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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 1m1u:A (2.3) BS01 CA ? N/A P11215 11034990
    3002 1m1y:B (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3003 1m1y:B (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3004 1m1y:D (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3005 1m1y:D (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3006 1m1y:J (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3007 1m1y:J (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3008 1m1y:L (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3009 1m1y:L (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3010 1m34:B (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3011 1m34:B (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3012 1m34:D (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3013 1m34:D (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3014 1m34:J (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3015 1m34:J (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3016 1m34:L (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3017 1m34:L (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    3018 1m56:A (2.3) BS03 CA 7.1.1.9 GO:0004129 ... P33517 12144789
    3019 1m56:G (2.3) BS03 CA 7.1.1.9 GO:0004129 ... P33517 12144789
    3020 1m57:A (3.0) BS03 CA 7.1.1.9 GO:0004129 ... P33517 12144789
    3021 1m57:G (3.0) BS03 CA 7.1.1.9 GO:0004129 ... P33517 12144789
    3022 1m5o:C (2.2) BS02 CA ? GO:0003676 ... P09012 12376595
    3023 1m5o:C (2.2) BS03 CA ? GO:0003676 ... P09012 12376595
    3024 1m5o:F (2.2) BS02 CA ? GO:0003676 ... P09012 12376595
    3025 1m5p:F (2.6) BS02 CA ? GO:0003676 ... P09012 12376595
    3026 1m5v:C (2.4) BS02 CA ? GO:0003676 ... P09012 12376595
    3027 1m63:B (2.8) BS02 CA ? GO:0001569 ... P63098 12218175
    3028 1m63:B (2.8) BS03 CA ? GO:0001569 ... P63098 12218175
    3029 1m63:B (2.8) BS04 CA ? GO:0001569 ... P63098 12218175
    3030 1m63:B (2.8) BS05 CA ? GO:0001569 ... P63098 12218175
    3031 1m63:F (2.8) BS02 CA ? GO:0001569 ... P63098 12218175
    3032 1m63:F (2.8) BS03 CA ? GO:0001569 ... P63098 12218175
    3033 1m63:F (2.8) BS04 CA ? GO:0001569 ... P63098 12218175
    3034 1m63:F (2.8) BS05 CA ? GO:0001569 ... P63098 12218175
    3035 1m6s:A (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 12269813
    3036 1m6s:B (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 12269813
    3037 1m6s:B (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 12269813
    3038 1m6s:C (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 12269813
    3039 1m6s:D (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 12269813
    3040 1m6s:D (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 12269813
    3041 1m8t:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    3042 1m8t:B (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    3043 1m8t:C (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    3044 1m8t:D (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    3045 1m8t:E (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    3046 1m8t:F (2.1) BS01 CA 3.1.1.4 GO:0004623 ... Q9DF33 12925787
    3047 1m9i:A (2.65) BS01 CA ? GO:0001786 ... P08133 12534274
    3048 1m9i:A (2.65) BS02 CA ? GO:0001786 ... P08133 12534274
    3049 1m9i:A (2.65) BS03 CA ? GO:0001786 ... P08133 12534274
    3050 1m9i:A (2.65) BS04 CA ? GO:0001786 ... P08133 12534274
    3051 1m9i:A (2.65) BS05 CA ? GO:0001786 ... P08133 12534274
    3052 1mac:A (2.3) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7852389
    3053 1mac:B (2.3) BS01 CA 3.2.1.73 GO:0004553 ... P23904 7852389
    3054 1max:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 8605148
    3055 1may:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 8605148
    3056 1mbq:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... Q8AV11 12445776
    3057 1mct:A (1.6) BS02 CA 3.4.21.4 GO:0004252 ... P00761 8445634
    3058 1mcv:A (1.8) BS02 CA 3.4.21.36 GO:0004252 ... P00772 12554935
    3059 1mcx:A (2.03) BS01 CA ? GO:0001786 ... P19619 12595246
    3060 1mcx:A (2.03) BS02 CA ? GO:0001786 ... P19619 12595246
    3061 1mcx:A (2.03) BS03 CA ? GO:0001786 ... P19619 12595246
    3062 1mcx:A (2.03) BS04 CA ? GO:0001786 ... P19619 12595246
    3063 1mcx:A (2.03) BS05 CA ? GO:0001786 ... P19619 12595246
    3064 1mcx:A (2.03) BS06 CA ? GO:0001786 ... P19619 12595246
    3065 1mcx:A (2.03) BS07 CA ? GO:0001786 ... P19619 12595246
    3066 1mcx:A (2.03) BS08 CA ? GO:0001786 ... P19619 12595246
    3067 1mdu:A (2.2) BS01 CA ? GO:0051015 ... P06396 12356759
    3068 1mdu:A (2.2) BS02 CA ? GO:0051015 ... P06396 12356759
    3069 1mdu:D (2.2) BS01 CA ? GO:0051015 ... P06396 12356759
    3070 1mdu:D (2.2) BS02 CA ? GO:0051015 ... P06396 12356759
    3071 1mdw:A (1.95) BS01 CA 3.4.22.53 GO:0004198 ... Q07009 12665854
    3072 1mdw:A (1.95) BS02 CA 3.4.22.53 GO:0004198 ... Q07009 12665854
    3073 1mdw:B (1.95) BS01 CA 3.4.22.53 GO:0004198 ... Q07009 12665854
    3074 1mdw:B (1.95) BS02 CA 3.4.22.53 GO:0004198 ... Q07009 12665854
    3075 1mee:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P07518 1793542
    3076 1mee:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P07518 1793542
    3077 1mf4:A (1.9) BS02 CA 3.1.1.4 GO:0004623 ... P60045 14529280
    3078 1mf8:B (3.1) BS01 CA 3.1.3.16 GO:0001569 ... P63098 12357034
    3079 1mf8:B (3.1) BS02 CA 3.1.3.16 GO:0001569 ... P63098 12357034
    3080 1mf8:B (3.1) BS03 CA 3.1.3.16 GO:0001569 ... P63098 12357034
    3081 1mf8:B (3.1) BS04 CA 3.1.3.16 GO:0001569 ... P63098 12357034
    3082 1mfu:A (2.0) BS12 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    3083 1mfv:A (2.0) BS08 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    3084 1mhl:C (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    3085 1mhl:D (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    3086 1mho:A (2.0) BS01 CA ? GO:0005509 ... P02638 9519413
    3087 1mho:A (2.0) BS02 CA ? GO:0005509 ... P02638 9519413
    3088 1mio:B (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    3089 1mio:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    3090 1mio:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    3091 1mio:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    3092 1mj2:B (2.4) BS05 CA ? GO:0003677 ... P0A8U6 10986458
    3093 1mjo:B (2.1) BS04 CA ? GO:0003677 ... P0A8U6 10986458
    3094 1mks:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9115986
    3095 1mkt:A (1.72) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9761901
    3096 1mku:A (1.8) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9115986
    3097 1mkv:A (1.89) BS01 CA 3.1.1.4 GO:0002227 ... P00593 9761900
    3098 1mmb:A (2.1) BS01 CA 3.4.24.34 GO:0004222 ... P22894 7577999
    3099 1mmb:A (2.1) BS02 CA 3.4.24.34 GO:0004222 ... P22894 7577999
    3100 1mmj:N (2.2) BS01 CA 3.4.21.36 GO:0004252 ... P00772 12467609
    3101 1mmp:A (2.3) BS03 CA 3.4.24.23 GO:0004222 ... P09237 7756291
    3102 1mmp:A (2.3) BS04 CA 3.4.24.23 GO:0004222 ... P09237 7756291
    3103 1mmp:B (2.3) BS03 CA 3.4.24.23 GO:0004222 ... P09237 7756291
    3104 1mmp:B (2.3) BS04 CA 3.4.24.23 GO:0004222 ... P09237 7756291
    3105 1mmq:A (1.9) BS03 CA 3.4.24.23 GO:0004222 ... P09237 7756291
    3106 1mmq:A (1.9) BS04 CA 3.4.24.23 GO:0004222 ... P09237 7756291
    3107 1mmr:A (2.4) BS03 CA 3.4.24.23 GO:0004222 ... P09237 7756291
    3108 1mmr:A (2.4) BS04 CA 3.4.24.23 GO:0004222 ... P09237 7756291
    3109 1mn1:A (2.0) BS01 CA 1.11.1.13 GO:0000302 ... Q02567 9211904
    3110 1mn1:A (2.0) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 9211904
    3111 1mn2:A (2.0) BS01 CA 1.11.1.13 GO:0000302 ... Q02567 9211904
    3112 1mn2:A (2.0) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 9211904
    3113 1mnc:A (2.1) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7656015
    3114 1mnp:A (2.0) BS01 CA 1.11.1.13 GO:0000302 ... Q02567 8182752
    3115 1mnp:A (2.0) BS02 CA 1.11.1.13 GO:0000302 ... Q02567 8182752
    3116 1mnz:A (0.99) BS02 CA 5.3.1.5 GO:0000287 ... P24300 N/A
    3117 1mpt:A (2.4) BS01 CA 3.4.21.- GO:0004252 ... Q99405 15299321
    3118 1mpt:A (2.4) BS02 CA 3.4.21.- GO:0004252 ... Q99405 15299321
    3119 1mpx:A (1.9) BS01 CA 3.1.1.43 GO:0008239 ... Q6YBS3 12684501
    3120 1mpx:B (1.9) BS01 CA 3.1.1.43 GO:0008239 ... Q6YBS3 12684501
    3121 1mpx:C (1.9) BS01 CA 3.1.1.43 GO:0008239 ... Q6YBS3 12684501
    3122 1mpx:D (1.9) BS01 CA 3.1.1.43 GO:0008239 ... Q6YBS3 12684501
    3123 1mq5:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12501180
    3124 1mq6:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12501180
    3125 1mr8:A (1.9) BS01 CA ? GO:0002523 ... P05109 10771424
    3126 1mr8:A (1.9) BS02 CA ? GO:0002523 ... P05109 10771424
    3127 1mr8:B (1.9) BS01 CA ? GO:0002523 ... P05109 10771424
    3128 1mr8:B (1.9) BS02 CA ? GO:0002523 ... P05109 10771424
    3129 1mts:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7498454
    3130 1mtu:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7498454
    3131 1mtv:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7498454
    3132 1mtw:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7498454
    3133 1mu5:A (2.0) BS01 CA 5.6.2.2 GO:0003676 ... O05207 12505993
    3134 1muq:A (2.3) BS01 CA ? GO:0005576 ... P21963 15049685
    3135 1muq:B (2.3) BS02 CA ? GO:0005576 ... P21963 15049685
    3136 1muq:C (2.3) BS01 CA ? GO:0005576 ... P21963 15049685
    3137 1muq:D (2.3) BS01 CA ? GO:0005576 ... P21963 15049685
    3138 1muq:E (2.3) BS01 CA ? GO:0005576 ... P21963 15049685
    3139 1mux:A (-1.00) BS01 CA ? GO:0005102 ... P0DP33 9514729
    3140 1mux:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 9514729
    3141 1mux:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 9514729
    3142 1mux:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 9514729
    3143 1mve:A (1.7) BS01 CA 3.2.1.73 GO:0004553 ... P17989 12842475
    3144 1mvq:A (1.77) BS02 CA ? GO:0030246 ... P83721 12966038
    3145 1mwe:A (1.7) BS03 CA 3.2.1.18 GO:0004308 ... P03472 9342319
    3146 1mwn:A (-1.00) BS02 CA ? GO:0001726 ... P04631 12470955
    3147 1mwn:A (-1.00) BS03 CA ? GO:0001726 ... P04631 12470955
    3148 1mwn:B (-1.00) BS02 CA ? GO:0001726 ... P04631 12470955
    3149 1mwn:B (-1.00) BS03 CA ? GO:0001726 ... P04631 12470955
    3150 1mwo:A (2.2) BS06 CA 3.2.1.1 GO:0004553 ... Q7LYT7 12482867
    3151 1mxd:A (2.0) BS15 CA 3.2.1.1 GO:0004553 ... Q7LYT7 12482867
    3152 1mxe:A (1.7) BS02 CA ? GO:0005509 ... P62152 12475216
    3153 1mxe:A (1.7) BS03 CA ? GO:0005509 ... P62152 12475216
    3154 1mxe:A (1.7) BS04 CA ? GO:0005509 ... P62152 12475216
    3155 1mxe:A (1.7) BS05 CA ? GO:0005509 ... P62152 12475216
    3156 1mxe:B (1.7) BS02 CA ? GO:0005509 ... P62152 12475216
    3157 1mxe:B (1.7) BS03 CA ? GO:0005509 ... P62152 12475216
    3158 1mxe:B (1.7) BS04 CA ? GO:0005509 ... P62152 12475216
    3159 1mxe:B (1.7) BS05 CA ? GO:0005509 ... P62152 12475216
    3160 1mxg:A (1.6) BS07 CA 3.2.1.1 GO:0004553 ... Q7LYT7 12482867
    3161 1mxl:C (-1.00) BS02 CA ? GO:0005509 ... P63316 10387074
    3162 1myp:C (3.0) BS01 CA 1.11.2.2 GO:0004601 ... P05164 1320128
    3163 1myp:D (3.0) BS01 CA 1.11.2.2 GO:0004601 ... P05164 1320128
    3164 1n28:A (1.5) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    3165 1n28:A (1.5) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    3166 1n28:B (1.5) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    3167 1n28:B (1.5) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    3168 1n29:A (2.6) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    3169 1n29:A (2.6) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12501175
    3170 1n2c:B (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P07329 9163420
    3171 1n2c:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P07329 9163420
    3172 1n2c:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P07329 9163420
    3173 1n2c:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P07329 9163420
    3174 1n2k:A (2.75) BS01 CA 3.1.6.8 GO:0004065 ... P15289 12888274
    3175 1n2l:A (3.2) BS01 CA 3.1.6.8 GO:0004065 ... P15289 12888274
    3176 1n3o:A (2.0) BS03 CA ? GO:0030246 ... Q8GSD2 12595543
    3177 1n3o:B (2.0) BS03 CA ? GO:0030246 ... Q8GSD2 12595543
    3178 1n3p:A (2.1) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    3179 1n3p:B (2.1) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    3180 1n3q:A (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    3181 1n3q:B (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    3182 1n41:A (2.1) BS01 CA ? GO:0001786 ... P14668 12401794
    3183 1n41:A (2.1) BS02 CA ? GO:0001786 ... P14668 12401794
    3184 1n41:A (2.1) BS03 CA ? GO:0001786 ... P14668 12401794
    3185 1n41:A (2.1) BS04 CA ? GO:0001786 ... P14668 12401794
    3186 1n41:A (2.1) BS05 CA ? GO:0001786 ... P14668 12401794
    3187 1n42:A (2.1) BS01 CA ? GO:0001786 ... P14668 12401794
    3188 1n42:A (2.1) BS02 CA ? GO:0001786 ... P14668 12401794
    3189 1n42:A (2.1) BS03 CA ? GO:0001786 ... P14668 12401794
    3190 1n42:A (2.1) BS04 CA ? GO:0001786 ... P14668 12401794
    3191 1n42:A (2.1) BS05 CA ? GO:0001786 ... P14668 12401794
    3192 1n44:A (3.0) BS01 CA ? GO:0001786 ... P14668 12401794
    3193 1n44:A (3.0) BS02 CA ? GO:0001786 ... P14668 12401794
    3194 1n47:A (2.7) BS02 CA ? GO:0030246 ... P56625 12586347
    3195 1n47:B (2.7) BS02 CA ? GO:0030246 ... P56625 12586347
    3196 1n47:C (2.7) BS01 CA ? GO:0030246 ... P56625 12586347
    3197 1n47:D (2.7) BS01 CA ? GO:0030246 ... P56625 12586347
    3198 1n48:A (2.2) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 N/A
    3199 1n48:A (2.2) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 N/A
    3200 1n56:B (2.4) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 15023344

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218