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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    32801 6sdk:A (1.81) BS03 CA ? GO:0003677 ... P26497 31649139
    32802 6sdk:B (1.81) BS03 CA ? GO:0003677 ... P26497 31649139
    32803 6sdk:B (1.81) BS04 CA ? GO:0003677 ... P26497 31649139
    32804 6sdk:C (1.81) BS02 CA ? GO:0003677 ... P26497 31649139
    32805 6sdk:C (1.81) BS03 CA ? GO:0003677 ... P26497 31649139
    32806 6sdk:D (1.81) BS03 CA ? GO:0003677 ... P26497 31649139
    32807 6sdk:D (1.81) BS04 CA ? GO:0003677 ... P26497 31649139
    32808 6sei:B (2.69) BS01 CA ? GO:0005634 ... G2RCY5 31584081
    32809 6sei:C (2.69) BS04 CA 3.1.-.- GO:0000724 ... G2QV68 31584081
    32810 6sel:A (2.2) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    32811 6sel:A (2.2) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    32812 6sel:A (2.2) BS06 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    32813 6sel:A (2.2) BS07 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    32814 6sfc:A (2.0) BS01 CA ? N/A O75530 31525019
    32815 6sg8:A (2.5) BS01 CA ? GO:0004308 ... W5SB61 31591233
    32816 6sg8:B (2.5) BS01 CA ? GO:0004308 ... W5SB61 31591233
    32817 6sgp:A (1.58) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 38224368
    32818 6si9:A (1.9) BS03 CA ? GO:0003924 ... P0A031 31997533
    32819 6sir:A (1.7) BS01 CA ? GO:0009190 ... A0A1Y2HEJ3 31808997
    32820 6sir:B (1.7) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 31808997
    32821 6sir:C (1.7) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 31808997
    32822 6sir:D (1.7) BS01 CA ? GO:0009190 ... A0A1Y2HEJ3 31808997
    32823 6sit:D (4.5) BS01 CA ? GO:0005509 ... Q14126 31797817
    32824 6sit:D (4.5) BS02 CA ? GO:0005509 ... Q14126 31797817
    32825 6sit:D (4.5) BS03 CA ? GO:0005509 ... Q14126 31797817
    32826 6sit:D (4.5) BS04 CA ? GO:0005509 ... Q14126 31797817
    32827 6sit:D (4.5) BS05 CA ? GO:0005509 ... Q14126 31797817
    32828 6sit:D (4.5) BS06 CA ? GO:0005509 ... Q14126 31797817
    32829 6sjw:A (-1.00) BS01 CA ? GO:0005509 ... P55127 32184239
    32830 6sjw:A (-1.00) BS02 CA ? GO:0005509 ... P55127 32184239
    32831 6sjw:A (-1.00) BS03 CA ? GO:0005509 ... P55127 32184239
    32832 6sjw:A (-1.00) BS04 CA ? GO:0005509 ... P55127 32184239
    32833 6sjx:A (-1.00) BS01 CA ? GO:0005509 ... P55127 32184239
    32834 6sjx:A (-1.00) BS02 CA ? GO:0005509 ... P55127 32184239
    32835 6sjx:A (-1.00) BS03 CA ? GO:0005509 ... P55127 32184239
    32836 6sjx:A (-1.00) BS04 CA ? GO:0005509 ... P55127 32184239
    32837 6sjx:A (-1.00) BS05 CA ? GO:0005509 ... P55127 32184239
    32838 6ska:D (3.86) BS01 CA ? GO:0004930 ... Q80TR1 31928845
    32839 6skh:A (1.58) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 38224368
    32840 6sl2:A (3.1) BS01 CA ? GO:0003779 ... C4LWU6 32848067
    32841 6sl3:A (3.1) BS01 CA ? GO:0003779 ... C4LWU6 32848067
    32842 6sl4:A (1.8) BS01 CA ? GO:0005975 ... A3DC31 N/A
    32843 6sl4:A (1.8) BS02 CA ? GO:0005975 ... A3DC31 N/A
    32844 6sl4:B (1.8) BS01 CA ? GO:0005975 ... A3DC31 N/A
    32845 6sl4:B (1.8) BS02 CA ? GO:0005975 ... A3DC31 N/A
    32846 6sl4:C (1.8) BS01 CA ? GO:0005975 ... A3DC31 N/A
    32847 6sl4:C (1.8) BS02 CA ? GO:0005975 ... A3DC31 N/A
    32848 6sl5:B (2.84) BS50 CA 1.97.1.12 GO:0000287 ... D0FXZ0 32569661
    32849 6sm1:A (1.55) BS01 CA ? GO:0002250 ... P01704 32151314
    32850 6sms:A (1.47) BS01 CA N/A GO:0005576 ... N/A N/A
    32851 6sms:A (1.47) BS02 CA N/A GO:0005576 ... N/A N/A
    32852 6sms:A (1.47) BS03 CA N/A GO:0005576 ... N/A N/A
    32853 6sn6:A (1.93) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    32854 6sn6:A (1.93) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    32855 6sn6:A (1.93) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    32856 6sov:A (1.31) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    32857 6sov:A (1.31) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    32858 6sp9:A (1.22) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    32859 6sp9:A (1.22) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    32860 6spl:A (1.38) BS02 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    32861 6spl:A (1.38) BS03 CA 2.7.11.24 GO:0000077 ... P47811 32543856
    32862 6sqi:A (1.6) BS01 CA 2.1.1.319 GO:0000122 ... Q6NZB1 N/A
    32863 6ssa:K (2.11) BS01 CA ? GO:0000139 ... P61769 32645549
    32864 6ssi:A (2.59) BS02 CA ? GO:0004888 ... P0C7B7 31990273
    32865 6ssi:B (2.59) BS02 CA ? GO:0004888 ... P0C7B7 31990273
    32866 6ssi:C (2.59) BS02 CA ? GO:0004888 ... P0C7B7 31990273
    32867 6ssi:D (2.59) BS02 CA ? GO:0004888 ... P0C7B7 31990273
    32868 6ssi:E (2.59) BS02 CA ? GO:0004888 ... P0C7B7 31990273
    32869 6ssp:F (3.25) BS01 CA ? GO:0004888 ... P0C7B7 31990273
    32870 6ssp:H (3.25) BS01 CA ? GO:0004888 ... P0C7B7 31990273
    32871 6std:A (1.8) BS01 CA 4.2.1.94 GO:0005575 ... P56221 10382670
    32872 6std:B (1.8) BS01 CA 4.2.1.94 GO:0005575 ... P56221 10382670
    32873 6std:C (1.8) BS01 CA 4.2.1.94 GO:0005575 ... P56221 10382670
    32874 6sun:A (1.35) BS01 CA N/A N/A N/A 32637600
    32875 6sun:A (1.35) BS02 CA N/A N/A N/A 32637600
    32876 6sus:A (1.76) BS01 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32877 6sus:A (1.76) BS02 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32878 6sus:A (1.76) BS03 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32879 6sus:A (1.76) BS04 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32880 6sus:A (1.76) BS05 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32881 6sus:A (1.76) BS06 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32882 6sus:A (1.76) BS07 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32883 6sus:A (1.76) BS08 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32884 6sus:A (1.76) BS09 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32885 6sus:A (1.76) BS10 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32886 6sus:A (1.76) BS11 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32887 6sus:A (1.76) BS12 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32888 6sus:A (1.76) BS13 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32889 6sus:A (1.76) BS14 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32890 6sus:A (1.76) BS15 CA 4.6.1.1 GO:0005509 ... P0DKX7 32860773
    32891 6suw:B (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32892 6suw:E (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32893 6suw:F (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32894 6suw:I (2.66) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32895 6suw:I (2.66) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32896 6suw:K (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32897 6suw:L (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32898 6suw:M (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32899 6suw:P (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32900 6suw:Q (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32901 6suw:Q (2.66) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32902 6suw:R (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32903 6suw:U (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32904 6suw:X (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32905 6suw:Z (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32906 6suw:Z (2.66) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32907 6sux:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32908 6sv0:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32909 6sv1:H (2.19) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32910 6sv1:Q (2.19) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32911 6sv1:T (2.19) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32912 6sv1:W (2.19) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32913 6sv1:b (2.19) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    32914 6sv6:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32915 6sv8:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32916 6sv9:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32917 6svb:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32918 6svd:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32919 6svg:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32920 6svi:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32921 6svj:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32922 6svn:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32923 6svr:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32924 6svu:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32925 6svv:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32926 6svw:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32927 6svx:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32928 6svz:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32929 6sw0:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    32930 6swv:AAA (1.432) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32381789
    32931 6sy3:A (0.95) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32011145
    32932 6syq:A (3.0) BS05 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32933 6syq:B (3.0) BS03 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32934 6sz5:A (2.23) BS03 CA ? GO:0000086 ... P0DP24 31785178
    32935 6sz5:A (2.23) BS04 CA ? GO:0000086 ... P0DP24 31785178
    32936 6sz5:A (2.23) BS05 CA ? GO:0000086 ... P0DP24 31785178
    32937 6sz5:A (2.23) BS06 CA ? GO:0000086 ... P0DP24 31785178
    32938 6szg:B (1.84) BS01 CA 2.5.1.31 GO:0000287 ... V5VCK8 31929185
    32939 6szh:B (1.65) BS01 CA 2.5.1.31 GO:0000287 ... V5VCK8 31929185
    32940 6szi:A (3.0) BS05 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32941 6szi:B (3.0) BS03 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32942 6t0b:a (2.8) BS04 CA 7.1.1.9 GO:0004129 ... P00401 32291341
    32943 6t0b:n (2.8) BS04 CA 7.1.1.9 GO:0004129 ... P00401 32291341
    32944 6t0m:A (1.51) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32011145
    32945 6t0p:A (1.19) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32011145
    32946 6t0q:A (2.05) BS01 CA ? GO:0046872 ... E7E2M2 31985778
    32947 6t0q:A (2.05) BS02 CA ? GO:0046872 ... E7E2M2 31985778
    32948 6t16:A (3.1) BS01 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32949 6t16:B (3.1) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32950 6t18:A (3.15) BS03 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32951 6t18:B (3.15) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32952 6t1d:A (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    32953 6t1d:A (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    32954 6t1d:B (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    32955 6t1d:B (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    32956 6t1d:C (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    32957 6t1d:C (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    32958 6t1d:D (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    32959 6t1d:D (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    32960 6t1d:E (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    32961 6t1d:E (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    32962 6t1d:F (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    32963 6t1d:F (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    32964 6t1p:A (3.5) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32965 6t1p:B (3.5) BS02 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    32966 6t2n:AAA (2.7) BS01 CA ? GO:0004553 ... A0A2N8IRP0 32782292
    32967 6t2n:BBB (2.7) BS01 CA ? GO:0004553 ... A0A2N8IRP0 32782292
    32968 6t2o:AAA (2.05) BS01 CA N/A GO:0004553 ... N/A 32782292
    32969 6t2o:BBB (2.05) BS01 CA N/A GO:0004553 ... N/A 32782292
    32970 6t2p:AAA (2.1) BS01 CA N/A GO:0004553 ... N/A 32782292
    32971 6t2p:BBB (2.1) BS01 CA N/A GO:0004553 ... N/A 32782292
    32972 6t2q:AAA (2.0) BS02 CA N/A GO:0004553 ... N/A 32782292
    32973 6t2q:BBB (2.0) BS02 CA N/A GO:0004553 ... N/A 32782292
    32974 6t58:A (3.1) BS01 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32975 6t58:A (3.1) BS02 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32976 6t58:A (3.1) BS03 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32977 6t58:A (3.1) BS04 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32978 6t58:A (3.1) BS05 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32979 6t58:A (3.1) BS06 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32980 6t58:A (3.1) BS07 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32981 6t58:A (3.1) BS08 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32982 6t58:A (3.1) BS09 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32983 6t58:A (3.1) BS10 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32984 6t58:B (3.1) BS01 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32985 6t58:B (3.1) BS02 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32986 6t58:B (3.1) BS03 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32987 6t58:B (3.1) BS04 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32988 6t58:B (3.1) BS05 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    32989 6t5w:A (1.13) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32011145
    32990 6t6v:A (4.5) BS03 CA N/A GO:0004129 ... N/A 32431824
    32991 6t72:A (3.7) BS04 CA ? N/A P35828 31883796
    32992 6t72:A (3.7) BS05 CA ? N/A P35828 31883796
    32993 6t72:A (3.7) BS06 CA ? N/A P35828 31883796
    32994 6t8e:A (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    32995 6t8e:A (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    32996 6t8e:B (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    32997 6t8e:B (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    32998 6t8e:C (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    32999 6t8e:C (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    33000 6t8e:D (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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