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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31001 6jlp:c (2.5) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    31002 6jlp:o (2.5) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    31003 6jp4:A (2.069) BS03 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31004 6jp4:A (2.069) BS04 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31005 6jp4:B (2.069) BS03 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31006 6jp4:B (2.069) BS04 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31007 6jp4:C (2.069) BS03 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31008 6jp4:C (2.069) BS04 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31009 6jp5:A (2.9) BS01 CA ? GO:0005216 ... P07293 31150622
    31010 6jp5:F (2.9) BS01 CA ? N/A P13806 31150622
    31011 6jp8:A (2.7) BS02 CA ? GO:0005216 ... P07293 31150622
    31012 6jp8:A (2.7) BS03 CA ? GO:0005216 ... P07293 31150622
    31013 6jpa:A (2.6) BS01 CA ? GO:0005216 ... P07293 31150622
    31014 6jpa:A (2.6) BS02 CA ? GO:0005216 ... P07293 31150622
    31015 6jpa:F (2.6) BS01 CA ? GO:0005245 ... P13806 31150622
    31016 6jpb:A (2.9) BS01 CA ? GO:0005216 ... P07293 31150622
    31017 6jpb:A (2.9) BS02 CA ? GO:0005216 ... P07293 31150622
    31018 6jpb:F (2.9) BS01 CA ? GO:0005245 ... P13806 31150622
    31019 6jph:A (2.759) BS05 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31020 6jph:A (2.759) BS06 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31021 6jpn:A (2.85) BS07 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31022 6jpn:A (2.85) BS08 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    31023 6jq9:A (1.81) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 31751708
    31024 6jq9:A (1.81) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 31751708
    31025 6jq9:B (1.81) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 31751708
    31026 6jq9:B (1.81) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 31751708
    31027 6jqb:A (1.101) BS01 CA 3.2.1.60 GO:0004556 ... P22963 31751711
    31028 6jqb:A (1.101) BS02 CA 3.2.1.60 GO:0004556 ... P22963 31751711
    31029 6jrf:A (2.047) BS03 CA ? GO:0008821 ... B4FCI7 31611704
    31030 6jrf:A (2.047) BS04 CA ? GO:0008821 ... B4FCI7 31611704
    31031 6jrf:B (2.047) BS03 CA ? GO:0008821 ... B4FCI7 31611704
    31032 6jrf:B (2.047) BS04 CA ? GO:0008821 ... B4FCI7 31611704
    31033 6jrr:A (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    31034 6jrr:C (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    31035 6jrr:E (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    31036 6jrr:G (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    31037 6jrs:A (3.7) BS02 CA N/A GO:0005216 ... N/A 31278385
    31038 6jrs:D (3.7) BS02 CA N/A GO:0005216 ... N/A 31278385
    31039 6jrs:G (3.7) BS02 CA N/A GO:0005216 ... N/A 31278385
    31040 6jrs:J (3.7) BS02 CA N/A GO:0005216 ... N/A 31278385
    31041 6jt5:A (1.5) BS01 CA ? N/A A8P0V4 31604769
    31042 6jtt:A (2.51) BS02 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    31043 6jtt:B (2.51) BS02 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    31044 6jtt:C (2.51) BS02 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    31045 6jtu:A (2.1) BS01 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    31046 6jtu:B (2.1) BS01 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    31047 6jtu:C (2.1) BS01 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    31048 6jv2:A (4.4) BS02 CA N/A GO:0005216 ... N/A 31278385
    31049 6jv2:B (4.4) BS01 CA ? GO:0000086 ... P0DP23 31278385
    31050 6jv2:B (4.4) BS02 CA ? GO:0000086 ... P0DP23 31278385
    31051 6jv2:B (4.4) BS03 CA ? GO:0000086 ... P0DP23 31278385
    31052 6jv2:B (4.4) BS04 CA ? GO:0000086 ... P0DP23 31278385
    31053 6jv2:C (4.4) BS02 CA N/A GO:0005216 ... N/A 31278385
    31054 6jv2:D (4.4) BS01 CA ? GO:0000086 ... P0DP23 31278385
    31055 6jv2:D (4.4) BS02 CA ? GO:0000086 ... P0DP23 31278385
    31056 6jv2:D (4.4) BS03 CA ? GO:0000086 ... P0DP23 31278385
    31057 6jv2:D (4.4) BS04 CA ? GO:0000086 ... P0DP23 31278385
    31058 6jv2:E (4.4) BS02 CA N/A GO:0005216 ... N/A 31278385
    31059 6jv2:F (4.4) BS01 CA ? GO:0000086 ... P0DP23 31278385
    31060 6jv2:F (4.4) BS02 CA ? GO:0000086 ... P0DP23 31278385
    31061 6jv2:F (4.4) BS03 CA ? GO:0000086 ... P0DP23 31278385
    31062 6jv2:F (4.4) BS04 CA ? GO:0000086 ... P0DP23 31278385
    31063 6jv2:G (4.4) BS02 CA N/A GO:0005216 ... N/A 31278385
    31064 6jv2:H (4.4) BS01 CA ? GO:0000086 ... P0DP23 31278385
    31065 6jv2:H (4.4) BS02 CA ? GO:0000086 ... P0DP23 31278385
    31066 6jv2:H (4.4) BS03 CA ? GO:0000086 ... P0DP23 31278385
    31067 6jv2:H (4.4) BS04 CA ? GO:0000086 ... P0DP23 31278385
    31068 6jwf:A (1.3) BS01 CA ? N/A A8P0V4 31604769
    31069 6jwf:B (1.3) BS01 CA ? N/A A8P0V4 31604769
    31070 6jwq:A (2.5) BS03 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31071 6jwr:A (2.6) BS05 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31072 6jwr:B (2.6) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31073 6jws:A (2.3) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31074 6jws:B (2.3) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31075 6jwt:A (2.56) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31076 6jwt:B (2.56) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31077 6jwu:A (2.65) BS05 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31078 6jwu:B (2.65) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31079 6jwv:A (2.7) BS05 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31080 6jwv:B (2.7) BS02 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31081 6jww:A (2.75) BS05 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31082 6jww:B (2.75) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31083 6jwx:A (2.5) BS05 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31084 6jwx:B (2.5) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31085 6jwy:A (2.5) BS06 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31086 6jwz:A (2.95) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31087 6jwz:B (2.95) BS04 CA 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q25704 31883412
    31088 6k0m:A (1.6) BS01 CA ? N/A A0A068PS59 31788942
    31089 6k0n:A (1.6) BS07 CA ? N/A A0A068PS59 31788942
    31090 6k0p:A (1.424) BS07 CA ? N/A A0A068PS59 31788942
    31091 6k0q:A (1.564) BS07 CA ? N/A A0A068PS59 31788942
    31092 6k0s:A (1.534) BS07 CA ? N/A A0A068PS59 31788942
    31093 6k0u:A (1.95) BS06 CA ? N/A A0A068PS59 31788942
    31094 6k0v:A (2.504) BS07 CA ? N/A A0A068PS59 31788942
    31095 6k0v:B (2.504) BS07 CA ? N/A A0A068PS59 31788942
    31096 6k0v:C (2.504) BS06 CA ? N/A A0A068PS59 31788942
    31097 6k0v:D (2.504) BS04 CA ? N/A A0A068PS59 31788942
    31098 6k22:A (2.747) BS01 CA ? GO:0001786 ... P08758 31605770
    31099 6k22:A (2.747) BS02 CA ? GO:0001786 ... P08758 31605770
    31100 6k22:A (2.747) BS03 CA ? GO:0001786 ... P08758 31605770
    31101 6k2p:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31102 6k2p:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31103 6k2r:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31104 6k2r:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31105 6k2s:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31106 6k2s:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31107 6k2t:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31108 6k2t:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31109 6k2v:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31110 6k2v:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31111 6k2w:A (1.7) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31112 6k2w:A (1.7) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    31113 6k33:aL (2.74) BS07 CA N/A GO:0009522 ... N/A 32393811
    31114 6k33:bL (2.74) BS09 CA N/A GO:0009522 ... N/A 32393811
    31115 6k33:cL (2.74) BS02 CA N/A GO:0009522 ... N/A 32393811
    31116 6k4k:C (2.715) BS01 CA ? GO:0000086 ... P0DP23 31330531
    31117 6k4k:D (2.715) BS01 CA ? GO:0000086 ... P0DP23 31330531
    31118 6k4l:C (2.949) BS01 CA ? GO:0000086 ... P0DP23 31330531
    31119 6k4l:D (2.949) BS01 CA ? GO:0000086 ... P0DP23 31330531
    31120 6k4r:C (3.109) BS01 CA ? GO:0000086 ... P0DP23 31330531
    31121 6k4r:D (3.109) BS01 CA ? GO:0000086 ... P0DP23 31330531
    31122 6k52:A (1.68) BS01 CA N/A GO:0004553 ... N/A N/A
    31123 6k52:A (1.68) BS02 CA N/A GO:0004553 ... N/A N/A
    31124 6k54:A (1.905) BS07 CA N/A GO:0004553 ... N/A N/A
    31125 6k54:A (1.905) BS08 CA N/A GO:0004553 ... N/A N/A
    31126 6k54:B (1.905) BS04 CA N/A GO:0004553 ... N/A N/A
    31127 6k54:B (1.905) BS05 CA N/A GO:0004553 ... N/A N/A
    31128 6k54:C (1.905) BS04 CA N/A GO:0004553 ... N/A N/A
    31129 6k54:C (1.905) BS05 CA N/A GO:0004553 ... N/A N/A
    31130 6k5p:A (1.805) BS01 CA 3.2.1.20 GO:0005975 ... B0X223 31449868
    31131 6k5p:B (1.805) BS02 CA 3.2.1.20 GO:0005975 ... B0X223 31449868
    31132 6k5p:C (1.805) BS01 CA 3.2.1.20 GO:0005975 ... B0X223 31449868
    31133 6k5p:D (1.805) BS02 CA 3.2.1.20 GO:0005975 ... B0X223 31449868
    31134 6k67:B (1.95) BS01 CA ? GO:0005509 ... P0DP25 31371498
    31135 6k67:B (1.95) BS02 CA ? GO:0005509 ... P0DP25 31371498
    31136 6k67:D (1.95) BS01 CA ? GO:0005509 ... P0DP25 31371498
    31137 6k67:D (1.95) BS02 CA ? GO:0005509 ... P0DP25 31371498
    31138 6k6t:A (2.2) BS02 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    31139 6k6t:A (2.2) BS03 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    31140 6k6t:B (2.2) BS02 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    31141 6k6t:B (2.2) BS03 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    31142 6k6t:C (2.2) BS02 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    31143 6k6t:C (2.2) BS03 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    31144 6k6t:D (2.2) BS02 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    31145 6k6t:D (2.2) BS03 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    31146 6k83:A (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31147 6k83:A (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31148 6k83:A (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31149 6k83:B (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31150 6k83:B (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31151 6k83:B (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31152 6k83:C (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31153 6k83:C (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31154 6k83:C (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31155 6k83:D (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31156 6k83:D (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31157 6k83:D (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31158 6k83:E (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31159 6k83:E (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31160 6k83:E (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31161 6k83:F (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31162 6k83:F (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31163 6k83:F (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31164 6k83:G (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31165 6k83:G (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31166 6k83:G (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31167 6k83:H (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31168 6k83:H (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31169 6k83:H (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31170 6k88:A (1.788) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    31171 6k88:A (1.788) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31172 6k88:A (1.788) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31173 6k88:A (1.788) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31174 6k88:B (1.788) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    31175 6k88:B (1.788) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31176 6k88:B (1.788) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31177 6k88:B (1.788) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    31178 6k8a:A (2.4) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    31179 6k8a:A (2.4) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31180 6k8a:A (2.4) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31181 6k8a:B (2.4) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    31182 6k8a:B (2.4) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31183 6k8a:B (2.4) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31184 6k8b:A (2.21) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    31185 6k8b:A (2.21) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31186 6k8b:A (2.21) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31187 6k8b:B (2.21) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    31188 6k8b:B (2.21) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    31189 6k8b:B (2.21) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    31190 6k8z:B (1.9) BS02 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31191 6k8z:B (1.9) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31192 6k90:A (1.9) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31193 6k90:A (1.9) BS04 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31194 6k90:B (1.9) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31195 6k91:A (2.0) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31196 6k91:A (2.0) BS04 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31197 6k91:B (2.0) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31198 6k92:A (1.85) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31199 6k92:B (1.85) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    31200 6k92:B (1.85) BS04 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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