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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    34201 6vx7:D (2.36) BS01 CA ? GO:0005254 ... E1BF86 32251414
    34202 6vx7:E (2.36) BS01 CA ? GO:0005254 ... E1BF86 32251414
    34203 6vxy:A (1.398) BS02 CA 3.4.21.4 GO:0004175 ... P00760 32270580
    34204 6vza:A (1.47) BS01 CA N/A GO:0004497 ... N/A 33288748
    34205 6vzz:A (2.65) BS02 CA N/A GO:0004340 ... N/A 35604214
    34206 6vzz:A (2.65) BS03 CA N/A GO:0004340 ... N/A 35604214
    34207 6w0l:A (2.3) BS02 CA ? GO:0000122 ... P31947 32321809
    34208 6w12:A (2.0) BS01 CA ? N/A Q8IUN9 33724805
    34209 6w12:A (2.0) BS02 CA ? N/A Q8IUN9 33724805
    34210 6w12:A (2.0) BS03 CA ? N/A Q8IUN9 33724805
    34211 6w12:A (2.0) BS04 CA ? N/A Q8IUN9 33724805
    34212 6w25:A (2.75) BS02 CA ? GO:0004930 ... P32245
    Q9V2J8    		 32327598
    34213 6w35:A (1.98) BS06 CA ? GO:0003676 ... K7CID1 32584034
    34214 6w35:A (1.98) BS07 CA ? GO:0003676 ... K7CID1 32584034
    34215 6w7i:A (2.1) BS01 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    34216 6w7i:A (2.1) BS02 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    34217 6w7i:B (2.1) BS01 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    34218 6w7i:B (2.1) BS02 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    34219 6w98:A (2.9) BS01 CA N/A GO:0016740 ... N/A 32386575
    34220 6w98:A (2.9) BS02 CA N/A GO:0016740 ... N/A 32386575
    34221 6wb4:A (2.593) BS03 CA N/A GO:0016301 ... N/A 34819672
    34222 6wb4:A (2.593) BS04 CA N/A GO:0016301 ... N/A 34819672
    34223 6wb4:B (2.593) BS04 CA N/A GO:0016301 ... N/A 34819672
    34224 6wbw:A (1.46) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34225 6wbw:A (1.46) BS04 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34226 6wbw:B (1.46) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34227 6wbw:B (1.46) BS04 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34228 6wbw:C (1.46) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34229 6wbw:C (1.46) BS04 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34230 6wbx:A (3.5) BS01 CA ? GO:0016020 ... A0A418KZ72 32386575
    34231 6wbx:A (3.5) BS02 CA ? GO:0016020 ... A0A418KZ72 32386575
    34232 6wby:A (3.4) BS01 CA ? GO:0016020 ... A0A418KZ72 32386575
    34233 6wby:A (3.4) BS02 CA ? GO:0016020 ... A0A418KZ72 32386575
    34234 6wbz:A (1.32) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34235 6wbz:A (1.32) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34236 6wbz:B (1.32) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34237 6wbz:B (1.32) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34238 6wbz:C (1.32) BS02 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34239 6wbz:C (1.32) BS03 CA 3.5.1.-
    3.5.1.98    		 GO:0004407 ... Q92769 32331932
    34240 6wev:AbA (2.9) BS02 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P22413 32876064
    34241 6wfj:AcA (2.5) BS03 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P22413 32876064
    34242 6wfj:BcB (2.5) BS03 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P22413 32876064
    34243 6wh3:1 (2.96) BS01 CA N/A N/A N/A 32747554
    34244 6wh3:2 (2.96) BS01 CA N/A N/A N/A 32747554
    34245 6wh3:3 (2.96) BS01 CA N/A N/A N/A 32747554
    34246 6wh3:4 (2.96) BS01 CA N/A N/A N/A 32747554
    34247 6wh3:5 (2.96) BS01 CA N/A N/A N/A 32747554
    34248 6wh3:6 (2.96) BS01 CA N/A N/A N/A 32747554
    34249 6wh3:7 (2.96) BS01 CA N/A N/A N/A 32747554
    34250 6wh3:8 (2.96) BS01 CA N/A N/A N/A 32747554
    34251 6wh3:A (2.96) BS01 CA N/A N/A N/A 32747554
    34252 6wh3:B (2.96) BS01 CA N/A N/A N/A 32747554
    34253 6wh3:C (2.96) BS01 CA N/A N/A N/A 32747554
    34254 6wh3:D (2.96) BS01 CA N/A N/A N/A 32747554
    34255 6wh3:E (2.96) BS01 CA N/A N/A N/A 32747554
    34256 6wh3:F (2.96) BS01 CA N/A N/A N/A 32747554
    34257 6wh3:G (2.96) BS01 CA N/A N/A N/A 32747554
    34258 6wh3:H (2.96) BS01 CA N/A N/A N/A 32747554
    34259 6wh3:I (2.96) BS01 CA N/A N/A N/A 32747554
    34260 6wh3:J (2.96) BS01 CA N/A N/A N/A 32747554
    34261 6wh3:K (2.96) BS01 CA N/A N/A N/A 32747554
    34262 6wh3:L (2.96) BS01 CA N/A N/A N/A 32747554
    34263 6wh3:M (2.96) BS01 CA N/A N/A N/A 32747554
    34264 6wh3:N (2.96) BS01 CA N/A N/A N/A 32747554
    34265 6wh3:O (2.96) BS01 CA N/A N/A N/A 32747554
    34266 6wh3:P (2.96) BS01 CA N/A N/A N/A 32747554
    34267 6wh3:Q (2.96) BS01 CA N/A N/A N/A 32747554
    34268 6wh3:R (2.96) BS01 CA N/A N/A N/A 32747554
    34269 6wh3:S (2.96) BS01 CA N/A N/A N/A 32747554
    34270 6wh3:T (2.96) BS01 CA N/A N/A N/A 32747554
    34271 6wh3:U (2.96) BS01 CA N/A N/A N/A 32747554
    34272 6wh3:V (2.96) BS01 CA N/A N/A N/A 32747554
    34273 6wh3:W (2.96) BS01 CA N/A N/A N/A 32747554
    34274 6wh3:X (2.96) BS01 CA N/A N/A N/A 32747554
    34275 6wh3:Y (2.96) BS01 CA N/A N/A N/A 32747554
    34276 6wh3:Z (2.96) BS01 CA N/A N/A N/A 32747554
    34277 6wh3:a (2.96) BS01 CA N/A N/A N/A 32747554
    34278 6wh3:b (2.96) BS01 CA N/A N/A N/A 32747554
    34279 6wh3:c (2.96) BS01 CA N/A N/A N/A 32747554
    34280 6wh3:d (2.96) BS01 CA N/A N/A N/A 32747554
    34281 6wh3:e (2.96) BS01 CA N/A N/A N/A 32747554
    34282 6wh3:f (2.96) BS01 CA N/A N/A N/A 32747554
    34283 6wh3:g (2.96) BS01 CA N/A N/A N/A 32747554
    34284 6wh3:h (2.96) BS01 CA N/A N/A N/A 32747554
    34285 6wh3:i (2.96) BS01 CA N/A N/A N/A 32747554
    34286 6wh3:j (2.96) BS01 CA N/A N/A N/A 32747554
    34287 6wh3:k (2.96) BS01 CA N/A N/A N/A 32747554
    34288 6wh3:l (2.96) BS01 CA N/A N/A N/A 32747554
    34289 6wh3:m (2.96) BS01 CA N/A N/A N/A 32747554
    34290 6wh3:n (2.96) BS01 CA N/A N/A N/A 32747554
    34291 6wh3:o (2.96) BS01 CA N/A N/A N/A 32747554
    34292 6wh3:p (2.96) BS01 CA N/A N/A N/A 32747554
    34293 6wh3:q (2.96) BS01 CA N/A N/A N/A 32747554
    34294 6wh3:r (2.96) BS01 CA N/A N/A N/A 32747554
    34295 6wh3:s (2.96) BS01 CA N/A N/A N/A 32747554
    34296 6wh3:t (2.96) BS01 CA N/A N/A N/A 32747554
    34297 6wh3:u (2.96) BS01 CA N/A N/A N/A 32747554
    34298 6wh3:v (2.96) BS01 CA N/A N/A N/A 32747554
    34299 6wh3:w (2.96) BS01 CA N/A N/A N/A 32747554
    34300 6wh3:x (2.96) BS01 CA N/A N/A N/A 32747554
    34301 6wh3:y (2.96) BS01 CA N/A N/A N/A 32747554
    34302 6wh3:z (2.96) BS01 CA N/A N/A N/A 32747554
    34303 6whg:A (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    34304 6whg:A (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    34305 6whg:B (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    34306 6whg:B (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    34307 6whg:C (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    34308 6whg:C (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    34309 6whg:D (3.1) BS01 CA ? GO:0000324 ... Q12324 34453887
    34310 6whg:D (3.1) BS02 CA ? GO:0000324 ... Q12324 34453887
    34311 6wjj:A (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    34312 6wjj:A (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    34313 6wjj:B (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    34314 6wjj:B (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    34315 6wjj:C (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    34316 6wjj:C (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    34317 6wjj:D (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    34318 6wjj:D (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    34319 6wjj:E (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    34320 6wjj:E (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    34321 6wjj:F (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    34322 6wjj:F (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    34323 6wjj:G (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    34324 6wjj:G (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    34325 6wjj:H (3.8) BS01 CA ? GO:0005576 ... P13423 32521227
    34326 6wjj:H (3.8) BS02 CA ? GO:0005576 ... P13423 32521227
    34327 6wm1:C (1.8) BS02 CA ? N/A P62993 32916312
    34328 6wn7:A (1.25) BS01 CA ? GO:0005507 ... P33763 32979254
    34329 6wn7:A (1.25) BS02 CA ? GO:0005507 ... P33763 32979254
    34330 6wn7:A (1.25) BS03 CA ? GO:0005507 ... P33763 32979254
    34331 6wn7:A (1.25) BS04 CA ? GO:0005507 ... P33763 32979254
    34332 6wn7:B (1.25) BS01 CA ? GO:0005507 ... P33763 32979254
    34333 6wn7:B (1.25) BS02 CA ? GO:0005507 ... P33763 32979254
    34334 6wn7:B (1.25) BS03 CA ? GO:0005507 ... P33763 32979254
    34335 6wn7:C (1.25) BS01 CA ? GO:0005507 ... P33763 32979254
    34336 6wn7:C (1.25) BS02 CA ? GO:0005507 ... P33763 32979254
    34337 6wn7:D (1.25) BS01 CA ? GO:0005507 ... P33763 32979254
    34338 6wn7:D (1.25) BS02 CA ? GO:0005507 ... P33763 32979254
    34339 6wn7:E (1.25) BS01 CA ? GO:0005507 ... P33763 32979254
    34340 6wn7:E (1.25) BS02 CA ? GO:0005507 ... P33763 32979254
    34341 6wn7:F (1.25) BS01 CA ? GO:0005507 ... P33763 32979254
    34342 6wn7:F (1.25) BS02 CA ? GO:0005507 ... P33763 32979254
    34343 6wn7:F (1.25) BS03 CA ? GO:0005507 ... P33763 32979254
    34344 6wni:A (1.66) BS01 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34345 6wni:A (1.66) BS02 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34346 6wni:A (1.66) BS03 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34347 6wni:B (1.66) BS01 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34348 6wni:B (1.66) BS02 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34349 6wni:B (1.66) BS03 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34350 6wnu:A (1.88) BS01 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34351 6wnu:A (1.88) BS02 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34352 6wnu:A (1.88) BS03 CA 3.2.1.1 GO:0003824 ... U5CJP3 N/A
    34353 6wo2:A (2.0) BS02 CA ? N/A P62993 32916312
    34354 6wre:A (2.0) BS02 CA 3.1.13.-
    3.6.1.-    		 GO:0000166 ... O70348 31777937
    34355 6wrv:A (2.47) BS01 CA ? GO:0004998 ... P02786 33879614
    34356 6wrv:B (2.47) BS01 CA ? GO:0004998 ... P02786 33879614
    34357 6wrv:E (2.47) BS01 CA ? GO:0004998 ... P02786 33879614
    34358 6wrw:A (2.84) BS01 CA ? GO:0004998 ... P02786 33879614
    34359 6wrw:B (2.84) BS01 CA ? GO:0004998 ... P02786 33879614
    34360 6wrx:A (3.07) BS01 CA ? GO:0004998 ... P02786 33879614
    34361 6wrx:B (3.07) BS01 CA ? GO:0004998 ... P02786 33879614
    34362 6wu5:A (1.88) BS01 CA ? GO:0000287 ... Q96Q77 34089643
    34363 6wu5:B (1.88) BS01 CA ? GO:0000287 ... Q96Q77 34089643
    34364 6wu7:A (1.84) BS01 CA ? GO:0000287 ... Q96Q77 34089643
    34365 6wu7:A (1.84) BS02 CA ? GO:0000287 ... Q96Q77 34089643
    34366 6wu7:B (1.84) BS01 CA ? GO:0000287 ... Q96Q77 34089643
    34367 6wu7:B (1.84) BS02 CA ? GO:0000287 ... Q96Q77 34089643
    34368 6wu7:B (1.84) BS03 CA ? GO:0000287 ... Q96Q77 34089643
    34369 6wvw:C (2.11) BS01 CA ? GO:0000149 ... P60881 33147442
    34370 6ww1:A (2.05) BS01 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    34371 6ww1:A (2.05) BS02 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    34372 6ww1:B (2.05) BS01 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    34373 6ww1:B (2.05) BS02 CA 2.5.1.1
    2.5.1.10    		 GO:0004161 ... Q4QBL1 32584028
    34374 6wxe:a (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34375 6wxe:a (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34376 6wxe:a (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    34377 6wxe:b (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34378 6wxe:b (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34379 6wxe:b (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    34380 6wxe:c (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34381 6wxe:c (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34382 6wxe:c (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    34383 6wxe:d (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34384 6wxe:d (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34385 6wxe:d (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    34386 6wxe:e (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34387 6wxe:e (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34388 6wxe:e (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    34389 6wxe:f (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34390 6wxe:f (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34391 6wxe:f (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    34392 6wxe:g (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34393 6wxe:g (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34394 6wxe:g (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    34395 6wxe:h (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34396 6wxe:h (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34397 6wxe:h (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    34398 6wxe:i (3.4) BS01 CA ? GO:0019028 ... P12476 33442061
    34399 6wxe:i (3.4) BS02 CA ? GO:0019028 ... P12476 33442061
    34400 6wxe:i (3.4) BS03 CA ? GO:0019028 ... P12476 33442061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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