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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    34801 6xs3:A (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34802 6xs3:B (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34803 6xs3:B (2.48) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34804 6xs3:C (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34805 6xs3:D (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34806 6xs3:E (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34807 6xs3:F (2.48) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34808 6xsb:A (1.95) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    34809 6xsc:A (2.0) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    34810 6xse:A (2.1) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    34811 6xsg:A (2.0) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    34812 6xsh:A (2.0) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    34813 6xsi:A (2.0) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    34814 6xsj:A (1.4) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33814275
    34815 6xsj:B (1.4) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33814275
    34816 6xsv:A (1.65) BS03 CA 3.2.1.1 GO:0004556 ... P0C1B3 33814275
    34817 6xsw:C (2.98) BS01 CA ? GO:0007219 ... Q9UM47 34095881
    34818 6xsw:C (2.98) BS02 CA ? GO:0007219 ... Q9UM47 34095881
    34819 6xsw:C (2.98) BS03 CA ? GO:0007219 ... Q9UM47 34095881
    34820 6xsw:F (2.98) BS01 CA ? GO:0007219 ... Q9UM47 34095881
    34821 6xsw:F (2.98) BS02 CA ? GO:0007219 ... Q9UM47 34095881
    34822 6xsw:F (2.98) BS03 CA ? GO:0007219 ... Q9UM47 34095881
    34823 6xsw:J (2.98) BS01 CA ? GO:0007219 ... Q9UM47 34095881
    34824 6xsw:J (2.98) BS02 CA ? GO:0007219 ... Q9UM47 34095881
    34825 6xsw:J (2.98) BS03 CA ? GO:0007219 ... Q9UM47 34095881
    34826 6xsw:X (2.98) BS01 CA ? GO:0007219 ... Q9UM47 34095881
    34827 6xsw:X (2.98) BS02 CA ? GO:0007219 ... Q9UM47 34095881
    34828 6xsw:X (2.98) BS03 CA ? GO:0007219 ... Q9UM47 34095881
    34829 6xsw:X (2.98) BS04 CA ? GO:0007219 ... Q9UM47 34095881
    34830 6xt6:A (2.103) BS02 CA ? GO:0005537 ... P02866 34235541
    34831 6xt6:A (2.103) BS04 CA ? GO:0005537 ... P02866 34235541
    34832 6xt6:B (2.103) BS02 CA ? GO:0005537 ... P02866 34235541
    34833 6xtl:A (1.8) BS02 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34834 6xtl:A (1.8) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34835 6xtm:A (1.25) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34836 6xtm:A (1.25) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34837 6xtn:A (1.4) BS02 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34838 6xtn:A (1.4) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34839 6xto:A (1.4) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34840 6xto:A (1.4) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34841 6xtp:A (1.8) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34842 6xtp:A (1.8) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34843 6xtq:A (1.4) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34844 6xtq:A (1.4) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34845 6xtr:A (1.2) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34846 6xtr:A (1.2) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34847 6xts:A (1.2) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34848 6xts:A (1.2) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    34849 6xu4:A (3.18) BS01 CA ? GO:0001411 ... P60204 32344594
    34850 6xu4:A (3.18) BS02 CA ? GO:0001411 ... P60204 32344594
    34851 6xu4:A (3.18) BS03 CA ? GO:0001411 ... P60204 32344594
    34852 6xu4:A (3.18) BS04 CA ? GO:0001411 ... P60204 32344594
    34853 6xu4:B (3.18) BS01 CA ? GO:0001411 ... P60204 32344594
    34854 6xu4:B (3.18) BS02 CA ? GO:0001411 ... P60204 32344594
    34855 6xu4:B (3.18) BS03 CA ? GO:0001411 ... P60204 32344594
    34856 6xu4:B (3.18) BS04 CA ? GO:0001411 ... P60204 32344594
    34857 6xu4:E (3.18) BS01 CA ? GO:0001411 ... P60204 32344594
    34858 6xu4:E (3.18) BS02 CA ? GO:0001411 ... P60204 32344594
    34859 6xue:A (1.94) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32212732
    34860 6xue:B (1.94) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32212732
    34861 6xug:A (2.09) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32212732
    34862 6xug:B (2.09) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32212732
    34863 6xuq:A (1.97) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 32212732
    34864 6xux:A (1.90001) BS01 CA 3.2.1.- GO:0004555 ... P42592 33408403
    34865 6xvu:A (2.1) BS01 CA ? GO:0000160 ... Q9RZA5 34285211
    34866 6xvu:A (2.1) BS02 CA ? GO:0000160 ... Q9RZA5 34285211
    34867 6xvu:A (2.1) BS03 CA ? GO:0000160 ... Q9RZA5 34285211
    34868 6xvu:B (2.1) BS01 CA ? GO:0000160 ... Q9RZA5 34285211
    34869 6xvu:B (2.1) BS02 CA ? GO:0000160 ... Q9RZA5 34285211
    34870 6xvu:C (2.1) BS01 CA ? GO:0000160 ... Q9RZA5 34285211
    34871 6xvu:C (2.1) BS02 CA ? GO:0000160 ... Q9RZA5 34285211
    34872 6xvu:C (2.1) BS03 CA ? GO:0000160 ... Q9RZA5 34285211
    34873 6xvu:D (2.1) BS01 CA ? GO:0000160 ... Q9RZA5 34285211
    34874 6xvu:D (2.1) BS02 CA ? GO:0000160 ... Q9RZA5 34285211
    34875 6xw2:A (1.75) BS01 CA N/A GO:0005509 ... N/A 32121243
    34876 6xw2:A (1.75) BS02 CA N/A GO:0005509 ... N/A 32121243
    34877 6xw2:A (1.75) BS03 CA N/A GO:0005509 ... N/A 32121243
    34878 6xw2:A (1.75) BS04 CA N/A GO:0005509 ... N/A 32121243
    34879 6xwd:A (1.6) BS02 CA ? GO:0000122 ... P31947 33109610
    34880 6xxf:AAA (1.7) BS02 CA ? GO:0000086 ... P0DP24 34888671
    34881 6xxf:AAA (1.7) BS03 CA ? GO:0000086 ... P0DP24 34888671
    34882 6xxf:AAA (1.7) BS04 CA ? GO:0000086 ... P0DP24 34888671
    34883 6xxf:AAA (1.7) BS05 CA ? GO:0000086 ... P0DP24 34888671
    34884 6xxg:AAA (2.099) BS02 CA 2.2.1.7 GO:0003824 ... Q9RUB5 33421767
    34885 6xxg:AAA (2.099) BS04 CA 2.2.1.7 GO:0003824 ... Q9RUB5 33421767
    34886 6xxg:BBB (2.099) BS02 CA 2.2.1.7 GO:0003824 ... Q9RUB5 33421767
    34887 6xxg:BBB (2.099) BS06 CA 2.2.1.7 GO:0003824 ... Q9RUB5 33421767
    34888 6xxg:BBB (2.099) BS07 CA 2.2.1.7 GO:0003824 ... Q9RUB5 33421767
    34889 6xxx:AAA (1.25) BS02 CA ? GO:0000086 ... P0DP23 34888671
    34890 6xxx:AAA (1.25) BS03 CA ? GO:0000086 ... P0DP23 34888671
    34891 6xxx:AAA (1.25) BS04 CA ? GO:0000086 ... P0DP23 34888671
    34892 6xxx:AAA (1.25) BS05 CA ? GO:0000086 ... P0DP23 34888671
    34893 6xy3:AAA (2.0) BS02 CA ? GO:0000086 ... P0DP23 34888671
    34894 6xy3:AAA (2.0) BS03 CA ? GO:0000086 ... P0DP23 34888671
    34895 6xy3:AAA (2.0) BS04 CA ? GO:0000086 ... P0DP23 34888671
    34896 6xy3:AAA (2.0) BS05 CA ? GO:0000086 ... P0DP23 34888671
    34897 6xyg:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    34898 6xyk:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    34899 6xyr:A (2.079) BS01 CA 3.2.1.17 GO:0000086 ... P00720
    P0DP23    		 34587504
    34900 6xyr:A (2.079) BS02 CA 3.2.1.17 GO:0000086 ... P00720
    P0DP23    		 34587504
    34901 6xyr:A (2.079) BS03 CA 3.2.1.17 GO:0000086 ... P00720
    P0DP23    		 34587504
    34902 6xyr:A (2.079) BS04 CA 3.2.1.17 GO:0000086 ... P00720
    P0DP23    		 34587504
    34903 6xyr:A (2.079) BS05 CA 3.2.1.17 GO:0000086 ... P00720
    P0DP23    		 34587504
    34904 6y0u:A (1.489) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    34905 6y0u:A (1.489) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    34906 6y0u:B (1.489) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    34907 6y0u:B (1.489) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    34908 6y0u:C (1.489) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    34909 6y0u:C (1.489) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    34910 6y0u:D (1.489) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    34911 6y0u:D (1.489) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    34912 6y0v:A (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    34913 6y0v:A (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    34914 6y0v:B (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    34915 6y0v:B (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    34916 6y0v:C (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    34917 6y0v:C (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    34918 6y0v:D (1.98) BS01 CA ? GO:0030246 ... Q9HYN5 34977576
    34919 6y0v:D (1.98) BS02 CA ? GO:0030246 ... Q9HYN5 34977576
    34920 6y0w:A (2.06) BS01 CA ? GO:0030246 ... Q9HYN5 N/A
    34921 6y0w:A (2.06) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    34922 6y0w:B (2.06) BS02 CA ? GO:0030246 ... Q9HYN5 N/A
    34923 6y0w:B (2.06) BS03 CA ? GO:0030246 ... Q9HYN5 N/A
    34924 6y1j:A (1.127) BS02 CA ? GO:0000122 ... P31947 32201828
    34925 6y1j:A (1.127) BS03 CA ? GO:0000122 ... P31947 32201828
    34926 6y41:A (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34927 6y41:B (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34928 6y41:C (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34929 6y41:D (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34930 6y41:E (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34931 6y41:F (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34932 6y41:G (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34933 6y41:H (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34934 6y41:I (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34935 6y41:J (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34936 6y41:K (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34937 6y41:L (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34938 6y41:M (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34939 6y41:N (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34940 6y41:O (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34941 6y41:P (1.79) BS01 CA ? N/A Q9UKU9 N/A
    34942 6y43:A (1.6) BS01 CA ? N/A Q8NI99 N/A
    34943 6y4i:E (1.16) BS01 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    34944 6y4i:E (1.16) BS02 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    34945 6y4i:E (1.16) BS03 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    34946 6y4i:E (1.16) BS04 CA 3.4.24.27 GO:0004222 ... P43133 N/A
    34947 6y4m:A (3.34) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 33544599
    34948 6y4m:C (3.34) BS04 CA 3.6.5.- GO:0000226 ... Q2XVP4 33544599
    34949 6y4n:A (2.852) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 33544599
    34950 6y4n:C (2.852) BS04 CA 3.6.5.- GO:0000226 ... Q2XVP4 33544599
    34951 6y4o:A (1.83549) BS02 CA ? GO:0000086 ... P0DP23 32317284
    34952 6y4o:A (1.83549) BS03 CA ? GO:0000086 ... P0DP23 32317284
    34953 6y4o:A (1.83549) BS04 CA ? GO:0000086 ... P0DP23 32317284
    34954 6y4o:A (1.83549) BS05 CA ? GO:0000086 ... P0DP23 32317284
    34955 6y4p:A (2.13326) BS02 CA ? GO:0000086 ... P0DP23 32317284
    34956 6y4p:A (2.13326) BS03 CA ? GO:0000086 ... P0DP23 32317284
    34957 6y4p:A (2.13326) BS04 CA ? GO:0000086 ... P0DP23 32317284
    34958 6y4p:A (2.13326) BS05 CA ? GO:0000086 ... P0DP23 32317284
    34959 6y5s:A (0.95) BS01 CA 3.4.21.62 GO:0004252 ... P29600 32617193
    34960 6y5t:A (1.1) BS01 CA 3.4.21.62 GO:0004252 ... P29600 32617193
    34961 6y6d:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 32657585
    34962 6y6d:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 32657585
    34963 6y6s:A (2.1) BS02 CA 3.2.1.46 GO:0004336 ... P54818 33488964
    34964 6y6t:A (2.25) BS02 CA 3.2.1.46 GO:0004336 ... P54818 33488964
    34965 6y6y:B (1.67) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    34966 6y71:A (1.64) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    34967 6y71:B (1.64) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    34968 6y72:A (1.55) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    34969 6y72:B (1.55) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    34970 6y7d:B (1.6) BS01 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    34971 6y7e:B (1.6) BS02 CA 1.7.2.4 GO:0004129 ... P19573 34164092
    34972 6y7w:A (1.39) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34973 6y7w:A (1.39) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34974 6y7x:A (1.45) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34975 6y7x:A (1.45) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34976 6y7y:A (1.51) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34977 6y7y:A (1.51) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34978 6y7y:A (1.51) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34979 6y7z:A (1.35) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34980 6y7z:A (1.35) BS04 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34981 6y80:A (1.24) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34982 6y80:A (1.24) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34983 6y81:A (1.54) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34984 6y81:A (1.54) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34985 6y81:A (1.54) BS04 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    34986 6y82:A (1.44) BS02 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34987 6y82:A (1.44) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34988 6y82:A (1.44) BS04 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34989 6y85:A (1.58) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34990 6y85:A (1.58) BS04 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34991 6y8e:A (1.42) BS02 CA ? GO:0000122 ... P31947 33006579
    34992 6y8f:A (1.472) BS04 CA ? GO:0005975 ... A0A7M4DUB5 35414716
    34993 6y8f:A (1.472) BS05 CA ? GO:0005975 ... A0A7M4DUB5 35414716
    34994 6y8h:A (1.37) BS02 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34995 6y8h:A (1.37) BS03 CA 2.7.11.24 GO:0000077 ... P47811 N/A
    34996 6y8x:AA (2.25) BS01 CA N/A GO:0004614 ... N/A 33287293
    34997 6y8y:A (1.95) BS01 CA ? GO:0004614 ... A0A6P3VN15 33287293
    34998 6y8z:A (2.05) BS01 CA ? GO:0004614 ... A0A6P3VN15 33287293
    34999 6y94:A (-1.00) BS01 CA ? GO:0000086 ... P0DP23 32317284
    35000 6y94:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 32317284
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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