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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33601 6uwi:i (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    33602 6uwi:i (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    33603 6uwi:i (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    33604 6uwi:i (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    33605 6uwi:i (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    33606 6uwi:i (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    33607 6uwi:j (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    33608 6uwi:j (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    33609 6uwi:j (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    33610 6uwi:j (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    33611 6uwi:j (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    33612 6uwi:j (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    33613 6uwi:k (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    33614 6uwi:k (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    33615 6uwi:k (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    33616 6uwi:k (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    33617 6uwi:k (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    33618 6uwi:k (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    33619 6uwi:l (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    33620 6uwi:l (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    33621 6uwi:l (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    33622 6uwi:l (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    33623 6uwi:l (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    33624 6uwi:l (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    33625 6uwi:m (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    33626 6uwi:m (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    33627 6uwi:m (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    33628 6uwi:m (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    33629 6uwi:m (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    33630 6uwi:m (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    33631 6uwi:n (3.7) BS01 CA ? GO:0005576 ... O32739 31896582
    33632 6uwi:n (3.7) BS02 CA ? GO:0005576 ... O32739 31896582
    33633 6uwi:n (3.7) BS03 CA ? GO:0005576 ... O32739 31896582
    33634 6uwi:n (3.7) BS04 CA ? GO:0005576 ... O32739 31896582
    33635 6uwi:n (3.7) BS05 CA ? GO:0005576 ... O32739 31896582
    33636 6uwi:n (3.7) BS06 CA ? GO:0005576 ... O32739 31896582
    33637 6uwj:A (1.852) BS03 CA N/A GO:0004519 ... N/A 32359399
    33638 6uwj:A (1.852) BS04 CA N/A GO:0004519 ... N/A 32359399
    33639 6uwj:A (1.852) BS05 CA N/A GO:0004519 ... N/A 32359399
    33640 6uwk:A (2.533) BS03 CA N/A GO:0004519 ... N/A 32359399
    33641 6uwk:A (2.533) BS04 CA N/A GO:0004519 ... N/A 32359399
    33642 6uwk:A (2.533) BS05 CA N/A GO:0004519 ... N/A 32359399
    33643 6uwk:A (2.533) BS06 CA N/A GO:0004519 ... N/A 32359399
    33644 6uwk:A (2.533) BS07 CA N/A GO:0004519 ... N/A 32359399
    33645 6uwn:A (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33646 6uwn:A (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33647 6uwn:A (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33648 6uwn:B (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33649 6uwn:B (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33650 6uwn:B (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33651 6uwn:C (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33652 6uwn:C (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33653 6uwn:C (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33654 6uwn:D (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33655 6uwn:D (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33656 6uwn:D (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33657 6uwn:E (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33658 6uwn:E (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33659 6uwn:E (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33660 6uwn:F (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33661 6uwn:F (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33662 6uwn:G (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33663 6uwn:G (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33664 6uwn:G (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33665 6uwn:H (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33666 6uwn:H (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33667 6uwr:A (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33668 6uwr:A (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33669 6uwr:A (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33670 6uwr:B (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33671 6uwr:B (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33672 6uwr:B (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33673 6uwr:C (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33674 6uwr:C (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33675 6uwr:C (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33676 6uwr:D (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33677 6uwr:D (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33678 6uwr:D (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33679 6uwr:E (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33680 6uwr:E (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33681 6uwr:E (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33682 6uwr:F (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33683 6uwr:F (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33684 6uwr:F (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33685 6uwr:G (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33686 6uwr:G (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33687 6uwr:G (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33688 6uwr:H (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33689 6uwr:H (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33690 6uwr:H (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33691 6uwr:I (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33692 6uwr:I (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33693 6uwr:I (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33694 6uwr:J (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33695 6uwr:J (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33696 6uwr:J (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33697 6uwr:K (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33698 6uwr:K (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33699 6uwr:K (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33700 6uwr:L (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33701 6uwr:L (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33702 6uwr:L (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33703 6uwr:M (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33704 6uwr:M (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33705 6uwr:M (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33706 6uwr:N (2.8) BS01 CA ? GO:0005576 ... O32739 31896582
    33707 6uwr:N (2.8) BS02 CA ? GO:0005576 ... O32739 31896582
    33708 6uwr:N (2.8) BS03 CA ? GO:0005576 ... O32739 31896582
    33709 6uwt:A (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33710 6uwt:A (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33711 6uwt:B (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33712 6uwt:B (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33713 6uwt:C (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33714 6uwt:C (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33715 6uwt:D (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33716 6uwt:D (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33717 6uwt:E (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33718 6uwt:E (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33719 6uwt:F (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33720 6uwt:F (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33721 6uwt:G (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33722 6uwt:G (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33723 6uwt:H (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33724 6uwt:H (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33725 6uwt:I (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33726 6uwt:I (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33727 6uwt:J (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33728 6uwt:J (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33729 6uwt:K (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33730 6uwt:K (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33731 6uwt:L (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33732 6uwt:L (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33733 6uwt:M (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33734 6uwt:M (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33735 6uwt:N (3.1) BS01 CA ? GO:0005576 ... O32739 31896582
    33736 6uwt:N (3.1) BS02 CA ? GO:0005576 ... O32739 31896582
    33737 6ux4:A (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33738 6ux4:A (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33739 6ux4:A (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33740 6ux4:B (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33741 6ux4:B (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33742 6ux4:C (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33743 6ux4:C (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33744 6ux4:C (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33745 6ux4:D (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33746 6ux4:D (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33747 6ux4:D (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33748 6ux4:E (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33749 6ux4:E (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33750 6ux4:E (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33751 6ux4:F (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33752 6ux4:F (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33753 6ux4:F (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33754 6ux4:G (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33755 6ux4:G (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33756 6ux4:G (3.5) BS03 CA ? GO:0005886 ... O27564 32269335
    33757 6ux4:H (3.5) BS01 CA ? GO:0005886 ... O27564 32269335
    33758 6ux4:H (3.5) BS02 CA ? GO:0005886 ... O27564 32269335
    33759 6uzb:A (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    33760 6uzb:A (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    33761 6uzb:B (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    33762 6uzb:B (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    33763 6uzb:C (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    33764 6uzb:C (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    33765 6uzb:D (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    33766 6uzb:D (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    33767 6uzb:E (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    33768 6uzb:E (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    33769 6uzb:F (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    33770 6uzb:F (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    33771 6uzb:G (3.2) BS01 CA ? GO:0005515 ... P13423 32047164
    33772 6uzb:G (3.2) BS02 CA ? GO:0005515 ... P13423 32047164
    33773 6uzd:A (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33774 6uzd:A (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33775 6uzd:B (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33776 6uzd:B (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33777 6uzd:C (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33778 6uzd:C (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33779 6uzd:D (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33780 6uzd:D (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33781 6uzd:E (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33782 6uzd:E (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33783 6uzd:F (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33784 6uzd:F (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33785 6uzd:G (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33786 6uzd:G (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33787 6uze:A (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33788 6uze:A (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33789 6uze:B (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33790 6uze:B (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33791 6uze:C (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33792 6uze:C (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33793 6uze:D (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33794 6uze:D (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33795 6uze:E (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33796 6uze:E (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33797 6uze:F (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33798 6uze:F (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    33799 6uze:G (3.4) BS01 CA ? GO:0005515 ... P13423 32047164
    33800 6uze:G (3.4) BS02 CA ? GO:0005515 ... P13423 32047164
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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