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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    35401 7aqp:A (2.6) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35402 7aru:A (2.05) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35403 7aru:A (2.05) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35404 7aru:A (2.05) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35405 7aru:A (2.05) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35406 7aru:A (2.05) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35407 7ate:A (2.4) BS05 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    35408 7atj:A (1.47) BS01 CA 1.11.1.7 GO:0004601 ... P00433 10574977
    35409 7atj:A (1.47) BS02 CA 1.11.1.7 GO:0004601 ... P00433 10574977
    35410 7atn:A (2.66) BS04 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    35411 7atp:A (2.1) BS01 CA ? GO:0008289 ... Q9SKR2 34408000
    35412 7atp:A (2.1) BS02 CA ? GO:0008289 ... Q9SKR2 34408000
    35413 7au3:A (2.56) BS05 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    35414 7au5:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 34159741
    35415 7au5:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 34159741
    35416 7au6:A (2.4) BS04 CA 7.1.1.9 GO:0004129 ... P98002 N/A
    35417 7auc:A (1.53) BS04 CA 5.6.2.4 GO:0000166 ... P54132 33647232
    35418 7aue:R (2.97) BS02 CA ? GO:0002024 ... P32245 33858992
    35419 7aug:A (2.04) BS01 CA ? GO:0000086 ... P0DP23 34845372
    35420 7aug:A (2.04) BS02 CA ? GO:0000086 ... P0DP23 34845372
    35421 7aug:A (2.04) BS03 CA ? GO:0000086 ... P0DP23 34845372
    35422 7aug:A (2.04) BS04 CA ? GO:0000086 ... P0DP23 34845372
    35423 7aug:A (2.04) BS05 CA ? GO:0000086 ... P0DP23 34845372
    35424 7aug:A (2.04) BS06 CA ? GO:0000086 ... P0DP23 34845372
    35425 7aug:A (2.04) BS07 CA ? GO:0000086 ... P0DP23 34845372
    35426 7aug:A (2.04) BS08 CA ? GO:0000086 ... P0DP23 34845372
    35427 7auq:A (2.25) BS02 CA 3.6.1.10
    3.6.1.52
    3.6.1.60    		 GO:0000298 ... Q99321 33893105
    35428 7ax4:A (2.12) BS02 CA 2.7.10.2 GO:0004672 ... P29597 33783261
    35429 7ax4:B (2.12) BS02 CA 2.7.10.2 GO:0004672 ... P29597 33783261
    35430 7axn:A (1.4) BS03 CA ? GO:0000122 ... P31947 34047554
    35431 7ay3:A (2.00002) BS01 CA 3.2.1.8 GO:0030246 ... A0A140HJ20 35657930
    35432 7ay3:A (2.00002) BS02 CA 3.2.1.8 GO:0030246 ... A0A140HJ20 35657930
    35433 7ayf:A (1.752) BS03 CA ? GO:0000122 ... P31947 34047554
    35434 7ays:A (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 33399553
    35435 7az1:A (1.15) BS03 CA ? GO:0000122 ... P31947 34047554
    35436 7az1:A (1.15) BS04 CA ? GO:0000122 ... P31947 34047554
    35437 7az2:A (1.081) BS03 CA ? GO:0000122 ... P31947 34047554
    35438 7b04:C (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    35439 7b04:C (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35440 7b04:F (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    35441 7b04:F (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35442 7b04:I (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    35443 7b04:I (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35444 7b04:L (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    35445 7b04:L (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35446 7b04:O (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    35447 7b04:O (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35448 7b04:R (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    35449 7b04:R (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35450 7b04:U (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    35451 7b04:U (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35452 7b04:X (2.97) BS02 CA ? GO:0020037 ... Q1PZD4 N/A
    35453 7b04:X (2.97) BS03 CA ? GO:0020037 ... Q1PZD4 N/A
    35454 7b05:A (3.8) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35455 7b05:B (3.8) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35456 7b05:C (3.8) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35457 7b05:D (3.8) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    35458 7b07:A (3.099) BS01 CA 2.7.7.7 GO:0000166 ... P56689 33302546
    35459 7b07:A (3.099) BS02 CA 2.7.7.7 GO:0000166 ... P56689 33302546
    35460 7b0e:A (1.4) BS02 CA ? GO:0000166 ... Q9A5E6 N/A
    35461 7b0e:A (1.4) BS03 CA ? GO:0000166 ... Q9A5E6 N/A
    35462 7b0j:A (2.85) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    35463 7b0j:B (2.85) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    35464 7b0j:C (2.85) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    35465 7b0j:D (2.85) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    35466 7b0s:A (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35467 7b0s:B (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35468 7b0s:C (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35469 7b0s:D (3.6) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    35470 7b16:A (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35471 7b16:B (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35472 7b16:C (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35473 7b16:D (3.15) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35474 7b1g:A (3.6) BS01 CA ? GO:0005216 ... U3N7D8 33236980
    35475 7b1g:B (3.6) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    35476 7b1g:C (3.6) BS02 CA ? GO:0005216 ... U3N7D8 33236980
    35477 7b1g:D (3.6) BS03 CA ? GO:0005216 ... U3N7D8 33236980
    35478 7b1k:A (2.2) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    35479 7b1k:B (2.2) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    35480 7b1l:A (1.85) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    35481 7b1l:B (1.85) BS03 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    35482 7b1n:A (2.8) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    35483 7b1n:B (2.8) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    35484 7b4w:A (1.9) BS02 CA N/A N/A N/A 34795280
    35485 7b4w:A (1.9) BS03 CA N/A N/A N/A 34795280
    35486 7b5c:A (3.7) BS01 CA ? GO:0005229 ... Q8BHY3 33542223
    35487 7b5c:A (3.7) BS02 CA ? GO:0005229 ... Q8BHY3 33542223
    35488 7b5c:B (3.7) BS01 CA ? GO:0005229 ... Q8BHY3 33542223
    35489 7b5c:B (3.7) BS02 CA ? GO:0005229 ... Q8BHY3 33542223
    35490 7b5e:A (4.1) BS01 CA ? GO:0005229 ... Q8BHY3 33542223
    35491 7b5e:A (4.1) BS02 CA ? GO:0005229 ... Q8BHY3 33542223
    35492 7b5e:B (4.1) BS01 CA ? GO:0005229 ... Q8BHY3 33542223
    35493 7b5e:B (4.1) BS02 CA ? GO:0005229 ... Q8BHY3 33542223
    35494 7b6a:AAA (1.44) BS01 CA ? GO:0005198 ... P03088 35974998
    35495 7b6a:AAA (1.44) BS02 CA ? GO:0005198 ... P03088 35974998
    35496 7b6a:AAA (1.44) BS03 CA ? GO:0005198 ... P03088 35974998
    35497 7b6a:BBB (1.44) BS01 CA ? GO:0005198 ... P03088 35974998
    35498 7b6a:CCC (1.44) BS01 CA ? GO:0005198 ... P03088 35974998
    35499 7b6a:EEE (1.44) BS01 CA ? GO:0005198 ... P03088 35974998
    35500 7b6a:EEE (1.44) BS02 CA ? GO:0005198 ... P03088 35974998
    35501 7b6a:EEE (1.44) BS03 CA ? GO:0005198 ... P03088 35974998
    35502 7b6c:DDD (2.484) BS01 CA ? GO:0005198 ... P03088 35974998
    35503 7b6c:EEE (2.484) BS01 CA ? GO:0005198 ... P03088 35974998
    35504 7b6c:III (2.484) BS01 CA ? GO:0005198 ... P03088 35974998
    35505 7b6c:JJJ (2.484) BS01 CA ? GO:0005198 ... P03088 35974998
    35506 7b8e:A (2.23) BS01 CA 3.1.1.7 GO:0001507 ... P04058 33686648
    35507 7bag:A (2.0) BS02 CA ? GO:0004866 ... P01024 36127336
    35508 7bam:A (3.5) BS01 CA ? N/A Q6N022 35099835
    35509 7bam:A (3.5) BS02 CA ? N/A Q6N022 35099835
    35510 7bam:A (3.5) BS03 CA ? N/A Q6N022 35099835
    35511 7bam:B (3.5) BS01 CA ? N/A Q6N022 35099835
    35512 7bam:B (3.5) BS02 CA ? N/A Q6N022 35099835
    35513 7bam:B (3.5) BS03 CA ? N/A Q6N022 35099835
    35514 7ban:A (2.7) BS01 CA ? N/A Q6N022 35099835
    35515 7ban:A (2.7) BS02 CA ? N/A Q6N022 35099835
    35516 7ban:A (2.7) BS03 CA ? N/A Q6N022 35099835
    35517 7ban:B (2.7) BS01 CA ? N/A Q6N022 35099835
    35518 7ban:B (2.7) BS02 CA ? N/A Q6N022 35099835
    35519 7ban:B (2.7) BS03 CA ? N/A Q6N022 35099835
    35520 7bao:A (2.7) BS01 CA ? N/A Q6N022 35099835
    35521 7bao:A (2.7) BS02 CA ? N/A Q6N022 35099835
    35522 7bao:A (2.7) BS03 CA ? N/A Q6N022 35099835
    35523 7bb8:A (1.506) BS02 CA ? GO:0006508 ... A0A292DHH8 N/A
    35524 7bb8:A (1.506) BS03 CA ? GO:0006508 ... A0A292DHH8 N/A
    35525 7bb8:A (1.506) BS04 CA ? GO:0006508 ... A0A292DHH8 N/A
    35526 7bb8:B (1.506) BS02 CA ? GO:0006508 ... A0A292DHH8 N/A
    35527 7bb8:B (1.506) BS03 CA ? GO:0006508 ... A0A292DHH8 N/A
    35528 7bb8:B (1.506) BS04 CA ? GO:0006508 ... A0A292DHH8 N/A
    35529 7bb9:A (1.97) BS01 CA ? GO:0006508 ... A0A292DHH8 N/A
    35530 7bb9:A (1.97) BS02 CA ? GO:0006508 ... A0A292DHH8 N/A
    35531 7bb9:A (1.97) BS03 CA ? GO:0006508 ... A0A292DHH8 N/A
    35532 7bbo:AAA (1.32) BS01 CA ? N/A Q8WWQ0 N/A
    35533 7bbv:A (1.2) BS01 CA ? GO:0000272 ... G2X3Y1 36639075
    35534 7bbv:B (1.2) BS01 CA ? GO:0000272 ... G2X3Y1 36639075
    35535 7bf1:AAA (1.24) BS03 CA ? GO:0000086 ... P0DP23 34235492
    35536 7bf1:AAA (1.24) BS04 CA ? GO:0000086 ... P0DP23 34235492
    35537 7bf1:AAA (1.24) BS05 CA ? GO:0000086 ... P0DP23 34235492
    35538 7bf1:AAA (1.24) BS06 CA ? GO:0000086 ... P0DP23 34235492
    35539 7bf2:AAA (1.43) BS03 CA ? GO:0000086 ... P0DP23 34235492
    35540 7bf2:AAA (1.43) BS04 CA ? GO:0000086 ... P0DP23 34235492
    35541 7bf2:AAA (1.43) BS05 CA ? GO:0000086 ... P0DP23 34235492
    35542 7bf2:AAA (1.43) BS06 CA ? GO:0000086 ... P0DP23 34235492
    35543 7bfz:A (1.73) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 34526506
    35544 7bg3:A (1.4) BS03 CA ? GO:0000122 ... P31947 34047554
    35545 7bgi:B (2.54) BS50 CA 1.97.1.12 GO:0000287 ... P09144 N/A
    35546 7bgq:A (1.75) BS03 CA ? GO:0000122 ... P31947 34047554
    35547 7bgr:A (1.8) BS03 CA ? GO:0000122 ... P31947 34047554
    35548 7bgw:A (1.9) BS03 CA ? GO:0000122 ... P31947 34047554
    35549 7bh8:G (1.8) BS02 CA N/A N/A N/A 35347236
    35550 7bi3:A (1.2) BS03 CA ? GO:0000122 ... P31947 34076416
    35551 7bip:B (1.6) BS01 CA ? GO:0004497 ... W8QPS6 33763824
    35552 7biq:A (1.2) BS03 CA ? GO:0000122 ... P31947 34076416
    35553 7biw:A (1.2) BS03 CA ? GO:0000122 ... P31947 34076416
    35554 7biz:A (1.53) BS02 CA ? N/A Q8A6C8 35227073
    35555 7biz:A (1.53) BS03 CA ? N/A Q8A6C8 35227073
    35556 7biz:B (1.53) BS02 CA ? N/A Q8A6C8 35227073
    35557 7biz:B (1.53) BS03 CA ? N/A Q8A6C8 35227073
    35558 7bj3:A (2.6) BS01 CA 3.4.21.110 GO:0004252 ... P58099 33897974
    35559 7bjb:A (1.8) BS03 CA ? GO:0000122 ... P31947 34076416
    35560 7bjt:A (1.42) BS01 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    35561 7bjt:A (1.42) BS04 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    35562 7bjt:B (1.42) BS02 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    35563 7blg:A (1.18) BS02 CA ? N/A Q8A3D9 N/A
    35564 7blh:AAAA (1.79) BS02 CA ? N/A Q8A3D9 N/A
    35565 7blj:A (1.76) BS02 CA ? N/A Q8A3D9 N/A
    35566 7blk:A (1.06) BS01 CA ? N/A Q8A3D9 N/A
    35567 7blx:B (3.15) BS48 CA 1.97.1.12 GO:0000287 ... P09144 N/A
    35568 7blz:B (3.1) BS48 CA 1.97.1.12 GO:0000287 ... Q85FY6 N/A
    35569 7blz:B (3.1) BS49 CA 1.97.1.12 GO:0000287 ... Q85FY6 N/A
    35570 7bm6:A (2.16) BS03 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    35571 7bm6:B (2.16) BS04 CA 4.2.2.3 GO:0016829 ... G0LCA3 34184062
    35572 7brv:A (1.55) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35573 7brw:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35574 7brx:A (1.35) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35575 7bry:A (1.65) BS02 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35576 7brz:A (1.3) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35577 7bs0:A (1.85) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35578 7bs1:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35579 7bs2:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35580 7bs3:A (1.28) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35581 7bs4:A (1.04) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35582 7bs5:A (1.17) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35583 7bs6:A (1.04) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35584 7bs7:A (1.04) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35585 7bs8:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35586 7bs9:A (1.05) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35587 7bsa:A (1.22) BS01 CA 3.4.21.4 GO:0004175 ... P00760 34094189
    35588 7buk:A (2.644) BS02 CA 3.1.1.3 GO:0004806 ... Q842J9 34061877
    35589 7buk:B (2.644) BS02 CA 3.1.1.3 GO:0004806 ... Q842J9 34061877
    35590 7bvc:A (2.9) BS02 CA 2.4.2.- GO:0005886 ... A0R613 32327601
    35591 7bvc:B (2.9) BS03 CA 2.4.2.- GO:0005886 ... A0R614 32327601
    35592 7bve:B (2.81) BS01 CA 2.4.2.- GO:0005886 ... A0R612 32327601
    35593 7bvf:B (2.97) BS01 CA 2.4.2.- GO:0005886 ... P9WNL7 32327601
    35594 7bvg:A (3.1) BS02 CA 2.4.2.- GO:0005886 ... A0R613 32327601
    35595 7bvh:A (3.3) BS05 CA 2.4.2.- GO:0005886 ... A0R612 32327601
    35596 7bvh:B (3.3) BS06 CA 2.4.2.- GO:0005886 ... A0R612 32327601
    35597 7bwr:A (3.5) BS01 CA 2.4.2.- GO:0005886 ... A0R614 32363534
    35598 7bwu:A (1.87) BS01 CA 3.2.1.18 GO:0004308 ... I7EFR1 N/A
    35599 7bwu:B (1.87) BS01 CA 3.2.1.18 GO:0004308 ... I7EFR1 N/A
    35600 7bwu:C (1.87) BS01 CA 3.2.1.18 GO:0004308 ... I7EFR1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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