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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33201 6twx:A (2.3) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33202 6twx:A (2.3) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33203 6twx:A (2.3) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33204 6twx:A (2.3) BS06 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33205 6twx:B (2.3) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33206 6twx:B (2.3) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33207 6twx:B (2.3) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33208 6twx:B (2.3) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33209 6twx:B (2.3) BS06 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33210 6twx:B (2.3) BS07 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33211 6twy:A (2.3) BS01 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33212 6twy:A (2.3) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33213 6twy:A (2.3) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33214 6twy:A (2.3) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33215 6twy:B (2.3) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33216 6twy:B (2.3) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33217 6twy:B (2.3) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33218 6twy:B (2.3) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7    		 32294469
    33219 6txg:A (1.372) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32266561
    33220 6tz6:B (2.55) BS01 CA ? GO:0005509 ... C4YS24 31537789
    33221 6tz6:B (2.55) BS02 CA ? GO:0005509 ... C4YS24 31537789
    33222 6tz6:B (2.55) BS03 CA ? GO:0005509 ... C4YS24 31537789
    33223 6tz6:E (2.55) BS01 CA ? GO:0005509 ... C4YS24 31537789
    33224 6tz6:E (2.55) BS02 CA ? GO:0005509 ... C4YS24 31537789
    33225 6tz6:E (2.55) BS03 CA ? GO:0005509 ... C4YS24 31537789
    33226 6tz6:E (2.55) BS04 CA ? GO:0005509 ... C4YS24 31537789
    33227 6tz7:B (2.5) BS01 CA ? GO:0000747 ... Q4WDF2 31537789
    33228 6tz7:B (2.5) BS02 CA ? GO:0000747 ... Q4WDF2 31537789
    33229 6tz7:B (2.5) BS03 CA ? GO:0000747 ... Q4WDF2 31537789
    33230 6tz8:B (3.3) BS01 CA ? GO:0005509 ... J9VL81 31537789
    33231 6tz8:B (3.3) BS02 CA ? GO:0005509 ... J9VL81 31537789
    33232 6tz8:B (3.3) BS03 CA ? GO:0005509 ... J9VL81 31537789
    33233 6tz8:B (3.3) BS04 CA ? GO:0005509 ... J9VL81 31537789
    33234 6tz8:E (3.3) BS01 CA ? GO:0005509 ... J9VL81 31537789
    33235 6tz8:E (3.3) BS02 CA ? GO:0005509 ... J9VL81 31537789
    33236 6tz8:E (3.3) BS03 CA ? GO:0005509 ... J9VL81 31537789
    33237 6tz8:E (3.3) BS04 CA ? GO:0005509 ... J9VL81 31537789
    33238 6tzk:A (1.852) BS02 CA ? GO:0019867 ... P37650 31604608
    33239 6tzy:A (3.0) BS01 CA ? GO:0008195 ... I7MFJ3 N/A
    33240 6tzy:B (3.0) BS01 CA ? GO:0008195 ... I7MFJ3 N/A
    33241 6tzy:B (3.0) BS02 CA ? GO:0008195 ... I7MFJ3 N/A
    33242 6tzy:C (3.0) BS01 CA ? GO:0008195 ... I7MFJ3 N/A
    33243 6tzy:D (3.0) BS01 CA ? GO:0008195 ... I7MFJ3 N/A
    33244 6u0w:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 31692475
    33245 6u0x:A (1.86) BS01 CA 3.1.31.1 GO:0003676 ... P00644 31692475
    33246 6u1a:A (1.09) BS01 CA N/A GO:0006091 ... N/A 32243936
    33247 6u22:A (1.42) BS02 CA 3.4.21.4 GO:0004175 ... P00760 32270580
    33248 6u2f:A (2.94) BS02 CA 3.4.21.- GO:0004252 ... Q8NBP7 31962046
    33249 6u2m:A (2.0) BS02 CA N/A GO:0003824 ... N/A 33795886
    33250 6u2m:A (2.0) BS03 CA N/A GO:0003824 ... N/A 33795886
    33251 6u2m:A (2.0) BS04 CA N/A GO:0003824 ... N/A 33795886
    33252 6u2m:A (2.0) BS05 CA N/A GO:0003824 ... N/A 33795886
    33253 6u2m:C (2.0) BS02 CA N/A GO:0003824 ... N/A 33795886
    33254 6u2m:C (2.0) BS03 CA N/A GO:0003824 ... N/A 33795886
    33255 6u2m:C (2.0) BS04 CA N/A GO:0003824 ... N/A 33795886
    33256 6u2m:C (2.0) BS05 CA N/A GO:0003824 ... N/A 33795886
    33257 6u39:A (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33258 6u39:A (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33259 6u39:A (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33260 6u39:C (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33261 6u39:C (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33262 6u39:C (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33263 6u39:E (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33264 6u39:E (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33265 6u39:E (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33266 6u39:G (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33267 6u39:G (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33268 6u39:G (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33269 6u39:I (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33270 6u39:I (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33271 6u39:K (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33272 6u39:K (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33273 6u39:K (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33274 6u39:M (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33275 6u39:M (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33276 6u39:M (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33277 6u39:O (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33278 6u39:O (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33279 6u39:O (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33280 6u39:Q (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33281 6u39:Q (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33282 6u39:Q (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33283 6u39:S (2.4) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33284 6u39:S (2.4) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33285 6u39:S (2.4) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33286 6u3a:A (1.65) BS02 CA ? GO:0000086 ... P0DP23 32012279
    33287 6u3a:A (1.65) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33288 6u3a:A (1.65) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33289 6u3a:B (1.65) BS02 CA ? GO:0000086 ... P0DP23 32012279
    33290 6u3a:B (1.65) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33291 6u3a:B (1.65) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33292 6u3a:B (1.65) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33293 6u3b:A (1.7) BS01 CA ? GO:0000086 ... P0DP23 32012279
    33294 6u3b:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 32012279
    33295 6u3b:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33296 6u3b:A (1.7) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33297 6u3b:B (1.7) BS01 CA ? N/A Q13936 32012279
    33298 6u3d:A (1.75) BS02 CA ? GO:0000086 ... P0DP23 32012279
    33299 6u3d:A (1.75) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33300 6u3d:A (1.75) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33301 6u3d:A (1.75) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33302 6u3d:B (1.75) BS02 CA ? GO:0000086 ... P0DP23 32012279
    33303 6u3d:B (1.75) BS03 CA ? GO:0000086 ... P0DP23 32012279
    33304 6u3d:B (1.75) BS04 CA ? GO:0000086 ... P0DP23 32012279
    33305 6u3d:B (1.75) BS05 CA ? GO:0000086 ... P0DP23 32012279
    33306 6u3i:A (2.9) BS02 CA 3.4.21.- GO:0004252 ... Q8NBP7 31962046
    33307 6u5n:A (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    33308 6u5n:A (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    33309 6u5n:A (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    33310 6u5n:B (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    33311 6u5n:B (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    33312 6u5n:B (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    33313 6u5n:C (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    33314 6u5n:C (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    33315 6u5n:C (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    33316 6u5n:D (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    33317 6u5n:D (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    33318 6u5n:D (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    33319 6u5n:E (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    33320 6u5n:E (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    33321 6u5n:E (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    33322 6u5n:F (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    33323 6u5n:F (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    33324 6u5n:F (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    33325 6u5n:G (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    33326 6u5n:G (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    33327 6u5n:G (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    33328 6u5n:H (3.2) BS01 CA ? GO:0005886 ... O27564 32269335
    33329 6u5n:H (3.2) BS02 CA ? GO:0005886 ... O27564 32269335
    33330 6u5n:H (3.2) BS03 CA ? GO:0005886 ... O27564 32269335
    33331 6u5p:A (3.3) BS01 CA ? GO:0005886 ... O27564 32269335
    33332 6u5p:A (3.3) BS02 CA ? GO:0005886 ... O27564 32269335
    33333 6u5p:A (3.3) BS03 CA ? GO:0005886 ... O27564 32269335
    33334 6u5p:B (3.3) BS01 CA ? GO:0005886 ... O27564 32269335
    33335 6u5p:B (3.3) BS02 CA ? GO:0005886 ... O27564 32269335
    33336 6u5p:B (3.3) BS03 CA ? GO:0005886 ... O27564 32269335
    33337 6u5p:C (3.3) BS01 CA ? GO:0005886 ... O27564 32269335
    33338 6u5p:C (3.3) BS02 CA ? GO:0005886 ... O27564 32269335
    33339 6u5p:C (3.3) BS03 CA ? GO:0005886 ... O27564 32269335
    33340 6u5p:D (3.3) BS01 CA ? GO:0005886 ... O27564 32269335
    33341 6u5p:D (3.3) BS02 CA ? GO:0005886 ... O27564 32269335
    33342 6u5p:D (3.3) BS03 CA ? GO:0005886 ... O27564 32269335
    33343 6u5p:E (3.3) BS01 CA ? GO:0005886 ... O27564 32269335
    33344 6u5p:E (3.3) BS02 CA ? GO:0005886 ... O27564 32269335
    33345 6u5p:E (3.3) BS03 CA ? GO:0005886 ... O27564 32269335
    33346 6u5p:F (3.3) BS01 CA ? GO:0005886 ... O27564 32269335
    33347 6u5p:F (3.3) BS02 CA ? GO:0005886 ... O27564 32269335
    33348 6u5p:F (3.3) BS03 CA ? GO:0005886 ... O27564 32269335
    33349 6u5p:G (3.3) BS01 CA ? GO:0005886 ... O27564 32269335
    33350 6u5p:G (3.3) BS02 CA ? GO:0005886 ... O27564 32269335
    33351 6u5p:G (3.3) BS03 CA ? GO:0005886 ... O27564 32269335
    33352 6u5p:H (3.3) BS01 CA ? GO:0005886 ... O27564 32269335
    33353 6u5p:H (3.3) BS02 CA ? GO:0005886 ... O27564 32269335
    33354 6u5p:H (3.3) BS03 CA ? GO:0005886 ... O27564 32269335
    33355 6u5r:A (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    33356 6u5r:B (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    33357 6u5r:C (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    33358 6u5r:D (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    33359 6u5r:E (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    33360 6u5r:F (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    33361 6u5r:G (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    33362 6u5r:H (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    33363 6u66:A (0.99) BS01 CA ? N/A Q15848 31915248
    33364 6u66:A (0.99) BS02 CA ? N/A Q15848 31915248
    33365 6u66:B (0.99) BS01 CA ? N/A Q15848 31915248
    33366 6u66:B (0.99) BS02 CA ? N/A Q15848 31915248
    33367 6u66:C (0.99) BS01 CA ? N/A Q15848 31915248
    33368 6u66:C (0.99) BS02 CA ? N/A Q15848 31915248
    33369 6u7j:A (2.2) BS01 CA 3.2.1.31 GO:0004553 ... A0A1C5YG41 31636122
    33370 6u7j:C (2.2) BS01 CA 3.2.1.31 GO:0004553 ... A0A1C5YG41 31636122
    33371 6u7j:D (2.2) BS01 CA 3.2.1.31 GO:0004553 ... A0A1C5YG41 31636122
    33372 6u7l:A (2.75) BS01 CA 4.2.1.42 GO:0008198 ... P39829 31811683
    33373 6u7l:B (2.75) BS01 CA 4.2.1.42 GO:0008198 ... P39829 31811683
    33374 6u7l:C (2.75) BS01 CA 4.2.1.42 GO:0008198 ... P39829 31811683
    33375 6u7l:D (2.75) BS01 CA 4.2.1.42 GO:0008198 ... P39829 31811683
    33376 6u7t:A (2.0) BS04 CA 3.2.2.31 GO:0000701 ... P83847 31829624
    33377 6u7t:A (2.0) BS05 CA 3.2.2.31 GO:0000701 ... P83847 31829624
    33378 6uax:A (1.3) BS01 CA ? GO:0009277 ... A9GMG4 32451508
    33379 6uax:B (1.3) BS01 CA ? GO:0009277 ... A9GMG4 32451508
    33380 6ubv:A (2.7) BS01 CA ? N/A P11657 N/A
    33381 6ubv:B (2.7) BS01 CA ? N/A P11657 N/A
    33382 6ubv:C (2.7) BS01 CA ? N/A P11657 N/A
    33383 6ubv:D (2.7) BS01 CA ? N/A P11657 N/A
    33384 6ueh:A (1.849) BS01 CA N/A GO:0004553 ... N/A 32139511
    33385 6uff:A (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    33386 6uff:B (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    33387 6uff:C (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    33388 6uff:D (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    33389 6uff:E (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    33390 6uff:F (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    33391 6uff:G (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    33392 6uff:H (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    33393 6uja:A (3.3) BS01 CA ? GO:0001525 ... P06756 31955848
    33394 6uja:A (3.3) BS02 CA ? GO:0001525 ... P06756 31955848
    33395 6uja:A (3.3) BS03 CA ? GO:0001525 ... P06756 31955848
    33396 6uja:A (3.3) BS04 CA ? GO:0001525 ... P06756 31955848
    33397 6uja:B (3.3) BS01 CA ? GO:0001570 ... P26012 31955848
    33398 6ujb:A (3.51) BS01 CA ? GO:0001525 ... P06756 31955848
    33399 6ujb:A (3.51) BS02 CA ? GO:0001525 ... P06756 31955848
    33400 6ujb:A (3.51) BS03 CA ? GO:0001525 ... P06756 31955848
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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