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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    35601 7bwu:D (1.87) BS01 CA 3.2.1.18 GO:0004308 ... I7EFR1 N/A
    35602 7byd:B (2.80003) BS01 CA ? GO:0006955 ... Q6V7J5 32720986
    35603 7bys:A (1.4) BS01 CA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    35604 7bys:B (1.4) BS01 CA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    35605 7byt:A (1.5) BS01 CA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    35606 7byv:A (2.5) BS04 CA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    35607 7byx:A (2.3) BS03 CA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    35608 7byx:B (2.3) BS03 CA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    35609 7byx:C (2.3) BS03 CA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    35610 7byx:D (2.3) BS03 CA 3.2.1.145 GO:0004553 ... Q50KB2 33093171
    35611 7bz0:A (1.8) BS07 CA N/A N/A N/A 33645537
    35612 7bzz:A (2.501) BS01 CA ? GO:0016020 ... Q8K299 32907880
    35613 7bzz:A (2.501) BS02 CA ? GO:0016020 ... Q8K299 32907880
    35614 7bzz:A (2.501) BS03 CA ? GO:0016020 ... Q8K299 32907880
    35615 7bzz:D (2.501) BS01 CA ? GO:0016020 ... Q8K299 32907880
    35616 7bzz:D (2.501) BS02 CA ? GO:0016020 ... Q8K299 32907880
    35617 7bzz:D (2.501) BS03 CA ? GO:0016020 ... Q8K299 32907880
    35618 7c00:A (1.7) BS01 CA ? GO:0016020 ... Q6ZMJ2 32907880
    35619 7c00:A (1.7) BS02 CA ? GO:0016020 ... Q6ZMJ2 32907880
    35620 7c00:A (1.7) BS03 CA ? GO:0016020 ... Q6ZMJ2 32907880
    35621 7c0p:A (2.15) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32966481
    35622 7c23:A (1.9) BS01 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    35623 7c23:A (1.9) BS02 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    35624 7c23:A (1.9) BS03 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    35625 7c29:A (2.18) BS01 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    35626 7c29:B (2.18) BS01 CA ? GO:0004622 ... A0A1Z1F9L9 32549911
    35627 7c2g:G (1.71) BS01 CA ? GO:0005546 ... A0A135VHY8 N/A
    35628 7c2g:G (1.71) BS02 CA ? GO:0005546 ... A0A135VHY8 N/A
    35629 7c2g:G (1.71) BS03 CA ? GO:0005546 ... A0A135VHY8 N/A
    35630 7c2g:G (1.71) BS04 CA ? GO:0005546 ... A0A135VHY8 N/A
    35631 7c2g:G (1.71) BS05 CA ? GO:0005546 ... A0A135VHY8 N/A
    35632 7c2h:G (2.352) BS01 CA ? GO:0005546 ... A0A135VDL7 N/A
    35633 7c2h:G (2.352) BS02 CA ? GO:0005546 ... A0A135VDL7 N/A
    35634 7c2h:G (2.352) BS03 CA ? GO:0005546 ... A0A135VDL7 N/A
    35635 7c2h:G (2.352) BS04 CA ? GO:0005546 ... A0A135VDL7 N/A
    35636 7c45:A (1.769) BS04 CA ? GO:0003676 ... Q38DE2 33332555
    35637 7c52:1 (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    35638 7c52:3 (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    35639 7c52:5 (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    35640 7c52:7 (2.89) BS05 CA ? GO:0005515 ... D2Z0P2 33597527
    35641 7c52:9 (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    35642 7c52:A (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    35643 7c52:C (2.89) BS05 CA ? GO:0005506 ... D2Z0P5 33597527
    35644 7c52:D (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    35645 7c52:F (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    35646 7c52:I (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    35647 7c52:K (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    35648 7c52:O (2.89) BS03 CA ? GO:0005515 ... D2Z0P2 33597527
    35649 7c52:Q (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    35650 7c52:S (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    35651 7c52:U (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    35652 7c52:W (2.89) BS04 CA ? GO:0005515 ... D2Z0P2 33597527
    35653 7c52:Y (2.89) BS02 CA ? GO:0005515 ... D2Z0P2 33597527
    35654 7c53:E (2.278) BS01 CA ? GO:0016020 ... P0DTC2 34326308
    35655 7c73:A (2.7) BS02 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    35656 7c73:A (2.7) BS03 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    35657 7c74:A (2.73) BS01 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    35658 7c75:A (2.7) BS01 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    35659 7c7d:A (1.16) BS01 CA 3.2.1.59 N/A A0A7G1KW31 33041007
    35660 7c7d:B (1.16) BS01 CA 3.2.1.59 N/A A0A7G1KW31 33041007
    35661 7c7i:A (2.28) BS02 CA 3.6.5.2 GO:0003924 ... P61224 N/A
    35662 7c7i:B (2.28) BS01 CA 3.6.5.2 GO:0003924 ... P61224 N/A
    35663 7c7j:A (2.39) BS02 CA 3.6.5.2 GO:0003924 ... P61224 N/A
    35664 7c7j:B (2.39) BS01 CA 3.6.5.2 GO:0003924 ... P61224 N/A
    35665 7c7r:A (3.07) BS01 CA ? GO:0005509 ... Q79LN3 34046916
    35666 7c7r:A (3.07) BS02 CA ? GO:0005509 ... Q79LN3 34046916
    35667 7c7r:A (3.07) BS03 CA ? GO:0005509 ... Q79LN3 34046916
    35668 7c7r:A (3.07) BS04 CA ? GO:0005509 ... Q79LN3 34046916
    35669 7c7r:A (3.07) BS05 CA ? GO:0005509 ... Q79LN3 34046916
    35670 7c7r:B (3.07) BS01 CA ? GO:0005509 ... Q79LN3 34046916
    35671 7c7r:B (3.07) BS02 CA ? GO:0005509 ... Q79LN3 34046916
    35672 7c7r:B (3.07) BS03 CA ? GO:0005509 ... Q79LN3 34046916
    35673 7c7r:B (3.07) BS04 CA ? GO:0005509 ... Q79LN3 34046916
    35674 7c7r:B (3.07) BS05 CA ? GO:0005509 ... Q79LN3 34046916
    35675 7c7u:A (1.93) BS01 CA ? N/A Q79LN3 34046916
    35676 7c7u:A (1.93) BS02 CA ? N/A Q79LN3 34046916
    35677 7c7u:A (1.93) BS03 CA ? N/A Q79LN3 34046916
    35678 7c7u:A (1.93) BS04 CA ? N/A Q79LN3 34046916
    35679 7c7u:A (1.93) BS05 CA ? N/A Q79LN3 34046916
    35680 7c7u:B (1.93) BS01 CA ? N/A Q79LN3 34046916
    35681 7c7u:B (1.93) BS02 CA ? N/A Q79LN3 34046916
    35682 7c7u:B (1.93) BS03 CA ? N/A Q79LN3 34046916
    35683 7c7u:B (1.93) BS04 CA ? N/A Q79LN3 34046916
    35684 7c7u:B (1.93) BS05 CA ? N/A Q79LN3 34046916
    35685 7c8h:A (2.5) BS02 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35686 7c8h:B (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35687 7c8h:C (2.5) BS02 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35688 7c8h:D (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35689 7c8h:E (2.5) BS02 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35690 7c8h:F (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35691 7c8h:G (2.5) BS02 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35692 7c8h:H (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35693 7c8i:A (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35694 7c8i:B (2.5) BS04 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35695 7c8i:C (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35696 7c8i:D (2.5) BS04 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35697 7c8i:E (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35698 7c8i:F (2.5) BS04 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35699 7c8i:G (2.5) BS03 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35700 7c8i:H (2.5) BS04 CA 4.1.2.22 GO:0000287 ... Q6R2Q7 36974963
    35701 7c90:A (2.13) BS02 CA ? GO:0005506 ... F5SWR8 32627749
    35702 7c90:B (2.13) BS02 CA ? GO:0005506 ... F5SWR8 32627749
    35703 7c90:C (2.13) BS02 CA ? GO:0005506 ... F5SWR8 32627749
    35704 7c90:D (2.13) BS02 CA ? GO:0005506 ... F5SWR8 32627749
    35705 7c98:B (3.47) BS03 CA ? GO:0000150 ... Q14565 33446654
    35706 7c99:A (3.36) BS03 CA ? GO:0000150 ... Q14565 33446654
    35707 7c99:B (3.36) BS03 CA ? GO:0000150 ... Q14565 33446654
    35708 7c99:C (3.36) BS04 CA ? GO:0000150 ... Q14565 33446654
    35709 7c9b:A (1.4) BS01 CA 3.4.13.21 GO:0005737 ... Q91642 34431561
    35710 7c9c:A (3.33) BS02 CA ? GO:0000150 ... Q14565 33446654
    35711 7c9c:B (3.33) BS03 CA ? GO:0000150 ... Q14565 33446654
    35712 7c9c:C (3.33) BS03 CA ? GO:0000150 ... Q14565 33446654
    35713 7c9k:A (2.75) BS01 CA 2.5.1.152 GO:0016740 ... A0A0H3JXA8 33826776
    35714 7c9r:1 (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    35715 7c9r:3 (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    35716 7c9r:5 (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    35717 7c9r:7 (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    35718 7c9r:9 (2.82) BS02 CA ? GO:0005886 ... G1BIZ0 33009385
    35719 7c9r:A (2.82) BS02 CA ? GO:0005886 ... G1BIY5 33009385
    35720 7c9r:C (2.82) BS06 CA ? GO:0005506 ... H8Z3S2 33009385
    35721 7c9r:D (2.82) BS01 CA ? GO:0005886 ... G1BIY5 33009385
    35722 7c9r:F (2.82) BS01 CA ? GO:0005886 ... G1BIY5 33009385
    35723 7c9r:I (2.82) BS02 CA ? GO:0005886 ... G1BIY5 33009385
    35724 7c9r:K (2.82) BS01 CA ? GO:0005886 ... G1BIY5 33009385
    35725 7c9r:O (2.82) BS01 CA ? GO:0005886 ... G1BIY5 33009385
    35726 7c9r:Q (2.82) BS02 CA ? GO:0005886 ... H8Z3S4 33009385
    35727 7c9r:S (2.82) BS02 CA ? GO:0005886 ... H8Z3R9 33009385
    35728 7c9r:U (2.82) BS02 CA ? GO:0005886 ... H8Z3R9 33009385
    35729 7c9r:W (2.82) BS02 CA ? GO:0005886 ... H8Z3R9 33009385
    35730 7c9r:Y (2.82) BS01 CA ? GO:0005886 ... H8Z3R9 33009385
    35731 7cba:A (2.901) BS03 CA 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    35732 7cba:B (2.901) BS03 CA 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    35733 7cbz:A (2.61) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34081857
    35734 7cbz:C (2.61) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34081857
    35735 7cda:A (2.659) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 35762925
    35736 7cda:C (2.659) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 35762925
    35737 7cdl:A (1.85) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35738 7cdl:B (1.85) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35739 7cdl:C (1.85) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35740 7cdl:D (1.85) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35741 7cdl:G (1.85) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35742 7cdl:H (1.85) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35743 7cdl:M (1.85) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35744 7cdl:N (1.85) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35745 7cdy:A (1.329) BS01 CA N/A N/A N/A N/A
    35746 7cdy:B (1.329) BS01 CA N/A N/A N/A N/A
    35747 7ce5:A (1.8) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35748 7ce5:B (1.8) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35749 7ce5:C (1.8) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35750 7ce5:D (1.8) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35751 7ce5:G (1.8) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35752 7ce5:H (1.8) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35753 7ce5:M (1.8) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35754 7ce5:N (1.8) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35755 7ce6:A (2.695) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 35762925
    35756 7ce6:C (2.695) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 35762925
    35757 7ce8:A (2.725) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 35762925
    35758 7ce8:C (2.725) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 35762925
    35759 7ce9:A (2.2) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35760 7ce9:B (2.2) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35761 7ce9:C (2.2) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35762 7ce9:D (2.2) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35763 7ce9:G (2.2) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35764 7ce9:H (2.2) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35765 7ce9:M (2.2) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35766 7ce9:N (2.2) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35767 7ceb:A (2.89) BS01 CA ? GO:0007155 ... P23229 34188035
    35768 7ceb:A (2.89) BS02 CA ? GO:0007155 ... P23229 34188035
    35769 7ceb:A (2.89) BS03 CA ? GO:0007155 ... P23229 34188035
    35770 7ceb:B (2.89) BS01 CA ? N/A P05556 34188035
    35771 7cec:A (3.9) BS01 CA ? GO:0007155 ... P23229 34188035
    35772 7cec:A (3.9) BS02 CA ? GO:0007155 ... P23229 34188035
    35773 7cec:A (3.9) BS03 CA ? GO:0007155 ... P23229 34188035
    35774 7cec:C (3.9) BS01 CA ? GO:0007155 ... O15230 34188035
    35775 7cef:A (1.6) BS01 CA 3.1.1.74 N/A W0TJ64 32882044
    35776 7ceh:A (1.09) BS01 CA 3.1.1.74 N/A W0TJ64 32882044
    35777 7ceh:A (1.09) BS02 CA 3.1.1.74 N/A W0TJ64 32882044
    35778 7cek:A (2.696) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 35762925
    35779 7cek:C (2.696) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 35762925
    35780 7cek:D (2.696) BS01 CA ? GO:0000226 ... P02554 35762925
    35781 7cf9:A (4.7) BS01 CA ? GO:0003151 ... P11716 32807966
    35782 7cf9:C (4.7) BS01 CA ? GO:0003151 ... P11716 32807966
    35783 7cf9:E (4.7) BS01 CA ? GO:0003151 ... P11716 32807966
    35784 7cf9:G (4.7) BS01 CA ? GO:0003151 ... P11716 32807966
    35785 7cfw:A (1.31) BS01 CA 2.7.13.3 GO:0000160 ... Q9I3B1 32939285
    35786 7cfx:A (2.5) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35787 7cfx:B (2.5) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35788 7cfx:C (2.5) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35789 7cfx:D (2.5) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35790 7cfx:G (2.5) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35791 7cfx:H (2.5) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35792 7cfx:M (2.5) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35793 7cfx:N (2.5) BS01 CA ? GO:0005509 ... Q60AR6 33629832
    35794 7cgt:A (3.0) BS01 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    35795 7cgt:A (3.0) BS02 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    35796 7cgy:C (3.2) BS03 CA ? GO:0000150 ... Q14565 33446654
    35797 7cgz:A (1.94) BS01 CA N/A N/A N/A N/A
    35798 7cgz:B (1.94) BS01 CA N/A N/A N/A N/A
    35799 7cji:C (2.35) BS15 CA ? GO:0005737 ... D0VWR7 33953929
    35800 7cji:O (2.35) BS01 CA ? GO:0009523 ... D0VWR2 33953929
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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