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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29401 6bz3:C (2.497) BS03 CA 2.7.10.2 GO:0004713 ... P34152 29479476
    29402 6bzn:D (1.8) BS01 CA 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    29403 6c01:A (2.3) BS04 CA 3.1.4.1
    3.6.1.9
    GO:0002276 ... O14638 29717535
    29404 6c01:B (2.3) BS04 CA 3.1.4.1
    3.6.1.9
    GO:0002276 ... O14638 29717535
    29405 6c02:A (1.942) BS04 CA 3.1.4.1
    3.6.1.9
    GO:0002276 ... O14638 29717535
    29406 6c02:B (1.942) BS03 CA 3.1.4.1
    3.6.1.9
    GO:0002276 ... O14638 29717535
    29407 6c0m:A (1.83) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 29693380
    29408 6c0m:B (1.83) BS02 CA 3.2.1.18 GO:0004308 ... G8G134 29693380
    29409 6c2h:A (1.49) BS02 CA 4.2.1.22 GO:0004122 ... P32582 29630349
    29410 6c2q:A (2.17) BS02 CA 4.2.1.22 GO:0004122 ... P32582 29630349
    29411 6c2z:A (1.37) BS02 CA 4.2.1.22 GO:0004122 ... P32582 29630349
    29412 6c46:A (1.95) BS01 CA 5.1.3.13 GO:0005829 ... A0A077ENB9 N/A
    29413 6c46:D (1.95) BS01 CA 5.1.3.13 GO:0005829 ... A0A077ENB9 N/A
    29414 6c4p:A (2.3) BS02 CA 4.2.1.22 GO:0004122 ... P32582 29630349
    29415 6c6g:A (2.1) BS01 CA 3.5.1.131 GO:0003824 ... Q936X3 29523689
    29416 6c6g:B (2.1) BS01 CA 3.5.1.131 GO:0003824 ... Q936X3 29523689
    29417 6c74:A (1.358) BS02 CA ? N/A Q6SJQ7 30194229
    29418 6cac:A (1.79) BS03 CA 3.5.2.6 N/A C7C422 30348667
    29419 6cac:B (1.79) BS03 CA 3.5.2.6 N/A C7C422 30348667
    29420 6cac:C (1.79) BS03 CA 3.5.2.6 N/A C7C422 30348667
    29421 6cac:D (1.79) BS03 CA 3.5.2.6 N/A C7C422 30348667
    29422 6cam:A (1.75) BS01 CA ? N/A Q8DTF1 29685986
    29423 6cg0:A (3.17) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    29424 6cg0:C (3.17) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    29425 6cg6:A (2.707) BS01 CA ? GO:0005509 ... P70408 29742438
    29426 6cg6:A (2.707) BS02 CA ? GO:0005509 ... P70408 29742438
    29427 6cg6:A (2.707) BS03 CA ? GO:0005509 ... P70408 29742438
    29428 6cg7:A (2.705) BS01 CA ? GO:0005509 ... Q9WTP5 29742438
    29429 6cg7:A (2.705) BS02 CA ? GO:0005509 ... Q9WTP5 29742438
    29430 6cg7:A (2.705) BS03 CA ? GO:0005509 ... Q9WTP5 29742438
    29431 6cg7:B (2.705) BS01 CA ? GO:0005509 ... Q9WTP5 29742438
    29432 6cg7:B (2.705) BS02 CA ? GO:0005509 ... Q9WTP5 29742438
    29433 6cg7:B (2.705) BS03 CA ? GO:0005509 ... Q9WTP5 29742438
    29434 6cgb:A (2.994) BS01 CA ? GO:0005509 ... P55288
    P97326
    29742438
    29435 6cgb:A (2.994) BS02 CA ? GO:0005509 ... P55288
    P97326
    29742438
    29436 6cgb:A (2.994) BS03 CA ? GO:0005509 ... P55288
    P97326
    29742438
    29437 6cgs:A (1.72) BS01 CA ? GO:0005509 ... Q8BM92 29742438
    29438 6cgs:A (1.72) BS02 CA ? GO:0005509 ... Q8BM92 29742438
    29439 6cgs:A (1.72) BS03 CA ? GO:0005509 ... Q8BM92 29742438
    29440 6cgs:B (1.72) BS01 CA ? GO:0005509 ... Q8BM92 29742438
    29441 6cgs:B (1.72) BS02 CA ? GO:0005509 ... Q8BM92 29742438
    29442 6cgs:B (1.72) BS03 CA ? GO:0005509 ... Q8BM92 29742438
    29443 6cgt:A (2.6) BS06 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    29444 6cgt:A (2.6) BS07 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    29445 6cgu:A (1.9) BS01 CA ? GO:0005509 ... P97326 29742438
    29446 6cgu:A (1.9) BS02 CA ? GO:0005509 ... P97326 29742438
    29447 6cgu:A (1.9) BS03 CA ? GO:0005509 ... P97326 29742438
    29448 6cgu:B (1.9) BS01 CA ? GO:0005509 ... P97326 29742438
    29449 6cgu:B (1.9) BS02 CA ? GO:0005509 ... P97326 29742438
    29450 6cgu:B (1.9) BS03 CA ? GO:0005509 ... P97326 29742438
    29451 6cgu:C (1.9) BS01 CA ? GO:0005509 ... P97326 29742438
    29452 6cgu:C (1.9) BS02 CA ? GO:0005509 ... P97326 29742438
    29453 6cgu:C (1.9) BS03 CA ? GO:0005509 ... P97326 29742438
    29454 6cgu:C (1.9) BS04 CA ? GO:0005509 ... P97326 29742438
    29455 6cgu:D (1.9) BS01 CA ? GO:0005509 ... P97326 29742438
    29456 6cgu:D (1.9) BS02 CA ? GO:0005509 ... P97326 29742438
    29457 6cgu:D (1.9) BS03 CA ? GO:0005509 ... P97326 29742438
    29458 6cgu:D (1.9) BS04 CA ? GO:0005509 ... P97326 29742438
    29459 6ci0:A (2.4) BS08 CA 7.1.1.9 GO:0004129 ... P33517 29626419
    29460 6ci0:C (2.4) BS02 CA 7.1.1.9 GO:0004129 ... P33517 29626419
    29461 6cij:A (3.9) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    29462 6cij:C (3.9) BS07 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... P15919 29628308
    29463 6cj9:A (1.7) BS01 CA ? GO:0030246 ... C0HK27 29559315
    29464 6ckb:B (2.8) BS01 CA ? N/A P05106
    P20701
    30018079
    29465 6cl6:A (1.898) BS02 CA ? N/A G3XD71 30110933
    29466 6cl6:B (1.898) BS02 CA ? N/A G3XD71 30110933
    29467 6cl6:C (1.898) BS02 CA ? N/A G3XD71 30110933
    29468 6cl6:D (1.898) BS02 CA ? N/A G3XD71 30110933
    29469 6cl6:E (1.898) BS02 CA ? N/A G3XD71 30110933
    29470 6cl6:F (1.898) BS02 CA ? N/A G3XD71 30110933
    29471 6cn2:A (3.102) BS02 CA 2.7.1.68 GO:0046488 ... Q503I3 29959184
    29472 6cnn:E (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    29473 6cnn:E (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    29474 6cnn:E (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    29475 6cnn:F (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    29476 6cnn:F (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    29477 6cnn:F (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    29478 6cnn:G (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    29479 6cnn:G (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    29480 6cnn:G (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    29481 6cnn:H (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    29482 6cnn:H (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    29483 6cnn:H (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    29484 6cno:E (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    29485 6cno:E (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    29486 6cno:E (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    29487 6cno:F (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    29488 6cno:F (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    29489 6cno:F (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    29490 6cno:G (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    29491 6cno:G (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    29492 6cno:G (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    29493 6cno:H (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    29494 6cno:H (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    29495 6cno:H (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    29496 6cnp:A (2.1) BS03 CA ? GO:0003677 ... Q9UBB5 29567833
    29497 6co7:A (3.07) BS02 CA ? GO:0005216 ... A7T1N0 29745897
    29498 6co7:B (3.07) BS02 CA ? GO:0005216 ... A7T1N0 29745897
    29499 6co7:C (3.07) BS02 CA ? GO:0005216 ... A7T1N0 29745897
    29500 6co7:D (3.07) BS02 CA ? GO:0005216 ... A7T1N0 29745897
    29501 6com:A (2.3) BS03 CA 4.1.1.49 GO:0000287 ... P22259 31911238
    29502 6cpm:C (2.011) BS01 CA 3.4.19.12 GO:0004843 ... Q9Y4E8 30713027
    29503 6cpm:C (2.011) BS02 CA 3.4.19.12 GO:0004843 ... Q9Y4E8 30713027
    29504 6cpm:D (2.011) BS01 CA 3.4.19.12 GO:0004843 ... Q9Y4E8 30713027
    29505 6cpm:E (2.011) BS01 CA N/A N/A N/A 30713027
    29506 6cr0:A (1.548) BS01 CA 1.5.3.5 GO:0000166 ... A0A075BSX9 N/A
    29507 6cv7:A (1.692) BS01 CA ? GO:0005509 ... Q99PJ1 30057206
    29508 6cv7:A (1.692) BS02 CA ? GO:0005509 ... Q99PJ1 30057206
    29509 6cv7:A (1.692) BS03 CA ? GO:0005509 ... Q99PJ1 30057206
    29510 6cv7:A (1.692) BS04 CA ? GO:0005509 ... Q99PJ1 30057206
    29511 6cv7:A (1.692) BS05 CA ? GO:0005509 ... Q99PJ1 30057206
    29512 6cwj:A (2.253) BS01 CA 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    29513 6cwj:B (2.253) BS02 CA 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    29514 6cwj:C (2.253) BS02 CA 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    29515 6cwj:D (2.253) BS02 CA 3.5.2.15 GO:0016787 ... Q2RGM7 31181074
    29516 6cx0:A (3.501) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    29517 6cx0:A (3.501) BS02 CA ? GO:0000325 ... Q94KI8 30190435
    29518 6cx0:A (3.501) BS03 CA ? GO:0000325 ... Q94KI8 30190435
    29519 6cx0:A (3.501) BS04 CA ? GO:0000325 ... Q94KI8 30190435
    29520 6cxo:A (2.2) BS01 CA ? GO:0001906 ... P06683 30111885
    29521 6cxo:B (2.2) BS01 CA ? GO:0001906 ... P06683 30111885
    29522 6cxy:C (2.2) BS01 CA ? GO:0005509 ... P12830 N/A
    29523 6cxy:C (2.2) BS02 CA ? GO:0005509 ... P12830 N/A
    29524 6cxy:C (2.2) BS03 CA ? GO:0005509 ... P12830 N/A
    29525 6czq:R (2.2) BS01 CA ? GO:0000086 ... P0DP29 30013223
    29526 6czq:R (2.2) BS02 CA ? GO:0000086 ... P0DP29 30013223
    29527 6d03:A (3.68) BS01 CA ? GO:0004998 ... P02786 29950717
    29528 6d03:B (3.68) BS01 CA ? GO:0004998 ... P02786 29950717
    29529 6d04:A (3.74) BS01 CA ? GO:0004998 ... P02786 29950717
    29530 6d04:B (3.74) BS01 CA ? GO:0004998 ... P02786 29950717
    29531 6d05:A (3.8) BS01 CA ? GO:0004998 ... P02786 29950717
    29532 6d05:B (3.8) BS01 CA ? GO:0004998 ... P02786 29950717
    29533 6d14:A (2.5) BS02 CA ? GO:0005524 ... A8WFV1 29991590
    29534 6d14:B (2.5) BS02 CA ? GO:0005524 ... A8WFV1 29991590
    29535 6d2c:A (1.906) BS01 CA 4.2.2.- N/A A0A084JZF2 29875159
    29536 6d2c:B (1.906) BS01 CA 4.2.2.- N/A A0A084JZF2 29875159
    29537 6d2s:A (1.819) BS01 CA ? N/A O06581 31504787
    29538 6d2s:A (1.819) BS02 CA ? N/A O06581 31504787
    29539 6d3b:A (1.4) BS01 CA 3.2.1.18 GO:0004308 ... P03472 30713159
    29540 6d3u:A (2.21) BS03 CA 4.2.2.- N/A A0A084JZF2 29875159
    29541 6d3u:B (2.21) BS04 CA 4.2.2.- N/A A0A084JZF2 29875159
    29542 6d3w:A (1.9) BS01 CA ? GO:0046872 ... A0A1S1GKD7 29688811
    29543 6d3w:B (1.9) BS01 CA ? GO:0046872 ... A0A1S1GKD7 29688811
    29544 6d4k:A (1.32) BS01 CA 2.3.2.- GO:0016740 ... O06825 30556998
    29545 6d50:A (2.5) BS01 CA ? GO:0004553 ... A0A078SUX9 30301767
    29546 6d50:B (2.5) BS01 CA ? GO:0004553 ... A0A078SUX9 30301767
    29547 6d51:A (1.83) BS01 CA 2.3.2.- GO:0016740 ... O06825 30556998
    29548 6d5b:A (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29549 6d5b:B (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29550 6d5b:C (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29551 6d5b:D (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29552 6d5b:E (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29553 6d5b:F (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29554 6d5b:G (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29555 6d5b:H (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29556 6d5b:I (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29557 6d5b:J (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29558 6d5b:K (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29559 6d5b:L (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    29560 6d5d:A (1.9) BS05 CA 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    29561 6d5n:A (2.00004) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29562 6d5n:A (2.00004) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29563 6d5n:A (2.00004) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29564 6d5n:A (2.00004) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29565 6d5o:A (2.00005) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29566 6d5o:A (2.00005) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29567 6d5o:A (2.00005) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29568 6d5o:A (2.00005) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29569 6d5p:A (3.00011) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29570 6d5p:A (3.00011) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29571 6d5p:A (3.00011) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29572 6d5p:A (3.00011) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29573 6d5q:A (2.00016) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29574 6d5q:A (2.00016) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29575 6d5q:A (2.00016) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29576 6d5q:A (2.00016) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29577 6d5r:A (2.00002) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29578 6d5r:A (2.00002) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29579 6d5r:A (2.00002) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29580 6d5r:A (2.00002) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29581 6d5s:A (2.00004) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29582 6d5s:A (2.00004) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29583 6d5s:A (2.00004) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29584 6d5s:A (2.00004) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29585 6d5t:A (2.00004) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29586 6d5t:A (2.00004) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29587 6d5t:A (2.00004) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29588 6d5t:A (2.00004) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29589 6d5u:A (2.0001) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29590 6d5u:A (2.0001) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29591 6d5u:A (2.0001) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29592 6d5u:A (2.0001) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    29593 6d72:A (2.17) BS01 CA 2.3.1.57 GO:0004145 ... A0A5P8YIA2 N/A
    29594 6d72:B (2.17) BS01 CA 2.3.1.57 GO:0004145 ... A0A5P8YIA2 N/A
    29595 6d73:A (3.8) BS01 CA N/A GO:0005216 ... N/A 31431622
    29596 6d73:B (3.8) BS01 CA N/A GO:0005216 ... N/A 31431622
    29597 6d73:C (3.8) BS01 CA N/A GO:0005216 ... N/A 31431622
    29598 6d73:D (3.8) BS01 CA N/A GO:0005216 ... N/A 31431622
    29599 6d88:A (2.853) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 30122035
    29600 6d88:C (2.853) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 30122035

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218