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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    35001 6y94:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 32317284
    35002 6y94:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 32317284
    35003 6y98:A (2.8) BS03 CA ? N/A B4UMX2 32669365
    35004 6y9j:A (1.1) BS03 CA ? N/A Q6FUW5 32669365
    35005 6y9t:A (2.78) BS01 CA 3.2.1.10 GO:0004556 ... Q5FI02 32444471
    35006 6y9t:B (2.78) BS01 CA 3.2.1.10 GO:0004556 ... Q5FI02 32444471
    35007 6ya9:A (2.15) BS01 CA ? GO:0000086 ... P0DP23 34845372
    35008 6ya9:A (2.15) BS02 CA ? GO:0000086 ... P0DP23 34845372
    35009 6ya9:A (2.15) BS03 CA ? GO:0000086 ... P0DP23 34845372
    35010 6ya9:A (2.15) BS04 CA ? GO:0000086 ... P0DP23 34845372
    35011 6ya9:A (2.15) BS05 CA ? GO:0000086 ... P0DP23 34845372
    35012 6ya9:A (2.15) BS06 CA ? GO:0000086 ... P0DP23 34845372
    35013 6yac:B (2.5) BS45 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    35014 6yak:AAA (1.34) BS02 CA N/A N/A N/A 33193259
    35015 6yak:AAA (1.34) BS03 CA N/A N/A N/A 33193259
    35016 6yak:CCC (1.34) BS02 CA N/A N/A N/A 33193259
    35017 6yak:CCC (1.34) BS03 CA N/A N/A N/A 33193259
    35018 6yau:A (1.397) BS01 CA ? N/A P07306 33344141
    35019 6yau:A (1.397) BS02 CA ? N/A P07306 33344141
    35020 6yau:A (1.397) BS03 CA ? N/A P07306 33344141
    35021 6ycu:A (1.35) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    35022 6ycu:A (1.35) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    35023 6ycw:A (1.34) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    35024 6ycw:A (1.34) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    35025 6yd2:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35026 6yd2:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35027 6yd2:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35028 6yd3:A (2.0) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35029 6yd3:A (2.0) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35030 6yd3:A (2.0) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35031 6yd4:A (1.7) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35032 6yd4:A (1.7) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35033 6yd4:A (1.7) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35034 6yd7:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35035 6yd7:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35036 6yd7:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 33732412
    35037 6ydy:A (1.45) BS01 CA 3.4.21.4 GO:0004252 ... P00760 N/A
    35038 6ye2:A (2.44) BS04 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 33399453
    35039 6ye2:B (2.44) BS04 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 33399453
    35040 6yet:A (-1.00) BS01 CA ? GO:0005509 ... Q9LM78 34031427
    35041 6yeu:A (-1.00) BS01 CA ? GO:0005509 ... Q9LM78 34031427
    35042 6yez:3 (2.7) BS02 CA ? GO:0009765 ... Q32904 33020607
    35043 6yez:B (2.7) BS45 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    35044 6yf6:A (2.0) BS02 CA ? N/A A0A0H3CQ33 N/A
    35045 6yf6:B (2.0) BS02 CA ? N/A A0A0H3CQ33 N/A
    35046 6yfk:AC (3.7) BS01 CA N/A GO:0005198 ... N/A 32917600
    35047 6yfk:AO (3.7) BS01 CA N/A GO:0005198 ... N/A 32917600
    35048 6yfk:AU (3.7) BS01 CA N/A GO:0005198 ... N/A 32917600
    35049 6yfk:BG (3.7) BS01 CA N/A GO:0005198 ... N/A 32917600
    35050 6yge:A (1.6) BS01 CA 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 33712585
    35051 6yge:B (1.6) BS01 CA 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 33712585
    35052 6ygg:A (1.85) BS02 CA 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 33712585
    35053 6ygg:B (1.85) BS02 CA 3.2.2.-
    3.2.2.5    		 GO:0050135 ... Q4WL81 33712585
    35054 6ygq:A (1.9) BS01 CA ? N/A A0A0M7CBI0 N/A
    35055 6ygq:B (1.9) BS01 CA ? N/A A0A0M7CBI0 N/A
    35056 6ygq:C (1.9) BS01 CA ? N/A A0A0M7CBI0 N/A
    35057 6ygq:D (1.9) BS01 CA ? N/A A0A0M7CBI0 N/A
    35058 6yh0:AAA (1.56) BS08 CA ? GO:0046872 ... Q8X123 34235469
    35059 6yh0:AAA (1.56) BS09 CA ? GO:0046872 ... Q8X123 34235469
    35060 6yi6:E (1.44) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35061 6yi6:E (1.44) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35062 6yi6:E (1.44) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35063 6yi6:E (1.44) BS05 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35064 6yig:A (1.55) BS01 CA ? GO:0005509 ... Q9LM78 34031427
    35065 6yii:A (1.44) BS02 CA 4.6.1.26 GO:0000166 ... P0DV40 32454240
    35066 6yis:A (1.19) BS01 CA 3.4.21.4 GO:0004252 ... P00760 N/A
    35067 6yit:A (1.25) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    35068 6yiu:A (1.36) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    35069 6yiw:A (0.97) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    35070 6yiy:A (1.11) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    35071 6yjm:A (2.25) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    35072 6yjm:A (2.25) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    35073 6yjm:A (2.25) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    35074 6yjm:B (2.25) BS02 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    35075 6yjm:B (2.25) BS03 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    35076 6yjm:B (2.25) BS04 CA 3.4.24.- GO:0004222 ... Q9UNA0 33719441
    35077 6ymr:E (1.6) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35078 6ymr:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35079 6ymr:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35080 6ymr:E (1.6) BS05 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35081 6yms:E (1.32) BS01 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35082 6yms:E (1.32) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35083 6yms:E (1.32) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35084 6yms:E (1.32) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    35085 6yns:A (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35086 6yns:A (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35087 6yns:A (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    35088 6yns:A (3.94) BS07 CA ? GO:0000086 ... P0DP23 33977052
    35089 6yns:B (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35090 6yns:B (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    35091 6yns:B (3.94) BS07 CA ? GO:0000086 ... P0DP23 33977052
    35092 6yns:B (3.94) BS08 CA ? GO:0000086 ... P0DP23 33977052
    35093 6yns:C (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35094 6yns:C (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35095 6yns:D (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35096 6yns:D (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35097 6yns:E (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35098 6yns:E (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    35099 6yns:F (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35100 6yns:F (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35101 6yns:G (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35102 6yns:G (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35103 6yns:H (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35104 6yns:H (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    35105 6yns:I (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35106 6yns:I (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35107 6yns:J (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35108 6yns:J (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35109 6yns:K (3.94) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35110 6yns:K (3.94) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35111 6yns:K (3.94) BS06 CA ? GO:0000086 ... P0DP23 33977052
    35112 6yns:L (3.94) BS03 CA ? GO:0000086 ... P0DP23 33977052
    35113 6ynu:A (3.12) BS02 CA ? GO:0000086 ... P0DP23 33977052
    35114 6ynu:A (3.12) BS03 CA ? GO:0000086 ... P0DP23 33977052
    35115 6ynu:A (3.12) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35116 6ynu:A (3.12) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35117 6ynu:A (3.12) BS06 CA ? GO:0000086 ... P0DP23 33977052
    35118 6ynu:C (3.12) BS02 CA ? GO:0000086 ... P0DP23 33977052
    35119 6ynu:C (3.12) BS03 CA ? GO:0000086 ... P0DP23 33977052
    35120 6ynu:C (3.12) BS04 CA ? GO:0000086 ... P0DP23 33977052
    35121 6ynu:C (3.12) BS05 CA ? GO:0000086 ... P0DP23 33977052
    35122 6yo3:A (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    35123 6yo3:B (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    35124 6yo3:C (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    35125 6yo3:D (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    35126 6yoh:A (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    35127 6yoh:B (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    35128 6yoh:C (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    35129 6yoh:D (1.84) BS01 CA ? GO:0005737 ... Q05097 33314528
    35130 6yox:A (2.05) BS03 CA ? GO:0000122 ... P31947 32816380
    35131 6ype:A (1.45) BS01 CA ? N/A Q15818 32855309
    35132 6ype:A (1.45) BS02 CA ? N/A Q15818 32855309
    35133 6ype:B (1.45) BS01 CA ? N/A Q15818 32855309
    35134 6ype:B (1.45) BS02 CA ? N/A Q15818 32855309
    35135 6yq7:A (1.58) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33497208
    35136 6yq7:B (1.58) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33497208
    35137 6yq9:AAA (1.55) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    35138 6yq9:BBB (1.55) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    35139 6yqa:AAA (1.67) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    35140 6yqa:BBB (1.67) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    35141 6yqb:AAA (1.5) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    35142 6yqb:BBB (1.5) BS01 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    35143 6yqc:AAA (1.35) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    35144 6yqc:BBB (1.35) BS02 CA 3.2.1.1 GO:0004556 ... A0A1S9DH83 33497208
    35145 6yup:A (2.9) BS01 CA ? GO:0005515 ... Q07837 32817565
    35146 6yup:C (2.9) BS01 CA ? GO:0005515 ... Q07837 32817565
    35147 6yuz:A (2.8) BS01 CA ? GO:0005515 ... Q07837 32817565
    35148 6yuz:C (2.8) BS01 CA ? GO:0005515 ... Q07837 32817565
    35149 6ywn:A (1.45) BS01 CA ? N/A G2R014 32785623
    35150 6yxh:A (2.6) BS02 CA 3.5.1.-
    3.5.1.23    		 GO:0000139 ... Q9NUN7 34723237
    35151 6yza:A (1.3) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    35152 6yzc:A (1.42) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    35153 6z1k:A (1.48) BS01 CA N/A GO:0016787 ... N/A 34916595
    35154 6z28:A (2.3) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35155 6z28:A (2.3) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35156 6z28:A (2.3) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35157 6z28:A (2.3) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    35158 6z2p:A (2.16) BS03 CA ? GO:0046872 ... B2UR60 32973204
    35159 6z6z:A (1.78) BS01 CA ? GO:0005506 ... P80188 N/A
    35160 6z7p:A (4.8) BS05 CA ? GO:0005509 ... P35828 31883796
    35161 6z7p:A (4.8) BS06 CA ? GO:0005509 ... P35828 31883796
    35162 6z7p:A (4.8) BS07 CA ? GO:0005509 ... P35828 31883796
    35163 6z7p:A (4.8) BS08 CA ? GO:0005509 ... P35828 31883796
    35164 6z7p:A (4.8) BS09 CA ? GO:0005509 ... P35828 31883796
    35165 6z7p:A (4.8) BS10 CA ? GO:0005509 ... P35828 31883796
    35166 6z7p:A (4.8) BS11 CA ? GO:0005509 ... P35828 31883796
    35167 6z7p:A (4.8) BS12 CA ? GO:0005509 ... P35828 31883796
    35168 6z7p:A (4.8) BS13 CA ? GO:0005509 ... P35828 31883796
    35169 6z7p:A (4.8) BS14 CA ? GO:0005509 ... P35828 31883796
    35170 6z7p:A (4.8) BS15 CA ? GO:0005509 ... P35828 31883796
    35171 6z7p:A (4.8) BS16 CA ? GO:0005509 ... P35828 31883796
    35172 6z7p:A (4.8) BS17 CA ? GO:0005509 ... P35828 31883796
    35173 6z7p:A (4.8) BS18 CA ? GO:0005509 ... P35828 31883796
    35174 6z7p:A (4.8) BS19 CA ? GO:0005509 ... P35828 31883796
    35175 6z7p:A (4.8) BS20 CA ? GO:0005509 ... P35828 31883796
    35176 6z7p:A (4.8) BS21 CA ? GO:0005509 ... P35828 31883796
    35177 6z7p:A (4.8) BS22 CA ? GO:0005509 ... P35828 31883796
    35178 6z7p:A (4.8) BS23 CA ? GO:0005509 ... P35828 31883796
    35179 6z7p:A (4.8) BS24 CA ? GO:0005509 ... P35828 31883796
    35180 6z7p:A (4.8) BS25 CA ? GO:0005509 ... P35828 31883796
    35181 6z7p:A (4.8) BS26 CA ? GO:0005509 ... P35828 31883796
    35182 6z8l:A (1.4) BS08 CA 3.2.1.1 GO:0003824 ... P04746 34163891
    35183 6z9b:A (2.17) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32614585
    35184 6z9d:A (1.9) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32614585
    35185 6z9v:E (2.01) BS01 CA ? GO:0000139 ... P61769 34321228
    35186 6za2:A (3.35) BS01 CA ? GO:0006508 ... B2RGP6 34593635
    35187 6za2:A (3.35) BS02 CA ? GO:0006508 ... B2RGP6 34593635
    35188 6za2:B (3.35) BS01 CA ? GO:0006508 ... B2RGP6 34593635
    35189 6za2:B (3.35) BS02 CA ? GO:0006508 ... B2RGP6 34593635
    35190 6zbi:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 33655882
    35191 6zbi:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 33655882
    35192 6zbi:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 33655882
    35193 6zbi:A (-1.00) BS04 CA ? GO:0000086 ... P0DP23 33655882
    35194 6zcv:A (1.7) BS01 CA 1.1.2.8 GO:0005509 ... Q88JH0 N/A
    35195 6zdy:A (1.45) BS01 CA ? GO:0001533 ... P31725 33359632
    35196 6zdy:A (1.45) BS02 CA ? GO:0001533 ... P31725 33359632
    35197 6zet:AAA (2.701) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32850967
    35198 6zeu:AAA (2.004) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32850967
    35199 6zev:AAA (2.4) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32850967
    35200 6zfe:A (2.35) BS01 CA ? GO:0001533 ... P31725 33359632
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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