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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    34601 6x5w:A (1.8) BS05 CA ? N/A A1YIY3 N/A
    34602 6x5w:A (1.8) BS06 CA ? N/A A1YIY3 N/A
    34603 6x5w:A (1.8) BS07 CA ? N/A A1YIY3 N/A
    34604 6x5w:A (1.8) BS08 CA ? N/A A1YIY3 N/A
    34605 6x5w:A (1.8) BS09 CA ? N/A A1YIY3 N/A
    34606 6x5w:A (1.8) BS10 CA ? N/A A1YIY3 N/A
    34607 6x5w:A (1.8) BS11 CA ? N/A A1YIY3 N/A
    34608 6x5w:A (1.8) BS12 CA ? N/A A1YIY3 N/A
    34609 6x5w:A (1.8) BS13 CA ? N/A A1YIY3 N/A
    34610 6x5w:A (1.8) BS14 CA ? N/A A1YIY3 N/A
    34611 6x5w:A (1.8) BS15 CA ? N/A A1YIY3 N/A
    34612 6x5w:A (1.8) BS16 CA ? N/A A1YIY3 N/A
    34613 6x5x:A (1.92) BS01 CA 3.4.24.- GO:0004222 ... P0DQT6 32946987
    34614 6x67:C (3.47) BS07 CA ? N/A Q283G1 N/A
    34615 6x67:C (3.47) BS08 CA ? N/A Q283G1 N/A
    34616 6x67:D (3.47) BS07 CA ? N/A Q283G1 N/A
    34617 6x67:D (3.47) BS08 CA ? N/A Q283G1 N/A
    34618 6x68:C (3.66) BS03 CA ? N/A Q283G1 N/A
    34619 6x68:D (3.66) BS05 CA ? N/A Q283G1 N/A
    34620 6x6m:A (1.9) BS02 CA ? N/A A1YIY3 N/A
    34621 6x6m:A (1.9) BS03 CA ? N/A A1YIY3 N/A
    34622 6x6m:A (1.9) BS04 CA ? N/A A1YIY3 N/A
    34623 6x6m:A (1.9) BS05 CA ? N/A A1YIY3 N/A
    34624 6x6m:A (1.9) BS06 CA ? N/A A1YIY3 N/A
    34625 6x6m:A (1.9) BS07 CA ? N/A A1YIY3 N/A
    34626 6x6m:A (1.9) BS08 CA ? N/A A1YIY3 N/A
    34627 6x6m:A (1.9) BS09 CA ? N/A A1YIY3 N/A
    34628 6x6m:A (1.9) BS10 CA ? N/A A1YIY3 N/A
    34629 6x6m:A (1.9) BS11 CA ? N/A A1YIY3 N/A
    34630 6x6m:A (1.9) BS12 CA ? N/A A1YIY3 N/A
    34631 6x6m:A (1.9) BS13 CA ? N/A A1YIY3 N/A
    34632 6x6m:A (1.9) BS14 CA ? N/A A1YIY3 N/A
    34633 6x6m:A (1.9) BS15 CA ? N/A A1YIY3 N/A
    34634 6x6q:A (2.17) BS02 CA ? N/A A1YIY3 N/A
    34635 6x6q:A (2.17) BS03 CA ? N/A A1YIY3 N/A
    34636 6x6q:A (2.17) BS04 CA ? N/A A1YIY3 N/A
    34637 6x6q:A (2.17) BS05 CA ? N/A A1YIY3 N/A
    34638 6x6q:A (2.17) BS06 CA ? N/A A1YIY3 N/A
    34639 6x6q:A (2.17) BS07 CA ? N/A A1YIY3 N/A
    34640 6x6q:A (2.17) BS08 CA ? N/A A1YIY3 N/A
    34641 6x6q:A (2.17) BS09 CA ? N/A A1YIY3 N/A
    34642 6x6q:A (2.17) BS10 CA ? N/A A1YIY3 N/A
    34643 6x6q:A (2.17) BS11 CA ? N/A A1YIY3 N/A
    34644 6x6q:A (2.17) BS12 CA ? N/A A1YIY3 N/A
    34645 6x6q:A (2.17) BS13 CA ? N/A A1YIY3 N/A
    34646 6x6q:A (2.17) BS14 CA ? N/A A1YIY3 N/A
    34647 6x6q:A (2.17) BS15 CA ? N/A A1YIY3 N/A
    34648 6x6z:A (1.4) BS03 CA 2.7.7.- GO:0003684 ... P12689 32999062
    34649 6x6z:A (1.4) BS04 CA 2.7.7.- GO:0003684 ... P12689 32999062
    34650 6x6z:A (1.4) BS06 CA 2.7.7.- GO:0003684 ... P12689 32999062
    34651 6x77:A (1.64) BS03 CA 2.7.7.- GO:0003684 ... P12689 32999062
    34652 6x77:A (1.64) BS04 CA 2.7.7.- GO:0003684 ... P12689 32999062
    34653 6x77:A (1.64) BS05 CA 2.7.7.- GO:0003684 ... P12689 32999062
    34654 6x7j:A (0.97) BS02 CA ? N/A A1YIY3 33824212
    34655 6x7j:A (0.97) BS03 CA ? N/A A1YIY3 33824212
    34656 6x7j:A (0.97) BS04 CA ? N/A A1YIY3 33824212
    34657 6x7j:A (0.97) BS05 CA ? N/A A1YIY3 33824212
    34658 6x7j:A (0.97) BS07 CA ? N/A A1YIY3 33824212
    34659 6x7t:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    34660 6x7t:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    34661 6x7t:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    34662 6x7t:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    34663 6x7t:A (1.0) BS05 CA ? N/A A1YIY3 33824212
    34664 6x7x:A (1.3) BS01 CA ? N/A A1YIY3 33824212
    34665 6x7x:A (1.3) BS02 CA ? N/A A1YIY3 33824212
    34666 6x7x:A (1.3) BS03 CA ? N/A A1YIY3 33824212
    34667 6x7x:A (1.3) BS04 CA ? N/A A1YIY3 33824212
    34668 6x7x:A (1.3) BS05 CA ? N/A A1YIY3 33824212
    34669 6x7x:A (1.3) BS06 CA ? N/A A1YIY3 33824212
    34670 6x7y:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    34671 6x7y:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    34672 6x7y:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    34673 6x7y:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    34674 6x7z:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    34675 6x7z:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    34676 6x7z:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    34677 6x7z:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    34678 6x8a:A (1.06) BS02 CA ? N/A A1YIY3 33824212
    34679 6x8a:A (1.06) BS03 CA ? N/A A1YIY3 33824212
    34680 6x8a:A (1.06) BS04 CA ? N/A A1YIY3 33824212
    34681 6x8a:A (1.06) BS05 CA ? N/A A1YIY3 33824212
    34682 6x8a:A (1.06) BS06 CA ? N/A A1YIY3 33824212
    34683 6x8a:A (1.06) BS07 CA ? N/A A1YIY3 33824212
    34684 6x8d:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    34685 6x8d:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    34686 6x8d:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    34687 6x8d:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    34688 6x8x:A (2.505) BS03 CA ? GO:0005506 ... P0ABE7 32830423
    34689 6x8x:A (2.505) BS04 CA ? GO:0005506 ... P0ABE7 32830423
    34690 6x8y:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    34691 6x8y:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    34692 6x8y:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    34693 6x8y:A (1.0) BS05 CA ? N/A A1YIY3 33824212
    34694 6x95:A (1.1) BS02 CA ? N/A A1YIY3 33824212
    34695 6x95:A (1.1) BS03 CA ? N/A A1YIY3 33824212
    34696 6x95:A (1.1) BS04 CA ? N/A A1YIY3 33824212
    34697 6x95:A (1.1) BS05 CA ? N/A A1YIY3 33824212
    34698 6x9m:A (1.0) BS01 CA ? N/A A1YIY3 33824212
    34699 6x9m:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    34700 6x9m:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    34701 6x9m:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    34702 6x9p:A (1.0) BS02 CA ? N/A A1YIY3 33824212
    34703 6x9p:A (1.0) BS03 CA ? N/A A1YIY3 33824212
    34704 6x9p:A (1.0) BS04 CA ? N/A A1YIY3 33824212
    34705 6x9p:A (1.0) BS05 CA ? N/A A1YIY3 33824212
    34706 6x9p:A (1.0) BS06 CA ? N/A A1YIY3 33824212
    34707 6xa5:A (1.03) BS02 CA ? N/A A1YIY3 33824212
    34708 6xa5:A (1.03) BS03 CA ? N/A A1YIY3 33824212
    34709 6xa5:A (1.03) BS04 CA ? N/A A1YIY3 33824212
    34710 6xa5:A (1.03) BS05 CA ? N/A A1YIY3 33824212
    34711 6xa5:A (1.03) BS06 CA ? N/A A1YIY3 33824212
    34712 6xa5:A (1.03) BS07 CA ? N/A A1YIY3 33824212
    34713 6xac:A (1.22) BS02 CA ? N/A A1YIY3 33824212
    34714 6xac:A (1.22) BS03 CA ? N/A A1YIY3 33824212
    34715 6xac:A (1.22) BS04 CA ? N/A A1YIY3 33824212
    34716 6xac:A (1.22) BS05 CA ? N/A A1YIY3 33824212
    34717 6xac:A (1.22) BS06 CA ? N/A A1YIY3 33824212
    34718 6xac:A (1.22) BS07 CA ? N/A A1YIY3 33824212
    34719 6xaq:A (1.2) BS01 CA ? N/A A1YIY3 33824212
    34720 6xaq:A (1.2) BS02 CA ? N/A A1YIY3 33824212
    34721 6xaq:A (1.2) BS03 CA ? N/A A1YIY3 33824212
    34722 6xaq:A (1.2) BS04 CA ? N/A A1YIY3 33824212
    34723 6xaq:A (1.2) BS05 CA ? N/A A1YIY3 33824212
    34724 6xar:A (2.501) BS02 CA 2.3.2.27 GO:0001784 ... P22681 33617900
    34725 6xar:B (2.501) BS02 CA 2.3.2.27 GO:0001784 ... P22681 33617900
    34726 6xdk:B (1.6) BS01 CA 2.6.1.52 GO:0004648 ... B2FKF0 N/A
    34727 6xdk:C (1.6) BS01 CA 2.6.1.52 GO:0004648 ... B2FKF0 N/A
    34728 6xdm:A (1.56) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    34729 6xdm:A (1.56) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    34730 6xdm:B (1.56) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    34731 6xdm:B (1.56) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    34732 6xdm:C (1.56) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    34733 6xdm:C (1.56) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32676157
    34734 6xeb:A (1.5) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34735 6xeb:A (1.5) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34736 6xeb:B (1.5) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34737 6xeb:B (1.5) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34738 6xeb:C (1.5) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34739 6xeb:C (1.5) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34740 6xec:A (1.701) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34741 6xec:A (1.701) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34742 6xec:B (1.701) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34743 6xec:B (1.701) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34744 6xec:C (1.701) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34745 6xec:C (1.701) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32738976
    34746 6xi1:AAA (1.75) BS01 CA ? N/A A0KNW4 32984811
    34747 6xi1:AAA (1.75) BS02 CA ? N/A A0KNW4 32984811
    34748 6xi1:AAA (1.75) BS03 CA ? N/A A0KNW4 32984811
    34749 6xi1:AAA (1.75) BS04 CA ? N/A A0KNW4 32984811
    34750 6xi1:AAA (1.75) BS05 CA ? N/A A0KNW4 32984811
    34751 6xi1:AAA (1.75) BS06 CA ? N/A A0KNW4 32984811
    34752 6xi1:AAA (1.75) BS07 CA ? N/A A0KNW4 32984811
    34753 6xi1:AAA (1.75) BS08 CA ? N/A A0KNW4 32984811
    34754 6xi1:AAA (1.75) BS09 CA ? N/A A0KNW4 32984811
    34755 6xi1:AAA (1.75) BS10 CA ? N/A A0KNW4 32984811
    34756 6xi1:AAA (1.75) BS11 CA ? N/A A0KNW4 32984811
    34757 6xi1:AAA (1.75) BS12 CA ? N/A A0KNW4 32984811
    34758 6xi1:AAA (1.75) BS13 CA ? N/A A0KNW4 32984811
    34759 6xi1:BBB (1.75) BS01 CA ? N/A A0KNW4 32984811
    34760 6xi1:BBB (1.75) BS02 CA ? N/A A0KNW4 32984811
    34761 6xi1:BBB (1.75) BS03 CA ? N/A A0KNW4 32984811
    34762 6xi1:BBB (1.75) BS04 CA ? N/A A0KNW4 32984811
    34763 6xi1:BBB (1.75) BS05 CA ? N/A A0KNW4 32984811
    34764 6xi1:BBB (1.75) BS06 CA ? N/A A0KNW4 32984811
    34765 6xi1:BBB (1.75) BS07 CA ? N/A A0KNW4 32984811
    34766 6xi1:BBB (1.75) BS08 CA ? N/A A0KNW4 32984811
    34767 6xi1:BBB (1.75) BS09 CA ? N/A A0KNW4 32984811
    34768 6xi1:BBB (1.75) BS10 CA ? N/A A0KNW4 32984811
    34769 6xi1:BBB (1.75) BS11 CA ? N/A A0KNW4 32984811
    34770 6xi1:BBB (1.75) BS12 CA ? N/A A0KNW4 32984811
    34771 6xi1:BBB (1.75) BS13 CA ? N/A A0KNW4 32984811
    34772 6xi3:AAA (2.0) BS01 CA N/A N/A N/A 32984811
    34773 6xi3:AAA (2.0) BS02 CA N/A N/A N/A 32984811
    34774 6xi3:AAA (2.0) BS03 CA N/A N/A N/A 32984811
    34775 6xi3:AAA (2.0) BS04 CA N/A N/A N/A 32984811
    34776 6xiy:A (2.307) BS02 CA ? N/A Q8IUN9 33724805
    34777 6xiy:A (2.307) BS03 CA ? N/A Q8IUN9 33724805
    34778 6xiy:A (2.307) BS04 CA ? N/A Q8IUN9 33724805
    34779 6xj3:A (1.85) BS02 CA 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    34780 6xj3:B (1.85) BS02 CA 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    34781 6xkd:A (3.2) BS03 CA 3.1.4.1
    3.6.1.9    		 GO:0000902 ... P06802 32726585
    34782 6xkd:B (3.2) BS03 CA 3.1.4.1
    3.6.1.9    		 GO:0000902 ... P06802 32726585
    34783 6xlr:A (1.23) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    34784 6xls:A (1.797) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    34785 6xlt:A (1.478) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    34786 6xof:A (1.5) BS01 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    34787 6xqf:A (1.58) BS03 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    34788 6xqg:A (2.15) BS03 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    34789 6xqh:A (1.57) BS04 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    34790 6xql:A (1.97) BS03 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    34791 6xqm:A (1.85) BS04 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    34792 6xqo:I (3.1) BS01 CA ? GO:0005509 ... Q9BPX6 32667285
    34793 6xqo:I (3.1) BS02 CA ? GO:0005509 ... Q9BPX6 32667285
    34794 6xqo:J (3.1) BS01 CA ? GO:0005509 ... Q8IYU8 32667285
    34795 6xqo:J (3.1) BS02 CA ? GO:0005509 ... Q8IYU8 32667285
    34796 6xrv:B (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34797 6xrv:C (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34798 6xrv:D (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34799 6xrv:E (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    34800 6xrv:F (1.43) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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