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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29801 6e2g:E (3.6) BS03 CA ? GO:0000086 ... P0DP23 30116787
    29802 6e2g:E (3.6) BS04 CA ? GO:0000086 ... P0DP23 30116787
    29803 6e3f:A (2.7) BS01 CA ? N/A Q9KW51 34339301
    29804 6e3f:A (2.7) BS02 CA ? N/A Q9KW51 34339301
    29805 6e48:A (1.801) BS02 CA ? N/A Q80J94 30194229
    29806 6e48:A (1.801) BS03 CA ? N/A Q80J94 30194229
    29807 6e48:A (1.801) BS04 CA ? N/A Q80J94 30194229
    29808 6e48:B (1.801) BS03 CA ? N/A Q80J94 30194229
    29809 6e48:B (1.801) BS04 CA ? N/A Q80J94 30194229
    29810 6e48:B (1.801) BS05 CA ? N/A Q80J94 30194229
    29811 6e48:F (1.801) BS01 CA ? N/A Q6SJQ7 30194229
    29812 6e48:G (1.801) BS01 CA ? N/A Q6SJQ7 30194229
    29813 6e58:A (2.75) BS01 CA 3.2.1.96 GO:0004553 ... T1WGN1 30937380
    29814 6e58:B (2.75) BS01 CA 3.2.1.96 GO:0004553 ... T1WGN1 30937380
    29815 6e5m:A (1.612) BS02 CA 3.4.21.4 GO:0004175 ... P00760 30817908
    29816 6e5x:A (1.5) BS02 CA ? GO:0003723 ... Q77DJ5 30550789
    29817 6e6b:A (4.52) BS01 CA ? GO:0005509 ... Q91XX6 30971825
    29818 6e6b:A (4.52) BS02 CA ? GO:0005509 ... Q91XX6 30971825
    29819 6e6b:A (4.52) BS03 CA ? GO:0005509 ... Q91XX6 30971825
    29820 6e6b:A (4.52) BS04 CA ? GO:0005509 ... Q91XX6 30971825
    29821 6e6b:A (4.52) BS05 CA ? GO:0005509 ... Q91XX6 30971825
    29822 6e6b:A (4.52) BS06 CA ? GO:0005509 ... Q91XX6 30971825
    29823 6e6b:A (4.52) BS07 CA ? GO:0005509 ... Q91XX6 30971825
    29824 6e6b:A (4.52) BS08 CA ? GO:0005509 ... Q91XX6 30971825
    29825 6e6b:A (4.52) BS09 CA ? GO:0005509 ... Q91XX6 30971825
    29826 6e6b:A (4.52) BS10 CA ? GO:0005509 ... Q91XX6 30971825
    29827 6e6b:A (4.52) BS11 CA ? GO:0005509 ... Q91XX6 30971825
    29828 6e6b:A (4.52) BS12 CA ? GO:0005509 ... Q91XX6 30971825
    29829 6e6b:A (4.52) BS13 CA ? GO:0005509 ... Q91XX6 30971825
    29830 6e6b:A (4.52) BS14 CA ? GO:0005509 ... Q91XX6 30971825
    29831 6e6b:A (4.52) BS15 CA ? GO:0005509 ... Q91XX6 30971825
    29832 6e6b:B (4.52) BS01 CA ? GO:0005509 ... Q91XX6 30971825
    29833 6e6b:B (4.52) BS02 CA ? GO:0005509 ... Q91XX6 30971825
    29834 6e6b:B (4.52) BS03 CA ? GO:0005509 ... Q91XX6 30971825
    29835 6e6b:B (4.52) BS04 CA ? GO:0005509 ... Q91XX6 30971825
    29836 6e6b:B (4.52) BS05 CA ? GO:0005509 ... Q91XX6 30971825
    29837 6e6b:B (4.52) BS06 CA ? GO:0005509 ... Q91XX6 30971825
    29838 6e6b:B (4.52) BS07 CA ? GO:0005509 ... Q91XX6 30971825
    29839 6e6b:B (4.52) BS08 CA ? GO:0005509 ... Q91XX6 30971825
    29840 6e6b:B (4.52) BS09 CA ? GO:0005509 ... Q91XX6 30971825
    29841 6e6b:B (4.52) BS10 CA ? GO:0005509 ... Q91XX6 30971825
    29842 6e6b:B (4.52) BS11 CA ? GO:0005509 ... Q91XX6 30971825
    29843 6e6b:B (4.52) BS12 CA ? GO:0005509 ... Q91XX6 30971825
    29844 6e6b:B (4.52) BS13 CA ? GO:0005509 ... Q91XX6 30971825
    29845 6e6b:B (4.52) BS14 CA ? GO:0005509 ... Q91XX6 30971825
    29846 6e6b:B (4.52) BS15 CA ? GO:0005509 ... Q91XX6 30971825
    29847 6e6c:A (1.9) BS02 CA 3.6.5.2 GO:0003924 ... P01112 31390567
    29848 6e6g:A (1.93) BS02 CA 3.6.5.2 GO:0003924 ... P01116 31390567
    29849 6e6p:C (1.93) BS03 CA 3.6.5.2 GO:0003924 ... P01112 31390567
    29850 6e70:A (1.992) BS02 CA ? GO:0005179 ... P02766 N/A
    29851 6e70:B (1.992) BS02 CA ? GO:0005179 ... P02766 N/A
    29852 6e7k:A (2.8) BS02 CA 3.1.1.32
    3.1.1.34    		 GO:0004465 ... P06858 30559189
    29853 6e7k:B (2.8) BS01 CA 3.1.1.32
    3.1.1.34    		 GO:0004465 ... P06858 30559189
    29854 6e8f:A (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    29855 6e8f:A (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    29856 6e8f:A (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    29857 6e8f:A (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    29858 6e8f:B (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    29859 6e8f:B (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    29860 6e8f:B (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    29861 6e8f:B (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    29862 6e8f:B (2.99) BS05 CA ? GO:0005509 ... Q96QU1 32963095
    29863 6e8f:C (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    29864 6e8f:C (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    29865 6e8f:C (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    29866 6e8f:C (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    29867 6e90:A (2.05) BS02 CA 1.1.1.8 GO:0004368 ... P21695 30640445
    29868 6e90:B (2.05) BS02 CA 1.1.1.8 GO:0004368 ... P21695 30640445
    29869 6eac:A (2.269) BS02 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    29870 6eac:A (2.269) BS03 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    29871 6eac:B (2.269) BS02 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    29872 6eac:B (2.269) BS03 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    29873 6eac:C (2.269) BS02 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    29874 6eac:D (2.269) BS02 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    29875 6eat:A (1.149) BS02 CA 3.4.21.4 GO:0004175 ... P00760 30817908
    29876 6eau:A (1.18) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    29877 6eav:A (1.391) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    29878 6eaw:A (1.289) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    29879 6eax:A (1.189) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    29880 6eb5:A (2.6) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    29881 6eb5:A (2.6) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    29882 6eb5:A (2.6) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    29883 6eb5:B (2.6) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    29884 6eb5:B (2.6) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    29885 6eb5:B (2.6) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    29886 6ebo:A (1.58) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29887 6ebo:B (1.58) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29888 6ebo:C (1.58) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29889 6ebo:D (1.58) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29890 6ebp:A (1.59) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29891 6ebp:B (1.59) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29892 6ebp:C (1.59) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29893 6ebp:D (1.59) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29894 6ebz:A (1.66) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29895 6ebz:B (1.66) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29896 6ebz:C (1.66) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29897 6ebz:D (1.66) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    29898 6eeb:A (1.96) BS02 CA ? GO:0000086 ... P0DP23 31337679
    29899 6eeb:A (1.96) BS03 CA ? GO:0000086 ... P0DP23 31337679
    29900 6eeb:A (1.96) BS04 CA ? GO:0000086 ... P0DP23 31337679
    29901 6eeb:A (1.96) BS05 CA ? GO:0000086 ... P0DP23 31337679
    29902 6eeg:A (1.95) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    29903 6eet:A (3.23) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    29904 6eet:A (3.23) BS05 CA ? GO:0005509 ... Q99PJ1 32963095
    29905 6eet:A (3.23) BS06 CA ? GO:0005509 ... Q99PJ1 32963095
    29906 6eet:A (3.23) BS07 CA ? GO:0005509 ... Q99PJ1 32963095
    29907 6ef7:A (1.03) BS01 CA ? N/A Q939N5 35585145
    29908 6efa:A (1.6) BS01 CA ? N/A Q939N5 35585145
    29909 6efb:A (1.9) BS01 CA N/A N/A N/A 35585145
    29910 6efc:A (1.4) BS01 CA ? N/A A8AWU7 35585145
    29911 6eff:A (1.6) BS01 CA N/A N/A N/A 35585145
    29912 6eff:A (1.6) BS02 CA N/A N/A N/A 35585145
    29913 6eff:B (1.6) BS01 CA N/A N/A N/A 35585145
    29914 6eff:B (1.6) BS02 CA N/A N/A N/A 35585145
    29915 6eff:C (1.6) BS01 CA N/A N/A N/A 35585145
    29916 6eff:C (1.6) BS02 CA N/A N/A N/A 35585145
    29917 6eff:D (1.6) BS01 CA N/A N/A N/A 35585145
    29918 6eff:D (1.6) BS02 CA N/A N/A N/A 35585145
    29919 6efi:A (1.715) BS01 CA ? N/A F0FS71 35585145
    29920 6efi:B (1.715) BS01 CA ? N/A F0FS71 35585145
    29921 6eg5:A (2.45) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    29922 6eg5:C (2.45) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    29923 6ehf:A (2.72) BS01 CA ? GO:0006811 ... A0A0H3AME7 29657131
    29924 6ekn:A (1.2) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29925 6ekn:A (1.2) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29926 6ekn:A (1.2) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29927 6eko:A (2.284) BS03 CA 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    29928 6eko:A (2.284) BS04 CA 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    29929 6eko:B (2.284) BS03 CA 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    29930 6eks:A (1.87) BS01 CA 3.2.1.18 GO:0004308 ... P0C6E9 29149072
    29931 6eks:A (1.87) BS02 CA 3.2.1.18 GO:0004308 ... P0C6E9 29149072
    29932 6eks:A (1.87) BS03 CA 3.2.1.18 GO:0004308 ... P0C6E9 29149072
    29933 6eku:A (1.75) BS02 CA 3.2.1.18 GO:0004308 ... P0C6E9 29149072
    29934 6ela:A (1.485) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29935 6ela:A (1.485) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29936 6ela:A (1.485) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29937 6ela:B (1.485) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29938 6ela:B (1.485) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29939 6ela:B (1.485) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29940 6ela:C (1.485) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29941 6ela:C (1.485) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29942 6ela:C (1.485) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29943 6ela:D (1.485) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29944 6ela:D (1.485) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29945 6ela:D (1.485) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29946 6elt:A (1.35) BS01 CA 1.10.3.1 GO:0004097 ... P43309 30825403
    29947 6elv:A (1.05) BS01 CA 1.10.3.1 GO:0004097 ... P43309 30825403
    29948 6en3:A (2.903) BS04 CA 2.3.1.-
    3.4.22.-
    6.3.2.-    		 N/A Q9KS12 29760474
    29949 6enm:A (1.59) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29950 6enm:A (1.59) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29951 6enm:A (1.59) BS06 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29952 6enm:B (1.59) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29953 6enm:B (1.59) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29954 6enm:B (1.59) BS06 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29955 6eon:A (1.75) BS02 CA ? GO:0004553 ... Q8AB22 30349080
    29956 6eop:A (2.4) BS02 CA 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    29957 6eop:B (2.4) BS02 CA 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    29958 6eop:C (2.4) BS02 CA 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    29959 6eox:A (1.3) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29960 6eox:A (1.3) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29961 6eox:A (1.3) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    29962 6ep0:A (2.35) BS02 CA N/A N/A N/A 30850593
    29963 6epa:A (1.82) BS01 CA ? GO:0005509 ... Q9VWX8 29966094
    29964 6epa:A (1.82) BS02 CA ? GO:0005509 ... Q9VWX8 29966094
    29965 6epa:A (1.82) BS03 CA ? GO:0005509 ... Q9VWX8 29966094
    29966 6epy:A (2.04) BS04 CA N/A N/A N/A 29602905
    29967 6epy:A (2.04) BS05 CA N/A N/A N/A 29602905
    29968 6epy:A (2.04) BS06 CA N/A N/A N/A 29602905
    29969 6epy:A (2.04) BS07 CA N/A N/A N/A 29602905
    29970 6epy:A (2.04) BS08 CA N/A N/A N/A 29602905
    29971 6epy:A (2.04) BS09 CA N/A N/A N/A 29602905
    29972 6epy:A (2.04) BS10 CA N/A N/A N/A 29602905
    29973 6epy:A (2.04) BS11 CA N/A N/A N/A 29602905
    29974 6epy:A (2.04) BS12 CA N/A N/A N/A 29602905
    29975 6epy:A (2.04) BS13 CA N/A N/A N/A 29602905
    29976 6epy:A (2.04) BS14 CA N/A N/A N/A 29602905
    29977 6epy:A (2.04) BS15 CA N/A N/A N/A 29602905
    29978 6epy:A (2.04) BS16 CA N/A N/A N/A 29602905
    29979 6epy:A (2.04) BS17 CA N/A N/A N/A 29602905
    29980 6epy:A (2.04) BS18 CA N/A N/A N/A 29602905
    29981 6epy:A (2.04) BS19 CA N/A N/A N/A 29602905
    29982 6epy:A (2.04) BS20 CA N/A N/A N/A 29602905
    29983 6epy:A (2.04) BS21 CA N/A N/A N/A 29602905
    29984 6epy:A (2.04) BS22 CA N/A N/A N/A 29602905
    29985 6epy:A (2.04) BS23 CA N/A N/A N/A 29602905
    29986 6epy:A (2.04) BS24 CA N/A N/A N/A 29602905
    29987 6epy:A (2.04) BS25 CA N/A N/A N/A 29602905
    29988 6epy:A (2.04) BS26 CA N/A N/A N/A 29602905
    29989 6epy:A (2.04) BS27 CA N/A N/A N/A 29602905
    29990 6epy:A (2.04) BS28 CA N/A N/A N/A 29602905
    29991 6epy:A (2.04) BS29 CA N/A N/A N/A 29602905
    29992 6epy:A (2.04) BS30 CA N/A N/A N/A 29602905
    29993 6epy:A (2.04) BS31 CA N/A N/A N/A 29602905
    29994 6epy:A (2.04) BS32 CA N/A N/A N/A 29602905
    29995 6epy:A (2.04) BS33 CA N/A N/A N/A 29602905
    29996 6epy:A (2.04) BS34 CA N/A N/A N/A 29602905
    29997 6epy:A (2.04) BS35 CA N/A N/A N/A 29602905
    29998 6epy:A (2.04) BS36 CA N/A N/A N/A 29602905
    29999 6epy:A (2.04) BS37 CA N/A N/A N/A 29602905
    30000 6epy:B (2.04) BS04 CA N/A N/A N/A 29602905
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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