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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33801 6uzv:0 (3.1) BS09 CA ? GO:0005886 ... P37277 33077842
    33802 6uzv:L (3.1) BS09 CA ? GO:0005886 ... P37277 33077842
    33803 6uzv:l (3.1) BS08 CA ? GO:0005886 ... P37277 33077842
    33804 6uzz:B (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33805 6uzz:B (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    33806 6uzz:D (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33807 6uzz:D (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    33808 6uzz:F (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33809 6uzz:F (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    33810 6uzz:H (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33811 6uzz:H (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    33812 6v00:B (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33813 6v00:B (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    33814 6v00:E (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33815 6v00:E (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    33816 6v00:H (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33817 6v00:H (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    33818 6v00:K (3.1) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33819 6v00:K (3.1) BS02 CA ? GO:0000086 ... P0DP23 31883792
    33820 6v01:B (3.9) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33821 6v01:E (3.9) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33822 6v01:H (3.9) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33823 6v01:K (3.9) BS01 CA ? GO:0000086 ... P0DP23 31883792
    33824 6v0v:A (3.61) BS03 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 32015552
    33825 6v0v:A (3.61) BS04 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 32015552
    33826 6v1s:A (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    33827 6v1s:A (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    33828 6v1s:B (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    33829 6v1s:B (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    33830 6v1s:C (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    33831 6v1s:D (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    33832 6v1s:D (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    33833 6v1s:E (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    33834 6v1s:E (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    33835 6v1s:F (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    33836 6v1s:F (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    33837 6v1s:G (3.8) BS01 CA ? GO:0005576 ... A8DS70 32123082
    33838 6v1s:G (3.8) BS02 CA ? GO:0005576 ... A8DS70 32123082
    33839 6v22:A (3.2) BS02 CA ? GO:0005216 ... Q12791 31815672
    33840 6v22:A (3.2) BS03 CA ? GO:0005216 ... Q12791 31815672
    33841 6v22:B (3.2) BS02 CA ? GO:0005216 ... Q12791 31815672
    33842 6v22:B (3.2) BS03 CA ? GO:0005216 ... Q12791 31815672
    33843 6v22:C (3.2) BS02 CA ? GO:0005216 ... Q12791 31815672
    33844 6v22:C (3.2) BS03 CA ? GO:0005216 ... Q12791 31815672
    33845 6v22:D (3.2) BS02 CA ? GO:0005216 ... Q12791 31815672
    33846 6v22:D (3.2) BS03 CA ? GO:0005216 ... Q12791 31815672
    33847 6v2m:A (1.66) BS03 CA 4.1.1.49 GO:0000287 ... P22259 31911238
    33848 6v2n:A (1.65) BS01 CA 4.1.1.49 GO:0000287 ... P22259 31911238
    33849 6v38:A (3.8) BS01 CA ? GO:0005216 ... Q12791 31815672
    33850 6v38:A (3.8) BS02 CA ? GO:0005216 ... Q12791 31815672
    33851 6v38:B (3.8) BS01 CA ? GO:0005216 ... Q12791 31815672
    33852 6v38:B (3.8) BS02 CA ? GO:0005216 ... Q12791 31815672
    33853 6v38:C (3.8) BS01 CA ? GO:0005216 ... Q12791 31815672
    33854 6v38:C (3.8) BS02 CA ? GO:0005216 ... Q12791 31815672
    33855 6v38:D (3.8) BS01 CA ? GO:0005216 ... Q12791 31815672
    33856 6v38:D (3.8) BS02 CA ? GO:0005216 ... Q12791 31815672
    33857 6v4n:I (2.5) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    33858 6v4n:M (2.5) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    33859 6v4n:N (2.5) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    33860 6v4n:W (2.5) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    33861 6v4o:I (2.8) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    33862 6v4o:M (2.8) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    33863 6v4o:N (2.8) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    33864 6v4o:W (2.8) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    33865 6v4p:A (2.8) BS01 CA ? GO:0007155 ... P08514 31969014
    33866 6v4p:A (2.8) BS02 CA ? GO:0007155 ... P08514 31969014
    33867 6v4p:A (2.8) BS03 CA ? GO:0007155 ... P08514 31969014
    33868 6v4p:A (2.8) BS04 CA ? GO:0007155 ... P08514 31969014
    33869 6v4p:B (2.8) BS02 CA ? N/A P05106 31969014
    33870 6v4p:B (2.8) BS03 CA ? N/A P05106 31969014
    33871 6v4s:A (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    33872 6v4s:B (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    33873 6v4s:C (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    33874 6v4s:D (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    33875 6v4s:E (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    33876 6v55:A (2.38) BS02 CA ? N/A C6KFA3 31924782
    33877 6v5a:A (2.0) BS01 CA ? GO:0006813 ... Q12791 32513714
    33878 6v5b:A (3.7) BS04 CA 3.1.26.3 GO:0003723 ... Q9NRR4 32220646
    33879 6v72:A (1.5) BS01 CA 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    33880 6v72:A (1.5) BS02 CA 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    33881 6v72:A (1.5) BS03 CA 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    33882 6v7j:A (2.0) BS02 CA ? N/A P50477 31983433
    33883 6v7j:A (2.0) BS03 CA ? N/A P50477 31983433
    33884 6v7j:C (2.0) BS02 CA ? N/A P50477 31983433
    33885 6v81:A (2.957) BS01 CA ? GO:0009279 ... P76115 32355044
    33886 6v8q:A (2.69958) BS01 CA ? GO:0005886 ... P40709 32047135
    33887 6v8r:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    33888 6v8r:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    33889 6v93:A (3.1) BS04 CA 2.7.7.7 GO:0000166 ... P14284 32807989
    33890 6v93:A (3.1) BS05 CA 2.7.7.7 GO:0000166 ... P14284 32807989
    33891 6v95:A (1.78) BS03 CA ? GO:0030246 ... P02872 33135679
    33892 6v95:B (1.78) BS03 CA ? GO:0030246 ... P02872 33135679
    33893 6v95:C (1.78) BS03 CA ? GO:0030246 ... P02872 33135679
    33894 6v95:D (1.78) BS03 CA ? GO:0030246 ... P02872 33135679
    33895 6v98:A (1.8) BS01 CA ? GO:0003674 ... Q9KMN9 32094588
    33896 6v98:A (1.8) BS02 CA ? GO:0003674 ... Q9KMN9 32094588
    33897 6v9v:A (2.6) BS02 CA ? GO:0005216 ... O75762 32641835
    33898 6v9v:B (2.6) BS02 CA ? GO:0005216 ... O75762 32641835
    33899 6v9v:C (2.6) BS02 CA ? GO:0005216 ... O75762 32641835
    33900 6v9v:D (2.6) BS02 CA ? GO:0005216 ... O75762 32641835
    33901 6v9w:A (3.1) BS01 CA ? GO:0005216 ... O75762 32641835
    33902 6v9w:B (3.1) BS01 CA ? GO:0005216 ... O75762 32641835
    33903 6v9w:C (3.1) BS01 CA ? GO:0005216 ... O75762 32641835
    33904 6v9w:D (3.1) BS01 CA ? GO:0005216 ... O75762 32641835
    33905 6vat:B (2.35) BS02 CA ? N/A P40709 33082366
    33906 6vat:C (2.35) BS03 CA ? N/A P40709 33082366
    33907 6vav:A (1.85) BS03 CA ? GO:0030246 ... P02872 33135679
    33908 6vav:B (1.85) BS03 CA ? GO:0030246 ... P02872 33135679
    33909 6vav:D (1.85) BS03 CA ? GO:0030246 ... P02872 33135679
    33910 6vaw:A (1.75) BS03 CA ? GO:0030246 ... P02872 33135679
    33911 6vaw:B (1.75) BS03 CA ? GO:0030246 ... P02872 33135679
    33912 6vaw:C (1.75) BS03 CA ? GO:0030246 ... P02872 33135679
    33913 6vaw:D (1.75) BS03 CA ? GO:0030246 ... P02872 33135679
    33914 6vb8:A (2.2) BS01 CA ? GO:0005537 ... P55915 N/A
    33915 6vbf:A (1.85) BS01 CA N/A GO:0000160 ... N/A N/A
    33916 6vbf:A (1.85) BS02 CA N/A GO:0000160 ... N/A N/A
    33917 6vbf:B (1.85) BS01 CA N/A GO:0000160 ... N/A N/A
    33918 6vbf:B (1.85) BS02 CA N/A GO:0000160 ... N/A N/A
    33919 6vbu:2 (3.1) BS01 CA ? GO:0005737 ... Q32L13 31939736
    33920 6vbu:2 (3.1) BS02 CA ? GO:0005737 ... Q32L13 31939736
    33921 6vbv:2 (3.5) BS01 CA ? GO:0005737 ... Q32L13 31939736
    33922 6vbv:2 (3.5) BS02 CA ? GO:0005737 ... Q32L13 31939736
    33923 6vc3:A (1.95) BS03 CA ? GO:0030246 ... P02872 33135679
    33924 6vc3:B (1.95) BS03 CA ? GO:0030246 ... P02872 33135679
    33925 6vc3:C (1.95) BS02 CA ? GO:0030246 ... P02872 33135679
    33926 6vc3:D (1.95) BS03 CA ? GO:0030246 ... P02872 33135679
    33927 6vc4:A (1.9) BS03 CA ? GO:0030246 ... P02872 33135679
    33928 6vc4:B (1.9) BS03 CA ? GO:0030246 ... P02872 33135679
    33929 6vc4:C (1.9) BS03 CA ? GO:0030246 ... P02872 33135679
    33930 6vc4:D (1.9) BS03 CA ? GO:0030246 ... P02872 33135679
    33931 6vel:C (2.65) BS01 CA ? GO:0000794 ... P12830
    Q12306    		 36157596
    33932 6vel:C (2.65) BS02 CA ? GO:0000794 ... P12830
    Q12306    		 36157596
    33933 6vel:C (2.65) BS03 CA ? GO:0000794 ... P12830
    Q12306    		 36157596
    33934 6vez:A (1.875) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    33935 6vez:A (1.875) BS06 CA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    33936 6vf8:A (1.7) BS04 CA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    33937 6vf8:A (1.7) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    33938 6vfp:A (3.2) BS01 CA ? GO:0005509 ... Q08174 32101743
    33939 6vfp:A (3.2) BS02 CA ? GO:0005509 ... Q08174 32101743
    33940 6vfp:A (3.2) BS03 CA ? GO:0005509 ... Q08174 32101743
    33941 6vfp:A (3.2) BS04 CA ? GO:0005509 ... Q08174 32101743
    33942 6vfp:A (3.2) BS05 CA ? GO:0005509 ... Q08174 32101743
    33943 6vfp:A (3.2) BS06 CA ? GO:0005509 ... Q08174 32101743
    33944 6vfp:A (3.2) BS07 CA ? GO:0005509 ... Q08174 32101743
    33945 6vfp:A (3.2) BS08 CA ? GO:0005509 ... Q08174 32101743
    33946 6vfp:A (3.2) BS09 CA ? GO:0005509 ... Q08174 32101743
    33947 6vfq:A (2.3) BS01 CA ? GO:0005509 ... Q9P2E7 32101743
    33948 6vfq:A (2.3) BS02 CA ? GO:0005509 ... Q9P2E7 32101743
    33949 6vfq:A (2.3) BS03 CA ? GO:0005509 ... Q9P2E7 32101743
    33950 6vfq:A (2.3) BS04 CA ? GO:0005509 ... Q9P2E7 32101743
    33951 6vfq:A (2.3) BS05 CA ? GO:0005509 ... Q9P2E7 32101743
    33952 6vfq:A (2.3) BS06 CA ? GO:0005509 ... Q9P2E7 32101743
    33953 6vfq:A (2.3) BS07 CA ? GO:0005509 ... Q9P2E7 32101743
    33954 6vfq:A (2.3) BS08 CA ? GO:0005509 ... Q9P2E7 32101743
    33955 6vfq:A (2.3) BS09 CA ? GO:0005509 ... Q9P2E7 32101743
    33956 6vfr:A (2.79) BS01 CA ? GO:0005509 ... Q9HCL0 32101743
    33957 6vfr:A (2.79) BS02 CA ? GO:0005509 ... Q9HCL0 32101743
    33958 6vfr:A (2.79) BS03 CA ? GO:0005509 ... Q9HCL0 32101743
    33959 6vfr:A (2.79) BS04 CA ? GO:0005509 ... Q9HCL0 32101743
    33960 6vfr:A (2.79) BS05 CA ? GO:0005509 ... Q9HCL0 32101743
    33961 6vfr:A (2.79) BS06 CA ? GO:0005509 ... Q9HCL0 32101743
    33962 6vfr:A (2.79) BS07 CA ? GO:0005509 ... Q9HCL0 32101743
    33963 6vfr:A (2.79) BS08 CA ? GO:0005509 ... Q9HCL0 32101743
    33964 6vfr:A (2.79) BS09 CA ? GO:0005509 ... Q9HCL0 32101743
    33965 6vfr:B (2.79) BS01 CA ? GO:0005509 ... Q9HCL0 32101743
    33966 6vfr:B (2.79) BS02 CA ? GO:0005509 ... Q9HCL0 32101743
    33967 6vfr:B (2.79) BS03 CA ? GO:0005509 ... Q9HCL0 32101743
    33968 6vfr:B (2.79) BS04 CA ? GO:0005509 ... Q9HCL0 32101743
    33969 6vfr:B (2.79) BS05 CA ? GO:0005509 ... Q9HCL0 32101743
    33970 6vfr:B (2.79) BS06 CA ? GO:0005509 ... Q9HCL0 32101743
    33971 6vfr:B (2.79) BS07 CA ? GO:0005509 ... Q9HCL0 32101743
    33972 6vfr:B (2.79) BS08 CA ? GO:0005509 ... Q9HCL0 32101743
    33973 6vfr:B (2.79) BS09 CA ? GO:0005509 ... Q9HCL0 32101743
    33974 6vft:A (3.71) BS01 CA ? GO:0005509 ... O14917 32101743
    33975 6vft:A (3.71) BS02 CA ? GO:0005509 ... O14917 32101743
    33976 6vft:A (3.71) BS03 CA ? GO:0005509 ... O14917 32101743
    33977 6vft:A (3.71) BS04 CA ? GO:0005509 ... O14917 32101743
    33978 6vft:A (3.71) BS05 CA ? GO:0005509 ... O14917 32101743
    33979 6vft:A (3.71) BS06 CA ? GO:0005509 ... O14917 32101743
    33980 6vft:A (3.71) BS07 CA ? GO:0005509 ... O14917 32101743
    33981 6vft:A (3.71) BS08 CA ? GO:0005509 ... O14917 32101743
    33982 6vft:A (3.71) BS09 CA ? GO:0005509 ... O14917 32101743
    33983 6vft:A (3.71) BS11 CA ? GO:0005509 ... O14917 32101743
    33984 6vft:B (3.71) BS01 CA ? GO:0005509 ... O14917 32101743
    33985 6vft:B (3.71) BS02 CA ? GO:0005509 ... O14917 32101743
    33986 6vft:B (3.71) BS03 CA ? GO:0005509 ... O14917 32101743
    33987 6vft:B (3.71) BS04 CA ? GO:0005509 ... O14917 32101743
    33988 6vft:B (3.71) BS05 CA ? GO:0005509 ... O14917 32101743
    33989 6vft:B (3.71) BS06 CA ? GO:0005509 ... O14917 32101743
    33990 6vft:B (3.71) BS07 CA ? GO:0005509 ... O14917 32101743
    33991 6vft:B (3.71) BS08 CA ? GO:0005509 ... O14917 32101743
    33992 6vft:B (3.71) BS09 CA ? GO:0005509 ... O14917 32101743
    33993 6vft:B (3.71) BS11 CA ? GO:0005509 ... O14917 32101743
    33994 6vft:C (3.71) BS01 CA ? GO:0005509 ... O14917 32101743
    33995 6vft:C (3.71) BS02 CA ? GO:0005509 ... O14917 32101743
    33996 6vft:C (3.71) BS03 CA ? GO:0005509 ... O14917 32101743
    33997 6vft:C (3.71) BS04 CA ? GO:0005509 ... O14917 32101743
    33998 6vft:C (3.71) BS05 CA ? GO:0005509 ... O14917 32101743
    33999 6vft:C (3.71) BS06 CA ? GO:0005509 ... O14917 32101743
    34000 6vft:C (3.71) BS07 CA ? GO:0005509 ... O14917 32101743
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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