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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30401 6gxv:A (2.07) BS07 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30402 6gxv:A (2.07) BS08 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30403 6gxv:A (2.07) BS09 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30404 6gxv:B (2.07) BS11 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30405 6gxv:B (2.07) BS12 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30406 6gxv:B (2.07) BS13 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30407 6gya:A (2.95) BS03 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30408 6gya:A (2.95) BS04 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30409 6gya:A (2.95) BS05 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30410 6gya:B (2.95) BS03 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30411 6gya:B (2.95) BS04 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30412 6gya:B (2.95) BS05 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30413 6gya:C (2.95) BS02 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30414 6gya:C (2.95) BS03 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30415 6gya:C (2.95) BS04 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30416 6gya:D (2.95) BS04 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30417 6gya:D (2.95) BS05 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30418 6gya:D (2.95) BS06 CA ? GO:0004553 ... A0A3P8MUS3 30644839
    30419 6gyi:B (1.6) BS02 CA ? GO:0005507 ... P00282 N/A
    30420 6gyi:C (1.6) BS02 CA ? GO:0005507 ... P00282 N/A
    30421 6gze:A (2.49) BS02 CA 3.6.5.- GO:0000226 ... P81947 32151315
    30422 6gze:C (2.49) BS02 CA 3.6.5.- GO:0000226 ... P81947 32151315
    30423 6h0a:A (2.1) BS01 CA N/A GO:0004064 ... N/A 31873734
    30424 6h0a:A (2.1) BS02 CA N/A GO:0004064 ... N/A 31873734
    30425 6h2b:A (3.28) BS01 CA ? GO:0044423 ... X2FE19 30346944
    30426 6h2b:A (3.28) BS02 CA ? GO:0044423 ... X2FE19 30346944
    30427 6h2b:A (3.28) BS03 CA ? GO:0044423 ... X2FE19 30346944
    30428 6h2b:A (3.28) BS04 CA ? GO:0044423 ... X2FE19 30346944
    30429 6h2b:B (3.28) BS01 CA ? GO:0044423 ... X2FE19 30346944
    30430 6h2b:B (3.28) BS02 CA ? GO:0044423 ... X2FE19 30346944
    30431 6h2b:C (3.28) BS01 CA ? GO:0044423 ... X2FE19 30346944
    30432 6h2b:C (3.28) BS02 CA ? GO:0044423 ... X2FE19 30346944
    30433 6h2b:C (3.28) BS03 CA ? GO:0044423 ... X2FE19 30346944
    30434 6h2m:A (1.929) BS02 CA ? GO:0030246 ... P02866 30821707
    30435 6h6n:A (2.12) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    30436 6h6n:A (2.12) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    30437 6h6n:A (2.12) BS03 CA ? GO:0032150 ... P0ADP7 30686758
    30438 6h6n:A (2.12) BS04 CA ? GO:0032150 ... P0ADP7 30686758
    30439 6h6n:B (2.12) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    30440 6h6o:A (1.7) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    30441 6h6o:A (1.7) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    30442 6h6o:A (1.7) BS03 CA ? GO:0032150 ... P0ADP7 30686758
    30443 6h6o:B (1.7) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    30444 6h6p:A (2.5) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    30445 6h6p:A (2.5) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    30446 6h6p:A (2.5) BS03 CA ? GO:0032150 ... P0ADP7 30686758
    30447 6h6p:A (2.5) BS04 CA ? GO:0032150 ... P0ADP7 30686758
    30448 6h6p:A (2.5) BS05 CA ? GO:0032150 ... P0ADP7 30686758
    30449 6h6p:A (2.5) BS06 CA ? GO:0032150 ... P0ADP7 30686758
    30450 6h6p:B (2.5) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    30451 6h6p:B (2.5) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    30452 6h6p:C (2.5) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    30453 6h6p:C (2.5) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    30454 6h6p:D (2.5) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    30455 6h6p:D (2.5) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    30456 6h6u:A (2.0) BS03 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    30457 6h6u:B (2.0) BS03 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    30458 6h6u:C (2.0) BS03 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    30459 6h6u:D (2.0) BS03 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    30460 6h6u:E (2.0) BS01 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    30461 6h6u:F (2.0) BS01 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    30462 6h6v:A (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    30463 6h6v:B (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    30464 6h6v:C (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    30465 6h6v:D (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    30466 6h6v:E (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    30467 6h6v:F (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    30468 6h6x:A (2.25) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    30469 6h6x:B (2.25) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    30470 6h7t:A (2.1) BS01 CA ? N/A A0A024S820 31604773
    30471 6h7y:A (1.81) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 30429952
    30472 6h7z:A (2.0) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30429952
    30473 6h9x:A (2.1) BS02 CA 6.1.1.11 GO:0000166 ... W9BNU9 31048140
    30474 6ha3:A (1.08) BS02 CA 2.2.1.1 GO:0000287 ... P29401 31534226
    30475 6had:A (1.04) BS01 CA 2.2.1.1 GO:0000287 ... P29401 31534226
    30476 6har:A (1.497) BS01 CA ? GO:0004252 ... Q8N2U3 30700553
    30477 6hbe:A (1.63) BS04 CA 1.7.2.1 GO:0005507 ... E8PLV7 30867922
    30478 6hbe:B (1.63) BS04 CA 1.7.2.1 GO:0005507 ... E8PLV7 30867922
    30479 6hbe:C (1.63) BS04 CA 1.7.2.1 GO:0005507 ... E8PLV7 30867922
    30480 6hcs:A (2.0) BS02 CA ? GO:0000086 ... P0DP23 30474048
    30481 6hcs:A (2.0) BS03 CA ? GO:0000086 ... P0DP23 30474048
    30482 6hcs:A (2.0) BS04 CA ? GO:0000086 ... P0DP23 30474048
    30483 6hcs:A (2.0) BS05 CA ? GO:0000086 ... P0DP23 30474048
    30484 6hcs:C (2.0) BS02 CA ? GO:0000086 ... P0DP23 30474048
    30485 6hcs:C (2.0) BS03 CA ? GO:0000086 ... P0DP23 30474048
    30486 6hcs:C (2.0) BS04 CA ? GO:0000086 ... P0DP23 30474048
    30487 6hcs:C (2.0) BS05 CA ? GO:0000086 ... P0DP23 30474048
    30488 6hcs:E (2.0) BS02 CA ? GO:0000086 ... P0DP23 30474048
    30489 6hcs:E (2.0) BS03 CA ? GO:0000086 ... P0DP23 30474048
    30490 6hcs:E (2.0) BS04 CA ? GO:0000086 ... P0DP23 30474048
    30491 6hcs:E (2.0) BS05 CA ? GO:0000086 ... P0DP23 30474048
    30492 6hcs:G (2.0) BS02 CA ? GO:0000086 ... P0DP23 30474048
    30493 6hcs:G (2.0) BS03 CA ? GO:0000086 ... P0DP23 30474048
    30494 6hcs:G (2.0) BS04 CA ? GO:0000086 ... P0DP23 30474048
    30495 6hcs:G (2.0) BS05 CA ? GO:0000086 ... P0DP23 30474048
    30496 6hcx:A (1.3) BS01 CA 3.2.1.18 GO:0004308 ... P03472 N/A
    30497 6heb:A (1.75) BS01 CA 3.2.1.18 GO:0004308 ... P03472 N/A
    30498 6hef:A (3.538) BS02 CA 7.2.2.10 GO:0000166 ... P04191 30605135
    30499 6hef:A (3.538) BS03 CA 7.2.2.10 GO:0000166 ... P04191 30605135
    30500 6hef:A (3.538) BS04 CA 7.2.2.10 GO:0000166 ... P04191 30605135
    30501 6hf2:A (1.69) BS01 CA N/A GO:0004553 ... N/A 31000630
    30502 6hf4:A (1.781) BS03 CA N/A GO:0004553 ... N/A 31000630
    30503 6hfc:A (1.29) BS01 CA 3.2.1.18 GO:0004308 ... P03472 N/A
    30504 6hfy:A (1.65) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30505 6hfy:B (1.65) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30506 6hfy:C (1.65) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30507 6hfy:D (1.65) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30508 6hg0:A (1.3) BS01 CA 3.2.1.18 GO:0004308 ... P03472 N/A
    30509 6hg5:A (1.6) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30510 6hg5:B (1.6) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30511 6hg5:C (1.6) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30512 6hg5:D (1.6) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30513 6hgb:A (1.5) BS05 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30514 6hgb:B (1.5) BS05 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30515 6hgb:C (1.5) BS04 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30516 6hgb:D (1.5) BS05 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    30517 6hgm:A (1.369) BS01 CA ? GO:0003677 ... P01011 31103428
    30518 6hhm:A (1.23) BS01 CA 3.1.6.- GO:0004423 ... T2KPK5 31285597
    30519 6hhy:A (2.27) BS02 CA 6.1.1.11 GO:0000166 ... A6T6Z0 31869198
    30520 6hhz:A (2.15) BS02 CA 6.1.1.11 GO:0000166 ... A6T6Z0 31869198
    30521 6hi0:A (2.25) BS02 CA 6.1.1.11 GO:0000166 ... A6T6Z0 31869198
    30522 6hk9:A (1.454) BS01 CA ? N/A Q9BXU0 N/A
    30523 6hk9:A (1.454) BS02 CA ? N/A Q9BXU0 N/A
    30524 6hk9:B (1.454) BS01 CA ? N/A Q9BXU0 N/A
    30525 6hk9:B (1.454) BS02 CA ? N/A Q9BXU0 N/A
    30526 6hk9:B (1.454) BS03 CA ? N/A Q9BXU0 N/A
    30527 6hkj:A (2.09) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30429952
    30528 6hkz:A (2.09) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30429952
    30529 6hlb:A (2.0) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30530 6hlb:A (2.0) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30531 6hlb:A (2.0) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30532 6hld:A (2.1) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30533 6hld:A (2.1) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30534 6hld:A (2.1) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30535 6hle:A (1.994) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30536 6hle:A (1.994) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30537 6hle:A (1.994) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30538 6hm3:A (1.77264) BS02 CA ? N/A P32372 30295604
    30539 6hm3:A (1.77264) BS03 CA ? N/A P32372 30295604
    30540 6hmf:B (2.6) BS03 CA 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 30657780
    30541 6hos:A (2.15) BS02 CA ? N/A A0A1B2JGH2 30425696
    30542 6hos:B (2.15) BS02 CA ? N/A A0A1B2JGH2 30425696
    30543 6hp0:A (1.88) BS01 CA 3.2.1.18 GO:0004308 ... C6KP13 31128993
    30544 6hp0:A (1.88) BS02 CA 3.2.1.18 GO:0004308 ... C6KP13 31128993
    30545 6hp0:B (1.88) BS01 CA 3.2.1.18 GO:0004308 ... C6KP13 31128993
    30546 6hp0:B (1.88) BS02 CA 3.2.1.18 GO:0004308 ... C6KP13 31128993
    30547 6hp0:C (1.88) BS02 CA 3.2.1.18 GO:0004308 ... C6KP13 31128993
    30548 6hp0:C (1.88) BS03 CA 3.2.1.18 GO:0004308 ... C6KP13 31128993
    30549 6hp0:D (1.88) BS01 CA 3.2.1.18 GO:0004308 ... C6KP13 31128993
    30550 6hp0:D (1.88) BS02 CA 3.2.1.18 GO:0004308 ... C6KP13 31128993
    30551 6hq5:A (2.83) BS03 CA ? GO:0000166 ... Q6MLN6 31355487
    30552 6hq5:A (2.83) BS04 CA ? GO:0000166 ... Q6MLN6 31355487
    30553 6hq5:B (2.83) BS04 CA ? GO:0000166 ... Q6MLN6 31355487
    30554 6hq5:B (2.83) BS05 CA ? GO:0000166 ... Q6MLN6 31355487
    30555 6hqb:B (4.0) BS50 CA 1.97.1.12 GO:0000287 ... P29255 30662446
    30556 6hqb:L (4.0) BS05 CA ? GO:0009522 ... P37277 30662446
    30557 6hr1:A (1.901) BS01 CA 2.7.11.18 GO:0000086 ... P07313
    P0DP23
    P42212
    P79114    		 34587504
    30558 6hr1:A (1.901) BS02 CA 2.7.11.18 GO:0000086 ... P07313
    P0DP23
    P42212
    P79114    		 34587504
    30559 6hr1:A (1.901) BS03 CA 2.7.11.18 GO:0000086 ... P07313
    P0DP23
    P42212
    P79114    		 34587504
    30560 6hr1:A (1.901) BS04 CA 2.7.11.18 GO:0000086 ... P07313
    P0DP23
    P42212
    P79114    		 34587504
    30561 6hr1:B (1.901) BS01 CA 2.7.11.18 GO:0000086 ... P07313
    P0DP23
    P42212
    P79114    		 34587504
    30562 6hr1:B (1.901) BS02 CA 2.7.11.18 GO:0000086 ... P07313
    P0DP23
    P42212
    P79114    		 34587504
    30563 6hr1:B (1.901) BS03 CA 2.7.11.18 GO:0000086 ... P07313
    P0DP23
    P42212
    P79114    		 34587504
    30564 6hr1:B (1.901) BS04 CA 2.7.11.18 GO:0000086 ... P07313
    P0DP23
    P42212
    P79114    		 34587504
    30565 6hr5:A (2.912) BS01 CA 3.1.6.-
    3.2.1.40    		 N/A T2KM26 31285597
    30566 6htv:A (3.9) BS02 CA 2.4.1.5 GO:0009250 ... A0A2H4A2Q1 31140266
    30567 6hu9:a (3.35) BS04 CA 7.1.1.9 GO:0004129 ... P00401 30598554
    30568 6hu9:m (3.35) BS04 CA 7.1.1.9 GO:0004129 ... P00401 30598554
    30569 6hun:A (1.802) BS01 CA 4.1.1.39 GO:0000287 ... A2BK54 31205016
    30570 6hv2:A (1.709) BS04 CA 3.4.24.- GO:0004222 ... P45452 30615822
    30571 6hv2:A (1.709) BS05 CA 3.4.24.- GO:0004222 ... P45452 30615822
    30572 6hv2:A (1.709) BS06 CA 3.4.24.- GO:0004222 ... P45452 30615822
    30573 6hvg:A (2.8) BS01 CA 2.4.1.5 GO:0009250 ... Q9RE05 N/A
    30574 6hvg:B (2.8) BS01 CA 2.4.1.5 GO:0009250 ... Q9RE05 N/A
    30575 6hw2:A (1.941) BS01 CA ? GO:0005245 ... D4A055 N/A
    30576 6hw2:B (1.941) BS01 CA ? GO:0005634 ... Q13185 N/A
    30577 6hx8:A (2.402) BS02 CA 3.6.5.- GO:0000226 ... P81947 30775645
    30578 6hx8:C (2.402) BS02 CA 3.6.5.- GO:0000226 ... P81947 30775645
    30579 6hxb:A (4.0) BS01 CA 7.2.2.10 GO:0000045 ... P11607 30777856
    30580 6hxb:A (4.0) BS02 CA 7.2.2.10 GO:0000045 ... P11607 30777856
    30581 6hxb:A (4.0) BS03 CA 7.2.2.10 GO:0000045 ... P11607 30777856
    30582 6hyj:A (1.929) BS02 CA 3.1.3.3 GO:0000287 ... P78330 31205021
    30583 6hyj:B (1.929) BS02 CA 3.1.3.3 GO:0000287 ... P78330 31205021
    30584 6hyy:B (1.566) BS01 CA 3.1.3.3 GO:0000287 ... P78330 31205021
    30585 6hza:A (1.9) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30586 6hza:A (1.9) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30587 6hza:A (1.9) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30588 6hzb:A (1.9) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30589 6hzb:A (1.9) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30590 6hzb:A (1.9) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30591 6hzc:A (1.9) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30592 6hzc:A (1.9) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30593 6hzc:A (1.9) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30594 6hzd:A (1.9) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30595 6hzd:A (1.9) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30596 6hzd:A (1.9) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    30597 6hzz:A (2.52) BS02 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    30598 6hzz:B (2.52) BS02 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    30599 6i01:A (2.1) BS07 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    30600 6i01:B (2.1) BS06 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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