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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31801 6o77:C (3.2) BS01 CA N/A GO:0005216 ... N/A 31488702
    31802 6o77:D (3.2) BS02 CA N/A GO:0005216 ... N/A 31488702
    31803 6o7c:A (1.85) BS01 CA ? GO:0006811 ... Q5H8A6 31420535
    31804 6o7c:A (1.85) BS02 CA ? GO:0006811 ... Q5H8A6 31420535
    31805 6o7c:A (1.85) BS03 CA ? GO:0006811 ... Q5H8A6 31420535
    31806 6o83:A (3.153) BS01 CA 6.2.1.45 GO:0000287 ... O94609 31235585
    31807 6o83:C (3.153) BS01 CA 6.2.1.45 GO:0000287 ... O94609 31235585
    31808 6o9f:A (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31809 6o9f:B (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31810 6o9f:B (2.48) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31811 6o9f:C (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31812 6o9f:D (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31813 6o9f:E (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31814 6o9f:F (2.48) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31815 6o9n:A (2.598) BS02 CA 1.1.3.7 GO:0016614 ... G2PZJ2 32653619
    31816 6o9n:B (2.598) BS02 CA 1.1.3.7 GO:0016614 ... G2PZJ2 32653619
    31817 6oad:A (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31818 6oad:B (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31819 6oad:C (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31820 6oad:D (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31821 6oad:E (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31822 6oad:F (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31823 6oad:G (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31824 6oad:H (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31825 6oad:I (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31826 6oad:I (2.05) BS04 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31827 6oad:J (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31828 6oad:K (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31829 6oad:L (2.05) BS03 CA 3.4.11.23 GO:0004177 ... P37095 32306515
    31830 6oae:A (1.9) BS01 CA ? GO:0005509 ... Q9HBB8 N/A
    31831 6oae:A (1.9) BS02 CA ? GO:0005509 ... Q9HBB8 N/A
    31832 6oae:A (1.9) BS03 CA ? GO:0005509 ... Q9HBB8 N/A
    31833 6oau:A (2.48) BS01 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31834 6oau:B (2.48) BS01 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31835 6oaz:A (3.04) BS01 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31836 6oaz:B (3.04) BS01 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31837 6oaz:C (3.04) BS01 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31838 6oaz:D (3.04) BS01 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31839 6ob0:A (2.81) BS03 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31840 6ob0:B (2.81) BS05 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31841 6ob0:C (2.81) BS03 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31842 6ob0:D (2.81) BS05 CA 3.1.1.32
    3.1.1.34
    GO:0004465 ... P06858 31072929
    31843 6obx:A (1.3) BS01 CA 3.2.1.1 GO:0003824 ... P04746 32206255
    31844 6ocn:A (1.147) BS02 CA 3.2.1.1 GO:0003824 ... P04746 32206255
    31845 6ocx:A (1.9) BS02 CA ? GO:0000287 ... Q99828 32383857
    31846 6ocx:A (1.9) BS03 CA ? GO:0000287 ... Q99828 32383857
    31847 6ocx:B (1.9) BS02 CA ? GO:0000287 ... Q99828 32383857
    31848 6ocx:B (1.9) BS03 CA ? GO:0000287 ... Q99828 32383857
    31849 6ocx:C (1.9) BS02 CA ? GO:0000287 ... Q99828 32383857
    31850 6ocx:C (1.9) BS03 CA ? GO:0000287 ... Q99828 32383857
    31851 6ocx:D (1.9) BS02 CA ? GO:0000287 ... Q99828 32383857
    31852 6ocx:D (1.9) BS03 CA ? GO:0000287 ... Q99828 32383857
    31853 6od0:A (2.15) BS02 CA ? GO:0000287 ... Q99828 32383857
    31854 6od0:A (2.15) BS03 CA ? GO:0000287 ... Q99828 32383857
    31855 6od0:B (2.15) BS02 CA ? GO:0000287 ... Q99828 32383857
    31856 6od0:B (2.15) BS03 CA ? GO:0000287 ... Q99828 32383857
    31857 6odd:A (2.0) BS01 CA ? GO:0006633 ... O14561 31664822
    31858 6oec:B (2.514) BS01 CA ? GO:0000160 ... P36094
    Q3ADQ4
    30969903
    31859 6oec:C (2.514) BS01 CA ? GO:0000160 ... P36094
    Q3ADQ4
    30969903
    31860 6oec:E (2.514) BS01 CA ? GO:0000160 ... P36094
    Q3ADQ4
    30969903
    31861 6oec:F (2.514) BS01 CA ? GO:0000160 ... P36094
    Q3ADQ4
    30969903
    31862 6oec:G (2.514) BS01 CA ? GO:0000160 ... P36094
    Q3ADQ4
    30969903
    31863 6oec:I (2.514) BS01 CA ? GO:0000160 ... P36094
    Q3ADQ4
    30969903
    31864 6oec:L (2.514) BS01 CA ? GO:0000160 ... P36094
    Q3ADQ4
    30969903
    31865 6oeo:A (3.69) BS05 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31866 6oeo:A (3.69) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31867 6oeo:C (3.69) BS05 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31868 6oeo:C (3.69) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31869 6oep:A (3.7) BS05 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31870 6oep:A (3.7) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31871 6oeq:C (4.3) BS05 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31872 6oeq:C (4.3) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31873 6oer:A (3.29) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31874 6oer:A (3.29) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31875 6oer:C (3.29) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31876 6oer:C (3.29) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015552
    31877 6oes:A (3.06) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015553
    31878 6oes:C (3.06) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015553
    31879 6oet:A (3.4) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015553
    31880 6oet:C (3.4) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0002250 ... P15919 32015553
    31881 6ohh:A (2.1) BS01 CA N/A N/A N/A N/A
    31882 6ohh:B (2.1) BS01 CA N/A N/A N/A N/A
    31883 6ojh:A (2.05) BS02 CA 6.3.4.14 GO:0003824 ... P43873 N/A
    31884 6ok8:A (1.8) BS01 CA 3.1.31.1 GO:0003676 ... P00644 31692475
    31885 6oly:A (3.112) BS01 CA ? GO:0005886 ... O27564 31772184
    31886 6oly:A (3.112) BS02 CA ? GO:0005886 ... O27564 31772184
    31887 6oly:B (3.112) BS01 CA ? GO:0005886 ... O27564 31772184
    31888 6oly:B (3.112) BS02 CA ? GO:0005886 ... O27564 31772184
    31889 6oly:C (3.112) BS01 CA ? GO:0005886 ... O27564 31772184
    31890 6oly:C (3.112) BS02 CA ? GO:0005886 ... O27564 31772184
    31891 6oly:D (3.112) BS01 CA ? GO:0005886 ... O27564 31772184
    31892 6oly:D (3.112) BS02 CA ? GO:0005886 ... O27564 31772184
    31893 6om1:A (2.66) BS01 CA ? GO:0007155 ... P06756 31792290
    31894 6om1:A (2.66) BS02 CA ? GO:0007155 ... P06756 31792290
    31895 6om1:A (2.66) BS03 CA ? GO:0007155 ... P06756 31792290
    31896 6om1:A (2.66) BS04 CA ? GO:0007155 ... P06756 31792290
    31897 6om1:B (2.66) BS02 CA ? N/A P26012 31792290
    31898 6om1:C (2.66) BS01 CA ? GO:0007155 ... P06756 31792290
    31899 6om1:C (2.66) BS02 CA ? GO:0007155 ... P06756 31792290
    31900 6om1:C (2.66) BS03 CA ? GO:0007155 ... P06756 31792290
    31901 6om1:C (2.66) BS04 CA ? GO:0007155 ... P06756 31792290
    31902 6om1:D (2.66) BS02 CA ? N/A P26012 31792290
    31903 6om1:E (2.66) BS01 CA ? GO:0007155 ... P06756 31792290
    31904 6om1:E (2.66) BS02 CA ? GO:0007155 ... P06756 31792290
    31905 6om1:E (2.66) BS03 CA ? GO:0007155 ... P06756 31792290
    31906 6om1:E (2.66) BS04 CA ? GO:0007155 ... P06756 31792290
    31907 6om1:F (2.66) BS02 CA ? N/A P26012 31792290
    31908 6om1:G (2.66) BS01 CA ? GO:0007155 ... P06756 31792290
    31909 6om1:G (2.66) BS02 CA ? GO:0007155 ... P06756 31792290
    31910 6om1:G (2.66) BS03 CA ? GO:0007155 ... P06756 31792290
    31911 6om1:G (2.66) BS04 CA ? GO:0007155 ... P06756 31792290
    31912 6om1:H (2.66) BS02 CA ? N/A P26012 31792290
    31913 6om2:A (2.77) BS02 CA ? GO:0007155 ... P06756 31792290
    31914 6om2:A (2.77) BS03 CA ? GO:0007155 ... P06756 31792290
    31915 6om2:A (2.77) BS04 CA ? GO:0007155 ... P06756 31792290
    31916 6om2:A (2.77) BS05 CA ? GO:0007155 ... P06756 31792290
    31917 6om2:B (2.77) BS03 CA ? N/A P26012 31792290
    31918 6om2:C (2.77) BS03 CA ? GO:0007155 ... P06756 31792290
    31919 6om2:C (2.77) BS04 CA ? GO:0007155 ... P06756 31792290
    31920 6om2:C (2.77) BS05 CA ? GO:0007155 ... P06756 31792290
    31921 6om2:C (2.77) BS06 CA ? GO:0007155 ... P06756 31792290
    31922 6om2:D (2.77) BS02 CA ? N/A P26012 31792290
    31923 6ont:A (1.803) BS01 CA ? GO:0000160 ... A0Q7V5 32232010
    31924 6op1:B (1.7) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31925 6op1:B (1.7) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31926 6op1:D (1.7) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31927 6op1:D (1.7) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31928 6op2:B (1.9) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31929 6op2:B (1.9) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31930 6op2:D (1.9) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31931 6op2:D (1.9) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31932 6op3:A (1.6) BS04 CA 1.18.6.1 GO:0005524 ... P07328 31356071
    31933 6op3:B (1.6) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31934 6op3:B (1.6) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31935 6op3:D (1.6) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31936 6op3:D (1.6) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31937 6op3:D (1.6) BS04 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31938 6op4:B (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31939 6op4:B (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31940 6op4:D (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31941 6op4:D (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 31356071
    31942 6opm:A (3.1) BS03 CA 3.1.-.- GO:0003676 ... A0A0F8IEL4 31913120
    31943 6opm:C (3.1) BS03 CA 3.1.-.- GO:0003676 ... A0A0F8IEL4 31913120
    31944 6oqq:B (2.102) BS01 CA ? GO:0000131 ... P06787 31123136
    31945 6oqq:B (2.102) BS02 CA ? GO:0000131 ... P06787 31123136
    31946 6oqq:D (2.102) BS01 CA ? GO:0000131 ... P06787 31123136
    31947 6oqq:D (2.102) BS02 CA ? GO:0000131 ... P06787 31123136
    31948 6org:A (1.72) BS01 CA ? GO:0004560 ... A0A0H2US78 31266803
    31949 6org:B (1.72) BS01 CA ? GO:0004560 ... A0A0H2US78 31266803
    31950 6ori:A (1.4) BS01 CA ? N/A Q9Z4N7 N/A
    31951 6os4:A (2.05) BS01 CA ? GO:0000086 ... P0DP23 32234958
    31952 6os4:A (2.05) BS02 CA ? GO:0000086 ... P0DP23 32234958
    31953 6os4:A (2.05) BS03 CA ? GO:0000086 ... P0DP23 32234958
    31954 6os4:A (2.05) BS04 CA ? GO:0000086 ... P0DP23 32234958
    31955 6osz:B (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31956 6osz:C (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31957 6osz:D (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31958 6osz:E (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31959 6osz:F (1.43) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    31960 6ou1:A (1.878) BS01 CA ? N/A Q99972 31270212
    31961 6ou1:B (1.878) BS01 CA ? N/A Q99972 31270212
    31962 6ovz:A (2.017) BS04 CA 3.5.2.6 N/A E5KIY2 31145588
    31963 6ovz:B (2.017) BS05 CA 3.5.2.6 N/A E5KIY2 31145588
    31964 6oy3:A (4.0) BS01 CA ? GO:0005254 ... C7Z7K1 31672969
    31965 6oy3:A (4.0) BS02 CA ? GO:0005254 ... C7Z7K1 31672969
    31966 6oy3:B (4.0) BS01 CA ? GO:0005254 ... C7Z7K1 31672969
    31967 6oy3:B (4.0) BS02 CA ? GO:0005254 ... C7Z7K1 31672969
    31968 6oz7:A (1.36) BS01 CA 1.-.-.- GO:0016491 ... P33368 N/A
    31969 6ozf:A (1.8) BS02 CA 3.1.21.7 GO:0000287 ... Q9X2H9 31444105
    31970 6ozf:B (1.8) BS02 CA 3.1.21.7 GO:0000287 ... Q9X2H9 31444105
    31971 6ozh:A (3.026) BS03 CA N/A GO:0004519 ... N/A 31444105
    31972 6ozh:A (3.026) BS04 CA N/A GO:0004519 ... N/A 31444105
    31973 6ozh:B (3.026) BS03 CA N/A GO:0004519 ... N/A 31444105
    31974 6ozh:B (3.026) BS04 CA N/A GO:0004519 ... N/A 31444105
    31975 6ozh:C (3.026) BS03 CA N/A GO:0004519 ... N/A 31444105
    31976 6ozh:C (3.026) BS04 CA N/A GO:0004519 ... N/A 31444105
    31977 6ozh:D (3.026) BS03 CA N/A GO:0004519 ... N/A 31444105
    31978 6ozh:D (3.026) BS04 CA N/A GO:0004519 ... N/A 31444105
    31979 6ozk:A (2.104) BS03 CA 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    31980 6ozk:A (2.104) BS04 CA 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    31981 6ozk:B (2.104) BS03 CA 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    31982 6ozk:B (2.104) BS04 CA 3.1.26.- GO:0004519 ... Q8C9A2 31444105
    31983 6p06:A (2.3) BS03 CA 2.7.7.- GO:0016740 ... P05058 N/A
    31984 6p06:A (2.3) BS04 CA 2.7.7.- GO:0016740 ... P05058 N/A
    31985 6p06:B (2.3) BS04 CA 2.7.7.- GO:0016740 ... P05058 N/A
    31986 6p06:B (2.3) BS06 CA 2.7.7.- GO:0016740 ... P05058 N/A
    31987 6p1h:A (3.2) BS05 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... P15436 31582849
    31988 6p1h:A (3.2) BS06 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... P15436 31582849
    31989 6p1h:A (3.2) BS07 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... P15436 31582849
    31990 6p3j:B (2.02) BS01 CA 5.3.3.- GO:0009056 ... Q0KJL4 31339729
    31991 6p3j:B (2.02) BS02 CA 5.3.3.- GO:0009056 ... Q0KJL4 31339729
    31992 6p46:A (3.5) BS01 CA ? GO:0002407 ... Q6P9J9 31291589
    31993 6p46:B (3.5) BS01 CA ? GO:0002407 ... Q6P9J9 31291589
    31994 6p48:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 31291589
    31995 6p48:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 31291589
    31996 6p49:A (3.3) BS01 CA ? GO:0002407 ... Q6P9J9 31291589
    31997 6p49:B (3.3) BS01 CA ? GO:0002407 ... Q6P9J9 31291589
    31998 6p73:A (1.65) BS06 CA 1.7.2.2 GO:0005506 ... Q8EAC7 31381304
    31999 6p73:B (1.65) BS07 CA 1.7.2.2 GO:0005506 ... Q8EAC7 31381304
    32000 6p81:A (1.75) BS02 CA ? GO:0003677 ... Q12306 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218