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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30801 6iqq:D (2.8) BS01 CA 3.4.21.102 GO:0006508 ... P23865 31387902
    30802 6is3:C (1.549) BS01 CA ? GO:0000160 ... Q2YY03 31598698
    30803 6is7:A (2.8) BS05 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30804 6is7:A (2.8) BS06 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30805 6is7:B (2.8) BS04 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30806 6is7:B (2.8) BS05 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30807 6is7:B (2.8) BS06 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30808 6isf:A (2.8) BS03 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30809 6isf:B (2.8) BS03 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30810 6isf:B (2.8) BS04 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30811 6isf:B (2.8) BS05 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30812 6ish:A (3.3) BS03 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30813 6isi:A (3.2) BS03 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    30814 6iss:A (1.53) BS02 CA 1.11.1.14 GO:0000302 ... P06181 N/A
    30815 6iss:A (1.53) BS03 CA 1.11.1.14 GO:0000302 ... P06181 N/A
    30816 6iss:G (1.53) BS02 CA 1.11.1.14 GO:0000302 ... P06181 N/A
    30817 6iss:G (1.53) BS03 CA 1.11.1.14 GO:0000302 ... P06181 N/A
    30818 6ist:C (1.75) BS01 CA ? GO:0046872 ... S5MRN1 32176738
    30819 6iwk:A (1.501) BS01 CA 3.2.1.60 GO:0004556 ... P22963 31751711
    30820 6iwk:A (1.501) BS02 CA 3.2.1.60 GO:0004556 ... P22963 31751711
    30821 6ixx:A (1.999) BS01 CA ? GO:0004222 ... D0VMS8 N/A
    30822 6ixx:A (1.999) BS02 CA ? GO:0004222 ... D0VMS8 N/A
    30823 6ixx:A (1.999) BS03 CA ? GO:0004222 ... D0VMS8 N/A
    30824 6ixx:A (1.999) BS04 CA ? GO:0004222 ... D0VMS8 N/A
    30825 6ixx:A (1.999) BS05 CA ? GO:0004222 ... D0VMS8 N/A
    30826 6ixx:A (1.999) BS06 CA ? GO:0004222 ... D0VMS8 N/A
    30827 6ixx:A (1.999) BS07 CA ? GO:0004222 ... D0VMS8 N/A
    30828 6ixx:A (1.999) BS08 CA ? GO:0004222 ... D0VMS8 N/A
    30829 6iyg:A (1.5) BS05 CA 3.2.1.60 GO:0004556 ... P22963 N/A
    30830 6iyg:A (1.5) BS06 CA 3.2.1.60 GO:0004556 ... P22963 N/A
    30831 6j02:A (1.803) BS01 CA ? GO:0016020 ... P30204 31653705
    30832 6j02:B (1.803) BS01 CA ? GO:0016020 ... P30204 31653705
    30833 6j03:A (1.48) BS02 CA ? GO:0046872 ... V5TER4 N/A
    30834 6j06:B (2.65) BS02 CA ? N/A O00481 30902636
    30835 6j33:B (1.297) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    30836 6j35:B (1.839) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    30837 6j3x:A (1.62) BS04 CA 3.2.1.60 GO:0004556 ... P22963 N/A
    30838 6j3x:A (1.62) BS05 CA 3.2.1.60 GO:0004556 ... P22963 N/A
    30839 6j42:A (2.492) BS03 CA ? GO:0046872 ... Q8YSJ5 30993731
    30840 6j42:B (2.492) BS03 CA ? GO:0046872 ... Q8YSJ5 30993731
    30841 6j42:B (2.492) BS04 CA ? GO:0046872 ... Q8YSJ5 30993731
    30842 6j42:C (2.492) BS01 CA ? GO:0046872 ... Q8YSJ5 30993731
    30843 6j42:C (2.492) BS04 CA ? GO:0046872 ... Q8YSJ5 30993731
    30844 6j43:A (1.85) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32280322
    30845 6j43:A (1.85) BS02 CA 3.4.21.64 GO:0004252 ... P06873 32280322
    30846 6j4h:A (1.641) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    30847 6j66:A (1.953) BS01 CA 3.1.6.12 N/A A0A0C5AQI9 31244815
    30848 6j66:B (1.953) BS01 CA 3.1.6.12 N/A A0A0C5AQI9 31244815
    30849 6j7q:A (1.85) BS03 CA ? GO:0000166 ... P96356 32382148
    30850 6j7q:A (1.85) BS04 CA ? GO:0000166 ... P96356 32382148
    30851 6j7q:A (1.85) BS05 CA ? GO:0000166 ... P96356 32382148
    30852 6jai:A (2.1) BS03 CA ? N/A Q5SLD7 31608555
    30853 6jau:A (1.905) BS01 CA ? GO:0005515 ... P38108 32747658
    30854 6jbk:A (2.45) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    30855 6jbk:C (2.45) BS04 CA 3.6.4.- GO:0000287 ... P68135 N/A
    30856 6jbk:E (2.45) BS04 CA 3.6.4.- GO:0000287 ... P68135 N/A
    30857 6jbk:G (2.45) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    30858 6jcj:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 30803758
    30859 6jcj:C (2.5) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 30803758
    30860 6jd9:A (1.58) BS01 CA 3.1.1.3 GO:0004806 ... A0A1Z1SX23 31297153
    30861 6jdo:A (2.002) BS02 CA 2.7.1.60 GO:0005524 ... Q9CKB3 N/A
    30862 6jdo:B (2.002) BS01 CA 2.7.1.60 GO:0005524 ... Q9CKB3 N/A
    30863 6jdo:B (2.002) BS02 CA 2.7.1.60 GO:0005524 ... Q9CKB3 N/A
    30864 6jdu:A (2.81) BS04 CA 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    30865 6jeq:A (1.802) BS05 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    30866 6jfj:A (1.932) BS08 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    30867 6jfm:A (2.09) BS01 CA 3.6.5.- GO:0003924 ... O95140 31664033
    30868 6jfm:A (2.09) BS02 CA 3.6.5.- GO:0003924 ... O95140 31664033
    30869 6jfm:B (2.09) BS01 CA 3.6.5.- GO:0003924 ... O95140 31664033
    30870 6jfx:A (1.981) BS07 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    30871 6jh5:A (1.54) BS01 CA N/A GO:0004553 ... N/A 32917756
    30872 6jh8:A (2.149) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    30873 6jh9:A (1.739) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    30874 6jhf:A (1.71) BS01 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    30875 6jhg:A (1.891) BS01 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    30876 6jhh:A (2.025) BS08 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    30877 6jhi:A (2.319) BS06 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    30878 6jhi:A (2.319) BS07 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    30879 6jhj:A (1.69) BS01 CA N/A GO:0004553 ... N/A 32917756
    30880 6jhn:A (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    30881 6jhn:C (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    30882 6jhn:E (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    30883 6jhn:G (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    30884 6ji0:A (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    30885 6ji0:C (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    30886 6ji0:E (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    30887 6ji0:G (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    30888 6jia:A (1.9) BS04 CA N/A GO:0004553 ... N/A 32917756
    30889 6jii:B (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    30890 6jii:E (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    30891 6jii:H (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    30892 6jii:K (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    30893 6jiu:A (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    30894 6jiu:C (4.2) BS01 CA ? GO:0000086 ... P0DP23 31278385
    30895 6jiu:D (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    30896 6jiu:F (4.2) BS01 CA ? GO:0000086 ... P0DP23 31278385
    30897 6jiu:G (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    30898 6jiu:I (4.2) BS01 CA ? GO:0000086 ... P0DP23 31278385
    30899 6jiu:J (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    30900 6jiu:L (4.2) BS01 CA ? GO:0000086 ... P0DP23 31278385
    30901 6jiy:A (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    30902 6jiy:C (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    30903 6jiy:C (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    30904 6jiy:C (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    30905 6jiy:D (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    30906 6jiy:F (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    30907 6jiy:F (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    30908 6jiy:F (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    30909 6jiy:G (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    30910 6jiy:I (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    30911 6jiy:I (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    30912 6jiy:I (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    30913 6jiy:J (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    30914 6jiy:L (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    30915 6jiy:L (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    30916 6jiy:L (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    30917 6jja:A (2.91) BS01 CA ? GO:0019013 ... Q15BP7 N/A
    30918 6jjc:A (2.92) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    30919 6jjc:A (2.92) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    30920 6jjc:A (2.92) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    30921 6jjc:A (2.92) BS04 CA ? GO:0044423 ... Q15BP6 N/A
    30922 6jjc:B (2.92) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    30923 6jjc:B (2.92) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    30924 6jjc:B (2.92) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    30925 6jjc:B (2.92) BS04 CA ? GO:0044423 ... Q15BP6 N/A
    30926 6jjc:B (2.92) BS05 CA ? GO:0044423 ... Q15BP6 N/A
    30927 6jjc:C (2.92) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    30928 6jjc:C (2.92) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    30929 6jjc:C (2.92) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    30930 6jjd:A (3.21) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    30931 6jjd:A (3.21) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    30932 6jjd:A (3.21) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    30933 6jjd:B (3.21) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    30934 6jjd:B (3.21) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    30935 6jjd:B (3.21) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    30936 6jjd:B (3.21) BS04 CA ? GO:0044423 ... Q15BP6 N/A
    30937 6jjd:C (3.21) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    30938 6jjd:C (3.21) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    30939 6jjd:C (3.21) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    30940 6jjj:A (2.792) BS01 CA ? N/A P70194 31369681
    30941 6jjj:A (2.792) BS02 CA ? N/A P70194 31369681
    30942 6jjj:B (2.792) BS01 CA ? N/A P70194 31369681
    30943 6jjj:B (2.792) BS02 CA ? N/A P70194 31369681
    30944 6jjj:C (2.792) BS01 CA ? N/A P70194 31369681
    30945 6jjj:C (2.792) BS02 CA ? N/A P70194 31369681
    30946 6jjj:D (2.792) BS01 CA ? N/A P70194 31369681
    30947 6jjj:D (2.792) BS02 CA ? N/A P70194 31369681
    30948 6jjj:E (2.792) BS01 CA ? N/A P70194 31369681
    30949 6jjj:E (2.792) BS02 CA ? N/A P70194 31369681
    30950 6jjj:F (2.792) BS01 CA ? N/A P70194 31369681
    30951 6jjj:F (2.792) BS02 CA ? N/A P70194 31369681
    30952 6jju:A (3.2) BS03 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    30953 6jju:A (3.2) BS04 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    30954 6jk4:A (1.06) BS01 CA ? GO:0038023 ... P84493 31035615
    30955 6jl9:A (2.0) BS01 CA ? GO:0005509 ... F6VRB7 31316816
    30956 6jlh:A (2.37) BS02 CA ? GO:0005509 ... Q5XJX1 32156735
    30957 6jlh:A (2.37) BS03 CA ? GO:0005509 ... Q5XJX1 32156735
    30958 6jlh:A (2.37) BS04 CA ? GO:0005509 ... Q5XJX1 32156735
    30959 6jlh:A (2.37) BS05 CA ? GO:0005509 ... Q5XJX1 32156735
    30960 6jlh:A (2.37) BS06 CA ? GO:0005509 ... Q5XJX1 32156735
    30961 6jlh:A (2.37) BS07 CA ? GO:0005509 ... Q5XJX1 32156735
    30962 6jlh:C (2.37) BS02 CA ? GO:0005509 ... Q5XJX1 32156735
    30963 6jlh:C (2.37) BS03 CA ? GO:0005509 ... Q5XJX1 32156735
    30964 6jlh:C (2.37) BS04 CA ? GO:0005509 ... Q5XJX1 32156735
    30965 6jlh:C (2.37) BS05 CA ? GO:0005509 ... Q5XJX1 32156735
    30966 6jlh:C (2.37) BS06 CA ? GO:0005509 ... Q5XJX1 32156735
    30967 6jlh:C (2.37) BS07 CA ? GO:0005509 ... Q5XJX1 32156735
    30968 6jlj:C (2.15) BS15 CA ? GO:0005737 ... D0VWR7 31624207
    30969 6jlj:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30970 6jlj:c (2.15) BS02 CA ? GO:0005737 ... D0VWR7 31624207
    30971 6jlj:c (2.15) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    30972 6jlj:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30973 6jlk:C (2.15) BS15 CA ? GO:0005737 ... D0VWR7 31624207
    30974 6jlk:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30975 6jlk:c (2.15) BS02 CA ? GO:0005737 ... D0VWR7 31624207
    30976 6jlk:c (2.15) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    30977 6jlk:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30978 6jll:C (2.15) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    30979 6jll:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30980 6jll:c (2.15) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    30981 6jll:c (2.15) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    30982 6jll:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30983 6jlm:C (2.35) BS15 CA ? GO:0005737 ... D0VWR7 31624207
    30984 6jlm:O (2.35) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30985 6jlm:c (2.35) BS02 CA ? GO:0005737 ... D0VWR7 31624207
    30986 6jlm:c (2.35) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    30987 6jlm:o (2.35) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30988 6jln:C (2.4) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    30989 6jln:O (2.4) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30990 6jln:c (2.4) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    30991 6jln:c (2.4) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    30992 6jln:o (2.4) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30993 6jlo:C (2.4) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    30994 6jlo:O (2.4) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30995 6jlo:c (2.4) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    30996 6jlo:c (2.4) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    30997 6jlo:o (2.4) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    30998 6jlp:C (2.5) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    30999 6jlp:O (2.5) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    31000 6jlp:c (2.5) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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