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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30001 6epy:B (2.04) BS05 CA N/A N/A N/A 29602905
    30002 6epy:B (2.04) BS06 CA N/A N/A N/A 29602905
    30003 6epy:B (2.04) BS07 CA N/A N/A N/A 29602905
    30004 6epy:B (2.04) BS08 CA N/A N/A N/A 29602905
    30005 6epy:B (2.04) BS09 CA N/A N/A N/A 29602905
    30006 6epy:B (2.04) BS10 CA N/A N/A N/A 29602905
    30007 6epy:B (2.04) BS11 CA N/A N/A N/A 29602905
    30008 6epy:B (2.04) BS12 CA N/A N/A N/A 29602905
    30009 6epy:B (2.04) BS13 CA N/A N/A N/A 29602905
    30010 6epy:B (2.04) BS14 CA N/A N/A N/A 29602905
    30011 6epy:B (2.04) BS15 CA N/A N/A N/A 29602905
    30012 6epy:B (2.04) BS16 CA N/A N/A N/A 29602905
    30013 6epy:B (2.04) BS17 CA N/A N/A N/A 29602905
    30014 6epy:B (2.04) BS18 CA N/A N/A N/A 29602905
    30015 6epy:B (2.04) BS19 CA N/A N/A N/A 29602905
    30016 6epy:B (2.04) BS20 CA N/A N/A N/A 29602905
    30017 6epy:B (2.04) BS21 CA N/A N/A N/A 29602905
    30018 6epy:B (2.04) BS22 CA N/A N/A N/A 29602905
    30019 6epy:B (2.04) BS23 CA N/A N/A N/A 29602905
    30020 6epy:B (2.04) BS24 CA N/A N/A N/A 29602905
    30021 6epy:B (2.04) BS25 CA N/A N/A N/A 29602905
    30022 6epy:B (2.04) BS26 CA N/A N/A N/A 29602905
    30023 6epy:B (2.04) BS27 CA N/A N/A N/A 29602905
    30024 6epy:B (2.04) BS28 CA N/A N/A N/A 29602905
    30025 6epy:B (2.04) BS29 CA N/A N/A N/A 29602905
    30026 6epy:B (2.04) BS30 CA N/A N/A N/A 29602905
    30027 6epy:B (2.04) BS31 CA N/A N/A N/A 29602905
    30028 6epy:B (2.04) BS32 CA N/A N/A N/A 29602905
    30029 6epy:B (2.04) BS33 CA N/A N/A N/A 29602905
    30030 6epy:B (2.04) BS34 CA N/A N/A N/A 29602905
    30031 6epy:B (2.04) BS35 CA N/A N/A N/A 29602905
    30032 6epy:B (2.04) BS36 CA N/A N/A N/A 29602905
    30033 6epy:C (2.04) BS04 CA N/A N/A N/A 29602905
    30034 6epy:C (2.04) BS05 CA N/A N/A N/A 29602905
    30035 6epy:C (2.04) BS06 CA N/A N/A N/A 29602905
    30036 6epy:C (2.04) BS07 CA N/A N/A N/A 29602905
    30037 6epy:C (2.04) BS08 CA N/A N/A N/A 29602905
    30038 6epy:C (2.04) BS09 CA N/A N/A N/A 29602905
    30039 6epy:C (2.04) BS10 CA N/A N/A N/A 29602905
    30040 6epy:C (2.04) BS11 CA N/A N/A N/A 29602905
    30041 6epy:C (2.04) BS12 CA N/A N/A N/A 29602905
    30042 6epy:C (2.04) BS13 CA N/A N/A N/A 29602905
    30043 6epy:C (2.04) BS14 CA N/A N/A N/A 29602905
    30044 6epy:C (2.04) BS15 CA N/A N/A N/A 29602905
    30045 6epy:C (2.04) BS16 CA N/A N/A N/A 29602905
    30046 6epy:C (2.04) BS17 CA N/A N/A N/A 29602905
    30047 6epy:C (2.04) BS18 CA N/A N/A N/A 29602905
    30048 6epy:C (2.04) BS19 CA N/A N/A N/A 29602905
    30049 6epy:C (2.04) BS20 CA N/A N/A N/A 29602905
    30050 6epy:C (2.04) BS21 CA N/A N/A N/A 29602905
    30051 6epy:C (2.04) BS22 CA N/A N/A N/A 29602905
    30052 6epy:C (2.04) BS23 CA N/A N/A N/A 29602905
    30053 6epy:C (2.04) BS24 CA N/A N/A N/A 29602905
    30054 6epy:D (2.04) BS04 CA N/A N/A N/A 29602905
    30055 6epy:D (2.04) BS05 CA N/A N/A N/A 29602905
    30056 6epy:D (2.04) BS06 CA N/A N/A N/A 29602905
    30057 6epy:D (2.04) BS07 CA N/A N/A N/A 29602905
    30058 6epy:D (2.04) BS08 CA N/A N/A N/A 29602905
    30059 6epy:D (2.04) BS09 CA N/A N/A N/A 29602905
    30060 6epy:D (2.04) BS10 CA N/A N/A N/A 29602905
    30061 6epy:D (2.04) BS11 CA N/A N/A N/A 29602905
    30062 6epy:D (2.04) BS12 CA N/A N/A N/A 29602905
    30063 6eq0:A (2.45) BS02 CA N/A N/A N/A 29602905
    30064 6eq0:A (2.45) BS03 CA N/A N/A N/A 29602905
    30065 6eq0:A (2.45) BS04 CA N/A N/A N/A 29602905
    30066 6eq0:A (2.45) BS05 CA N/A N/A N/A 29602905
    30067 6eq0:A (2.45) BS06 CA N/A N/A N/A 29602905
    30068 6eq0:B (2.45) BS02 CA N/A N/A N/A 29602905
    30069 6eq0:B (2.45) BS03 CA N/A N/A N/A 29602905
    30070 6eq1:A (2.1) BS05 CA N/A N/A N/A 29602905
    30071 6eq1:B (2.1) BS05 CA N/A N/A N/A 29602905
    30072 6eq1:B (2.1) BS06 CA N/A N/A N/A 29602905
    30073 6eq8:A (2.19) BS02 CA N/A N/A N/A 29602905
    30074 6eq8:A (2.19) BS03 CA N/A N/A N/A 29602905
    30075 6eq8:A (2.19) BS04 CA N/A N/A N/A 29602905
    30076 6eq8:A (2.19) BS05 CA N/A N/A N/A 29602905
    30077 6eq8:B (2.19) BS02 CA N/A N/A N/A 29602905
    30078 6eq8:B (2.19) BS03 CA N/A N/A N/A 29602905
    30079 6eq8:C (2.19) BS02 CA N/A N/A N/A 29602905
    30080 6eq8:C (2.19) BS03 CA N/A N/A N/A 29602905
    30081 6eq8:C (2.19) BS04 CA N/A N/A N/A 29602905
    30082 6eq8:D (2.19) BS02 CA N/A N/A N/A 29602905
    30083 6eqv:A (1.895) BS02 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30084 6eqv:A (1.895) BS03 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30085 6eqv:A (1.895) BS04 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30086 6eqw:A (1.994) BS02 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30087 6eqw:A (1.994) BS03 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30088 6eqw:A (1.994) BS04 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30089 6eqx:A (1.994) BS02 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30090 6eqx:A (1.994) BS03 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30091 6eqx:A (1.994) BS04 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    30092 6erc:A (2.50002) BS02 CA 1.11.1.7 GO:0004601 ... Q6TMK4 29242189
    30093 6erc:B (2.50002) BS01 CA 1.11.1.7 GO:0004601 ... Q6TMK4 29242189
    30094 6esb:1 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    30095 6esb:2 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    30096 6esb:3 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    30097 6esb:4 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    30098 6esb:5 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    30099 6esb:6 (3.4) BS03 CA ? GO:0005198 ... P03088 29706532
    30100 6esm:A (1.104) BS03 CA 3.4.24.35 GO:0004222 ... P14780 29727184
    30101 6esm:A (1.104) BS04 CA 3.4.24.35 GO:0004222 ... P14780 29727184
    30102 6esm:A (1.104) BS05 CA 3.4.24.35 GO:0004222 ... P14780 29727184
    30103 6est:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 2354062
    30104 6ety:A (1.68) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    30105 6euh:A (2.0) BS02 CA ? GO:0004553 ... Q8A1H8 30349080
    30106 6euh:B (2.0) BS02 CA ? GO:0004553 ... Q8A1H8 30349080
    30107 6euh:C (2.0) BS01 CA ? GO:0004553 ... Q8A1H8 30349080
    30108 6eui:A (1.76) BS03 CA ? GO:0004553 ... Q8A1H8 30349080
    30109 6ew9:A (2.2) BS02 CA 3.4.21.107 GO:0004252 ... P0AEE3 29658704
    30110 6ew9:B (2.2) BS02 CA 3.4.21.107 GO:0004252 ... P0AEE3 29658704
    30111 6ew9:C (2.2) BS02 CA 3.4.21.107 GO:0004252 ... P0AEE3 29658704
    30112 6eyi:A (2.04) BS02 CA ? GO:0007155 ... P16581 N/A
    30113 6eyj:A (2.2) BS02 CA ? GO:0007155 ... P16581 N/A
    30114 6eyj:B (2.2) BS02 CA ? GO:0007155 ... P16581 N/A
    30115 6eyk:A (2.21) BS02 CA ? GO:0007155 ... P16581 N/A
    30116 6ez9:A (1.61) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    30117 6ezz:A (1.8) BS02 CA 1.4.3.21 GO:0005507 ... P46883 30110143
    30118 6ezz:B (1.8) BS02 CA 1.4.3.21 GO:0005507 ... P46883 30110143
    30119 6f1c:A (4.2) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30120 6f1c:A (4.2) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30121 6f1c:A (4.2) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30122 6f1c:B (4.2) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30123 6f1c:B (4.2) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30124 6f1c:B (4.2) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30125 6f1c:C (4.2) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30126 6f1c:C (4.2) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30127 6f1c:C (4.2) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30128 6f1c:D (4.2) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30129 6f1c:D (4.2) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30130 6f1c:D (4.2) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30131 6f1d:A (1.95) BS01 CA 3.4.21.41 N/A P00736 29311313
    30132 6f1h:A (4.5) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30133 6f1h:A (4.5) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30134 6f1h:A (4.5) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30135 6f1h:B (4.5) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30136 6f1h:B (4.5) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30137 6f1h:B (4.5) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30138 6f1h:C (4.5) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30139 6f1h:C (4.5) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30140 6f1h:C (4.5) BS04 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30141 6f1h:D (4.5) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30142 6f1h:D (4.5) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    30143 6f2p:A (2.6) BS01 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    30144 6f2p:A (2.6) BS02 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    30145 6f2p:A (2.6) BS03 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    30146 6f2p:A (2.6) BS04 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    30147 6f2p:A (2.6) BS05 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    30148 6f2p:A (2.6) BS06 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    30149 6f2p:A (2.6) BS07 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    30150 6f2t:A (2.4) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30151 6f2t:B (2.4) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30152 6f2v:A (2.5) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30153 6f2v:B (2.5) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30154 6f2y:A (2.4) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30155 6f2y:B (2.4) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30156 6f30:A (2.3) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30157 6f30:B (2.3) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30158 6f32:A (2.8) BS03 CA ? GO:0000166 ... Q83X90 30266997
    30159 6f32:B (2.8) BS02 CA ? GO:0000166 ... Q83X90 30266997
    30160 6f33:A (3.0) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30161 6f33:B (3.0) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    30162 6f39:A (5.801) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30163 6f39:A (5.801) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30164 6f39:A (5.801) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30165 6f39:B (5.801) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30166 6f39:B (5.801) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30167 6f39:B (5.801) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    30168 6f5l:A (1.63) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    30169 6f6q:A (1.79) BS02 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30170 6f6q:A (1.79) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30171 6f6q:A (1.79) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30172 6f6q:A (1.79) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30173 6f6q:A (1.79) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30174 6f75:A (1.89) BS02 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30175 6f75:A (1.89) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30176 6f75:A (1.89) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30177 6f75:A (1.89) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30178 6f79:A (1.9) BS02 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30179 6f79:A (1.9) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30180 6f79:A (1.9) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30181 6f79:A (1.9) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30182 6f79:A (1.9) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    30183 6f7c:A (2.002) BS02 CA 3.6.5.- GO:0000226 ... P81947 31655259
    30184 6f7c:C (2.002) BS02 CA 3.6.5.- GO:0000226 ... P81947 31655259
    30185 6f7l:B (2.5) BS02 CA ? GO:0000166 ... Q83X90 30266997
    30186 6f8b:A (1.3) BS01 CA 3.4.24.26 GO:0004222 ... P14756 29485268
    30187 6f8z:A (2.5) BS01 CA ? GO:0005975 ... Q8A325 29717710
    30188 6f8z:B (2.5) BS01 CA ? GO:0005975 ... Q8A325 29717710
    30189 6f8z:C (2.5) BS01 CA ? GO:0005975 ... Q8A325 29717710
    30190 6f90:A (2.4) BS01 CA ? GO:0005975 ... Q8A325 29717710
    30191 6f90:B (2.4) BS01 CA ? GO:0005975 ... Q8A325 29717710
    30192 6f90:C (2.4) BS01 CA ? GO:0005975 ... Q8A325 29717710
    30193 6f91:A (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    30194 6f91:B (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    30195 6f91:C (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    30196 6f91:D (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    30197 6f91:E (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    30198 6f91:F (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    30199 6f91:G (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    30200 6f91:H (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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