ... Q2XVP4 34090207
    36204 7eq7:A (2.111) BS01 CA ? GO:0001525 ... P07355 N/A
    36205 7eq7:A (2.111) BS02 CA ? GO:0001525 ... P07355 N/A
    36206 7erh:A (1.55) BS02 CA ? N/A P02766 34547896
    36207 7erh:B (1.55) BS01 CA ? N/A P02766 34547896
    36208 7esi:A (1.8) BS04 CA 3.4.24.3 GO:0004222 ... A0A8B3DGT3 35091565
    36209 7esk:A (1.05) BS01 CA N/A N/A N/A 34303708
    36210 7esr:A (1.42) BS01 CA 3.5.3.11 GO:0005737 ... P73270 35264792
    36211 7esr:A (1.42) BS02 CA 3.5.3.11 GO:0005737 ... P73270 35264792
    36212 7est:E (1.8) BS02 CA 3.4.21.36 GO:0004252 ... P00772 2354062
    36213 7esy:B (2.297) BS01 CA N/A N/A N/A 34620712
    36214 7ev1:A (1.38) BS01 CA ? GO:0005509 ... Q12864 34364873
    36215 7ev1:A (1.38) BS02 CA ? GO:0005509 ... Q12864 34364873
    36216 7ev1:A (1.38) BS03 CA ? GO:0005509 ... Q12864 34364873
    36217 7ev1:B (1.38) BS01 CA ? GO:0005509 ... Q12864 34364873
    36218 7ev1:B (1.38) BS02 CA ? GO:0005509 ... Q12864 34364873
    36219 7ev1:B (1.38) BS03 CA ? GO:0005509 ... Q12864 34364873
    36220 7exc:A (2.39) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    36221 7exc:C (2.39) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    36222 7exk:D (2.14) BS02 CA 3.2.1.4 GO:0005576 ... M2RAI8 N/A
    36223 7exk:F (2.14) BS02 CA 3.2.1.4 GO:0005576 ... M2RAI8 N/A
    36224 7exo:A (1.75) BS02 CA ? N/A Q58791 36301308
    36225 7ey3:A (2.04) BS02 CA 3.1.1.3 GO:0004806 ... Q842J9 36752811
    36226 7ey3:B (2.04) BS02 CA 3.1.1.3 GO:0004806 ... Q842J9 36752811
    36227 7ezz:A (2.76) BS01 CA 3.1.1.32
    3.1.1.4    		 GO:0004620 ... P0A232 N/A
    36228 7ezz:B (2.76) BS01 CA 3.1.1.32
    3.1.1.4    		 GO:0004620 ... P0A232 N/A
    36229 7f05:A (2.298) BS01 CA ? GO:0002027 ... O14958 N/A
    36230 7f05:A (2.298) BS02 CA ? GO:0002027 ... O14958 N/A
    36231 7f05:A (2.298) BS03 CA ? GO:0002027 ... O14958 N/A
    36232 7f05:A (2.298) BS04 CA ? GO:0002027 ... O14958 N/A
    36233 7f05:A (2.298) BS05 CA ? GO:0002027 ... O14958 N/A
    36234 7f05:A (2.298) BS06 CA ? GO:0002027 ... O14958 N/A
    36235 7f05:A (2.298) BS07 CA ? GO:0002027 ... O14958 N/A
    36236 7f05:A (2.298) BS08 CA ? GO:0002027 ... O14958 N/A
    36237 7f05:A (2.298) BS09 CA ? GO:0002027 ... O14958 N/A
    36238 7f05:A (2.298) BS10 CA ? GO:0002027 ... O14958 N/A
    36239 7f05:A (2.298) BS11 CA ? GO:0002027 ... O14958 N/A
    36240 7f05:A (2.298) BS12 CA ? GO:0002027 ... O14958 N/A
    36241 7f05:A (2.298) BS13 CA ? GO:0002027 ... O14958 N/A
    36242 7f05:B (2.298) BS01 CA ? GO:0002027 ... O14958 N/A
    36243 7f05:B (2.298) BS02 CA ? GO:0002027 ... O14958 N/A
    36244 7f05:B (2.298) BS03 CA ? GO:0002027 ... O14958 N/A
    36245 7f05:B (2.298) BS04 CA ? GO:0002027 ... O14958 N/A
    36246 7f05:B (2.298) BS05 CA ? GO:0002027 ... O14958 N/A
    36247 7f05:B (2.298) BS06 CA ? GO:0002027 ... O14958 N/A
    36248 7f05:B (2.298) BS07 CA ? GO:0002027 ... O14958 N/A
    36249 7f05:B (2.298) BS08 CA ? GO:0002027 ... O14958 N/A
    36250 7f05:B (2.298) BS09 CA ? GO:0002027 ... O14958 N/A
    36251 7f05:B (2.298) BS10 CA ? GO:0002027 ... O14958 N/A
    36252 7f05:B (2.298) BS11 CA ? GO:0002027 ... O14958 N/A
    36253 7f05:B (2.298) BS12 CA ? GO:0002027 ... O14958 N/A
    36254 7f05:C (2.298) BS01 CA ? GO:0002027 ... O14958 N/A
    36255 7f05:C (2.298) BS02 CA ? GO:0002027 ... O14958 N/A
    36256 7f05:C (2.298) BS03 CA ? GO:0002027 ... O14958 N/A
    36257 7f05:C (2.298) BS04 CA ? GO:0002027 ... O14958 N/A
    36258 7f05:C (2.298) BS05 CA ? GO:0002027 ... O14958 N/A
    36259 7f05:C (2.298) BS06 CA ? GO:0002027 ... O14958 N/A
    36260 7f05:C (2.298) BS07 CA ? GO:0002027 ... O14958 N/A
    36261 7f05:C (2.298) BS08 CA ? GO:0002027 ... O14958 N/A
    36262 7f05:C (2.298) BS09 CA ? GO:0002027 ... O14958 N/A
    36263 7f05:C (2.298) BS10 CA ? GO:0002027 ... O14958 N/A
    36264 7f05:C (2.298) BS11 CA ? GO:0002027 ... O14958 N/A
    36265 7f05:C (2.298) BS12 CA ? GO:0002027 ... O14958 N/A
    36266 7f05:C (2.298) BS13 CA ? GO:0002027 ... O14958 N/A
    36267 7f05:D (2.298) BS01 CA ? GO:0002027 ... O14958 N/A
    36268 7f05:D (2.298) BS02 CA ? GO:0002027 ... O14958 N/A
    36269 7f05:D (2.298) BS03 CA ? GO:0002027 ... O14958 N/A
    36270 7f05:D (2.298) BS04 CA ? GO:0002027 ... O14958 N/A
    36271 7f05:D (2.298) BS05 CA ? GO:0002027 ... O14958 N/A
    36272 7f05:D (2.298) BS06 CA ? GO:0002027 ... O14958 N/A
    36273 7f05:D (2.298) BS07 CA ? GO:0002027 ... O14958 N/A
    36274 7f05:D (2.298) BS08 CA ? GO:0002027 ... O14958 N/A
    36275 7f05:D (2.298) BS09 CA ? GO:0002027 ... O14958 N/A
    36276 7f05:D (2.298) BS10 CA ? GO:0002027 ... O14958 N/A
    36277 7f05:D (2.298) BS11 CA ? GO:0002027 ... O14958 N/A
    36278 7f05:D (2.298) BS12 CA ? GO:0002027 ... O14958 N/A
    36279 7f05:D (2.298) BS13 CA ? GO:0002027 ... O14958 N/A
    36280 7f06:A (1.95) BS02 CA N/A N/A N/A N/A
    36281 7f06:B (1.95) BS01 CA N/A N/A N/A N/A
    36282 7f36:A (3.098) BS04 CA ? GO:0016747 ... Q8ZL98 N/A
    36283 7f36:B (3.098) BS03 CA ? GO:0016747 ... Q8ZL98 N/A
    36284 7f36:D (3.098) BS04 CA ? GO:0016747 ... Q8ZL98 N/A
    36285 7f44:A (2.12) BS02 CA N/A GO:0004318 ... N/A 35276316
    36286 7f4d:R (3.0) BS02 CA ? GO:0004930 ... P0ABE7
    Q01726    		 34453129
    36287 7f4f:R (2.9) BS02 CA ? GO:0004930 ... P0ABE7
    Q01726    		 34453129
    36288 7f4h:R (2.7) BS02 CA ? GO:0004930 ... P0ABE7
    Q01726    		 34453129
    36289 7f4i:R (3.1) BS02 CA ? GO:0004930 ... P0ABE7
    Q01726    		 34453129
    36290 7f4y:A (2.2) BS05 CA 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 34869578
    36291 7f53:R (3.0) BS02 CA ? GO:0002024 ... P32245 34433901
    36292 7f54:R (3.0) BS02 CA ? GO:0002024 ... P32245 34433901
    36293 7f55:R (3.1) BS02 CA ? GO:0002024 ... P32245 34433901
    36294 7f58:R (3.1) BS02 CA ? GO:0002024 ... P32245 34433901
    36295 7f7r:A (1.63) BS02 CA ? GO:0003824 ... Q833V2 34826537
    36296 7f8l:A (1.762) BS01 CA N/A N/A N/A 34975921
    36297 7f8l:B (1.762) BS01 CA N/A N/A N/A 34975921
    36298 7f98:A (1.999) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36299 7f98:A (1.999) BS04 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36300 7f98:B (1.999) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36301 7f98:B (1.999) BS04 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36302 7f99:A (1.979) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36303 7f99:A (1.979) BS04 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36304 7f99:B (1.979) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36305 7f9a:A (1.999) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36306 7f9a:A (1.999) BS04 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36307 7f9a:B (1.999) BS01 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36308 7f9a:B (1.999) BS04 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36309 7f9b:A (1.995) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36310 7f9b:B (1.995) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36311 7f9c:A (2.196) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36312 7f9c:A (2.196) BS04 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36313 7f9c:B (2.196) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36314 7f9d:A (2.497) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36315 7f9d:A (2.497) BS04 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36316 7f9d:A (2.497) BS05 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36317 7f9d:B (2.497) BS03 CA 6.1.1.15
    6.1.1.17    		 GO:0000166 ... P07814 36854028
    36318 7f9g:A (1.331) BS02 CA ? N/A C0HM62 36433967
    36319 7f9g:A (1.331) BS03 CA ? N/A C0HM62 36433967
    36320 7f9g:B (1.331) BS02 CA ? N/A C0HM62 36433967
    36321 7f9g:B (1.331) BS03 CA ? N/A C0HM62 36433967
    36322 7f9j:A (1.1) BS01 CA ? N/A C0HM62 36433967
    36323 7f9j:A (1.1) BS02 CA ? N/A C0HM62 36433967
    36324 7fag:A (1.3) BS01 CA 3.4.21.36 GO:0004252 ... P00772 N/A
    36325 7fbg:A (1.6) BS03 CA 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... Q812W6 N/A
    36326 7fbl:A (1.419) BS02 CA ? N/A C0HM62 36433967
    36327 7fbl:A (1.419) BS03 CA ? N/A C0HM62 36433967
    36328 7fbl:B (1.419) BS01 CA ? N/A C0HM62 36433967
    36329 7fc8:A (2.377) BS01 CA N/A GO:0004318 ... N/A 35276316
    36330 7fcm:A (2.22) BS03 CA N/A GO:0004318 ... N/A 35276316
    36331 7fcm:B (2.22) BS01 CA N/A GO:0004318 ... N/A 35276316
    36332 7fe1:A (1.72) BS03 CA ? GO:0000224 ... Q832K9 35049087
    36333 7fe1:B (1.72) BS03 CA ? GO:0000224 ... Q832K9 35049087
    36334 7fe1:C (1.72) BS03 CA ? GO:0000224 ... Q832K9 35049087
    36335 7fe1:D (1.72) BS03 CA ? GO:0000224 ... Q832K9 35049087
    36336 7fe2:A (1.75) BS03 CA ? GO:0000224 ... Q832K9 35049087
    36337 7fe2:B (1.75) BS03 CA ? GO:0000224 ... Q832K9 35049087
    36338 7fe2:C (1.75) BS03 CA ? GO:0000224 ... Q832K9 35049087
    36339 7fe2:D (1.75) BS03 CA ? GO:0000224 ... Q832K9 35049087
    36340 7fff:D (3.0) BS01 CA ? N/A Q86YD5 34646021
    36341 7fff:E (3.0) BS01 CA ? N/A Q86YD5 34646021
    36342 7fff:H (3.0) BS01 CA ? N/A Q86YD5 34646021
    36343 7fff:M (3.0) BS01 CA ? N/A Q86YD5 34646021
    36344 7ffl:D (3.1) BS01 CA ? N/A Q86YD5 34646021
    36345 7ffl:E (3.1) BS01 CA ? N/A Q86YD5 34646021
    36346 7ffl:H (3.1) BS01 CA ? N/A Q86YD5 34646021
    36347 7ffn:M (3.0) BS01 CA ? N/A Q86YD5 34646021
    36348 7ffp:A (1.8) BS02 CA 3.4.13.21 GO:0005737 ... Q91642 34431561
    36349 7fgb:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... A0A2P1GNT2 36191180
    36350 7fgb:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... A0A2P1GNT2 36191180
    36351 7fgc:A (1.9) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNT2 36191180
    36352 7fgc:B (1.9) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNT2 36191180
    36353 7fgd:A (2.1) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNT2 36191180
    36354 7fgd:B (2.1) BS02 CA 3.2.1.18 GO:0004308 ... A0A2P1GNT2 36191180
    36355 7fge:A (2.8) BS02 CA N/A GO:0004308 ... N/A 36191180
    36356 7fge:B (2.8) BS02 CA N/A GO:0004308 ... N/A 36191180
    36357 7fge:C (2.8) BS02 CA N/A GO:0004308 ... N/A 36191180
    36358 7fge:D (2.8) BS02 CA N/A GO:0004308 ... N/A 36191180
    36359 7fge:E (2.8) BS02 CA N/A GO:0004308 ... N/A 36191180
    36360 7fge:F (2.8) BS02 CA N/A GO:0004308 ... N/A 36191180
    36361 7fge:G (2.8) BS02 CA N/A GO:0004308 ... N/A 36191180
    36362 7fge:H (2.8) BS02 CA N/A GO:0004308 ... N/A 36191180
    36363 7fgz:A (2.2) BS01 CA N/A GO:0004553 ... N/A N/A
    36364 7fh6:A (1.55) BS02 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36365 7fh6:A (1.55) BS03 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36366 7fh6:A (1.55) BS04 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36367 7fh6:A (1.55) BS05 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36368 7fh6:A (1.55) BS06 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36369 7fh6:A (1.55) BS07 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36370 7fh6:A (1.55) BS08 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36371 7fh6:A (1.55) BS09 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36372 7fh6:A (1.55) BS10 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36373 7fh6:A (1.55) BS11 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36374 7fh6:A (1.55) BS12 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36375 7fh6:A (1.55) BS13 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36376 7fh7:A (1.42) BS04 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36377 7fh7:A (1.42) BS05 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36378 7fh7:A (1.42) BS06 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36379 7fh7:A (1.42) BS07 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36380 7fh7:A (1.42) BS08 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36381 7fh7:A (1.42) BS09 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36382 7fh7:A (1.42) BS10 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36383 7fh7:A (1.42) BS11 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36384 7fh7:A (1.42) BS12 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36385 7fh7:A (1.42) BS13 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36386 7fh7:A (1.42) BS14 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36387 7fh7:A (1.42) BS15 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36388 7fh8:A (1.32) BS03 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36389 7fh8:A (1.32) BS04 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36390 7fh8:A (1.32) BS05 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36391 7fh8:A (1.32) BS06 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36392 7fh8:A (1.32) BS07 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36393 7fh8:A (1.32) BS08 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36394 7fh8:A (1.32) BS09 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36395 7fh8:A (1.32) BS10 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36396 7fh8:A (1.32) BS11 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36397 7fh8:A (1.32) BS12 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36398 7fh8:A (1.32) BS13 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36399 7fh8:A (1.32) BS14 CA ? GO:0046872 ... A0A1Y0K711 N/A
    36400 7fhk:A (3.3) BS02 CA ? GO:0000325 ... P42212
    Q94KI8    		 34845029
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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