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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29001 6ag0:C (2.2) BS10 CA 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    29002 6ag0:C (2.2) BS11 CA 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    29003 6ag0:C (2.2) BS12 CA 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    29004 6ag0:C (2.2) BS13 CA 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    29005 6ag4:A (2.256) BS02 CA 2.3.1.255
    2.3.1.258    		 GO:0004596 ... Q980R9 32780067
    29006 6ag5:A (2.32) BS02 CA 2.3.1.255
    2.3.1.258    		 GO:0004596 ... Q980R9 32780067
    29007 6agi:A (2.799) BS01 CA ? GO:0005509 ... Q86XE3 30699349
    29008 6agi:A (2.799) BS02 CA ? GO:0005509 ... Q86XE3 30699349
    29009 6agi:B (2.799) BS01 CA ? GO:0005509 ... Q86XE3 30699349
    29010 6agi:B (2.799) BS02 CA ? GO:0005509 ... Q86XE3 30699349
    29011 6agk:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31860298
    29012 6agk:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 31860298
    29013 6ahg:A (2.83) BS01 CA ? GO:0030246 ... P02866 30380822
    29014 6ahg:B (2.83) BS01 CA ? GO:0030246 ... P02866 30380822
    29015 6ahg:C (2.83) BS02 CA ? GO:0030246 ... P02866 30380822
    29016 6ai0:A (2.4) BS01 CA ? GO:0009306 ... P40729 31031200
    29017 6ai0:B (2.4) BS01 CA ? GO:0009306 ... P40729 31031200
    29018 6aid:A (1.3) BS01 CA 3.1.1.101
    3.1.1.74    		 N/A F7IX06 30761732
    29019 6aid:A (1.3) BS02 CA 3.1.1.101
    3.1.1.74    		 N/A F7IX06 30761732
    29020 6aii:A (1.63) BS01 CA N/A GO:0004553 ... N/A 31784792
    29021 6aij:A (2.096) BS01 CA 2.4.1.19 GO:0004556 ... P04830 N/A
    29022 6aij:A (2.096) BS02 CA 2.4.1.19 GO:0004556 ... P04830 N/A
    29023 6aij:A (2.096) BS03 CA 2.4.1.19 GO:0004556 ... P04830 N/A
    29024 6aj8:A (2.4) BS02 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29025 6aj8:B (2.4) BS01 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29026 6aja:A (2.85) BS02 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29027 6aja:B (2.85) BS01 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29028 6aja:C (2.85) BS02 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29029 6aja:D (2.85) BS02 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29030 6ajb:A (2.9) BS02 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29031 6ajb:B (2.9) BS02 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29032 6ajb:C (2.9) BS02 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29033 6ajb:D (2.9) BS03 CA 1.1.1.42 GO:0000166 ... Q387G0 N/A
    29034 6ajc:A (2.4) BS02 CA 1.1.1.42 GO:0000166 ... Q4E4L7 N/A
    29035 6ajc:B (2.4) BS03 CA 1.1.1.42 GO:0000166 ... Q4E4L7 N/A
    29036 6ajc:C (2.4) BS02 CA 1.1.1.42 GO:0000166 ... Q4E4L7 N/A
    29037 6ajc:D (2.4) BS03 CA 1.1.1.42 GO:0000166 ... Q4E4L7 N/A
    29038 6ajc:E (2.4) BS02 CA 1.1.1.42 GO:0000166 ... Q4E4L7 N/A
    29039 6ajc:F (2.4) BS03 CA 1.1.1.42 GO:0000166 ... Q4E4L7 N/A
    29040 6ajc:G (2.4) BS02 CA 1.1.1.42 GO:0000166 ... Q4E4L7 N/A
    29041 6ajc:H (2.4) BS03 CA 1.1.1.42 GO:0000166 ... Q4E4L7 N/A
    29042 6ak8:A (1.74) BS04 CA 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    29043 6ak8:A (1.74) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    29044 6ak9:A (1.91) BS04 CA 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    29045 6ak9:A (1.91) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    29046 6al6:A (2.088) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29047 6al6:A (2.088) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29048 6al6:A (2.088) BS03 CA ? GO:0046872 ... A0A076NBW8 29531360
    29049 6al6:B (2.088) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29050 6al6:B (2.088) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29051 6al7:A (1.687) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29052 6al7:A (1.687) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29053 6al7:B (1.687) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29054 6al7:B (1.687) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29055 6al7:D (1.687) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29056 6al7:D (1.687) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29057 6al7:E (1.687) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29058 6al7:E (1.687) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29059 6al8:A (1.641) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29060 6al8:A (1.641) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29061 6al8:B (1.641) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29062 6al8:B (1.641) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29063 6al8:D (1.641) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29064 6al8:D (1.641) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29065 6al8:E (1.641) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    29066 6al8:E (1.641) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    29067 6ale:R (2.5) BS02 CA ? GO:0000086 ... P0DP30 30013223
    29068 6ale:R (2.5) BS03 CA ? GO:0000086 ... P0DP30 30013223
    29069 6am3:A (1.53) BS01 CA ? N/A Q9UGC6 30940727
    29070 6am3:A (1.53) BS02 CA ? N/A Q9UGC6 30940727
    29071 6am3:X (1.53) BS01 CA ? N/A Q9UGC6 30940727
    29072 6amf:A (1.85) BS02 CA 3.1.31.1 GO:0003676 ... P00644 29466010
    29073 6anj:A (1.698) BS01 CA ? GO:0005544 ... Q62747 28923929
    29074 6anj:A (1.698) BS02 CA ? GO:0005544 ... Q62747 28923929
    29075 6anj:A (1.698) BS03 CA ? GO:0005544 ... Q62747 28923929
    29076 6ank:A (2.254) BS01 CA ? GO:0005544 ... Q62747 28923929
    29077 6ank:A (2.254) BS02 CA ? GO:0005544 ... Q62747 28923929
    29078 6ank:A (2.254) BS03 CA ? GO:0005544 ... Q62747 28923929
    29079 6ank:A (2.254) BS04 CA ? GO:0005544 ... Q62747 28923929
    29080 6ank:B (2.254) BS01 CA ? GO:0005544 ... Q62747 28923929
    29081 6ank:B (2.254) BS02 CA ? GO:0005544 ... Q62747 28923929
    29082 6ank:B (2.254) BS03 CA ? GO:0005544 ... Q62747 28923929
    29083 6ank:B (2.254) BS04 CA ? GO:0005544 ... Q62747 28923929
    29084 6ao1:A (1.8) BS01 CA ? GO:0016787 ... B2JKI6 N/A
    29085 6ao1:A (1.8) BS02 CA ? GO:0016787 ... B2JKI6 N/A
    29086 6ao1:B (1.8) BS01 CA ? GO:0016787 ... B2JKI6 N/A
    29087 6ao1:B (1.8) BS02 CA ? GO:0016787 ... B2JKI6 N/A
    29088 6ao1:C (1.8) BS01 CA ? GO:0016787 ... B2JKI6 N/A
    29089 6ao1:C (1.8) BS02 CA ? GO:0016787 ... B2JKI6 N/A
    29090 6ao1:D (1.8) BS01 CA ? GO:0016787 ... B2JKI6 N/A
    29091 6ao1:D (1.8) BS02 CA ? GO:0016787 ... B2JKI6 N/A
    29092 6aon:A (1.72) BS02 CA 1.8.1.4 GO:0000166 ... Q7VZ16 N/A
    29093 6ap9:A (1.55) BS03 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    29094 6ap9:B (1.55) BS03 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    29095 6ap9:B (1.55) BS04 CA 2.5.1.18 GO:0000302 ... P09211 N/A
    29096 6apg:A (2.0) BS01 CA 2.3.1.39 GO:0004314 ... Q4U443 28832129
    29097 6apg:B (2.0) BS01 CA 2.3.1.39 GO:0004314 ... Q4U443 28832129
    29098 6aq5:A (2.194) BS04 CA ? GO:0030246 ... Q6YD91 N/A
    29099 6aq5:B (2.194) BS04 CA ? GO:0030246 ... Q6YD91 N/A
    29100 6aq6:A (1.903) BS02 CA ? GO:0030246 ... Q6YD91 30086239
    29101 6aq6:B (1.903) BS02 CA ? GO:0030246 ... Q6YD91 30086239
    29102 6atj:A (2.0) BS01 CA 1.11.1.7 GO:0004601 ... P00433 10574977
    29103 6atj:A (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P00433 10574977
    29104 6avl:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    29105 6aw7:A (2.15) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    29106 6aw7:B (2.15) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    29107 6aw8:A (2.25) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    29108 6aw8:B (2.25) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    29109 6aw8:C (2.25) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    29110 6aw9:A (2.55) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ2 N/A
    29111 6aw9:B (2.55) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ2 N/A
    29112 6aw9:C (2.55) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ2 N/A
    29113 6ayb:A (1.87) BS02 CA ? GO:0004497 ... A0A2H4A2U9 29284029
    29114 6azp:A (2.291) BS01 CA 1.11.2.2 GO:0004601 ... P05164 29306874
    29115 6azq:G (2.22) BS02 CA 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    29116 6b0j:A (2.5) BS05 CA N/A N/A N/A 29681469
    29117 6b0j:B (2.5) BS05 CA N/A N/A N/A 29681469
    29118 6b0j:C (2.5) BS04 CA N/A N/A N/A 29681469
    29119 6b0k:A (2.15) BS01 CA N/A N/A N/A 29681469
    29120 6b0k:B (2.15) BS01 CA N/A N/A N/A 29681469
    29121 6b0k:C (2.15) BS01 CA N/A N/A N/A 29681469
    29122 6b1v:A (2.84) BS05 CA N/A N/A N/A 29681469
    29123 6b1v:B (2.84) BS05 CA N/A N/A N/A 29681469
    29124 6b1v:C (2.84) BS04 CA N/A N/A N/A 29681469
    29125 6b40:A (4.3) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... A0A185KID9 30971819
    29126 6b40:E (4.3) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... A0A185KID9 30971819
    29127 6b67:A (2.2) BS02 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29128 6b67:A (2.2) BS03 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29129 6b67:A (2.2) BS04 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29130 6b67:B (2.2) BS03 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29131 6b67:B (2.2) BS04 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29132 6b67:B (2.2) BS05 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29133 6b67:B (2.2) BS06 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29134 6b67:C (2.2) BS02 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29135 6b67:C (2.2) BS03 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29136 6b67:C (2.2) BS04 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    29137 6b6n:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    29138 6b6o:A (2.40008) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    29139 6b6p:A (2.00006) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    29140 6b6q:A (2.00007) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    29141 6b6r:A (2.00006) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    29142 6b6s:A (2.00023) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    29143 6b6t:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    29144 6b7h:A (2.82) BS02 CA ? GO:0004930 ... Q14832 29350927
    29145 6b7k:A (2.55) BS01 CA 3.2.1.99 GO:0004553 ... Q65GB9 29800670
    29146 6b7k:B (2.55) BS01 CA 3.2.1.99 GO:0004553 ... Q65GB9 29800670
    29147 6b7k:C (2.55) BS01 CA 3.2.1.99 GO:0004553 ... Q65GB9 29800670
    29148 6b7k:D (2.55) BS01 CA 3.2.1.99 GO:0004553 ... Q65GB9 29800670
    29149 6b8f:A (1.06) BS03 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    29150 6b8f:A (1.06) BS04 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    29151 6b8f:A (1.06) BS05 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    29152 6b8g:A (1.13) BS03 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    29153 6b8g:A (1.13) BS04 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    29154 6b8g:A (1.13) BS05 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    29155 6b8g:A (1.13) BS06 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    29156 6b8m:B (2.3) BS01 CA ? GO:0000086 ... P0DP23 29429937
    29157 6b8m:D (2.3) BS01 CA ? GO:0000086 ... P0DP23 29429937
    29158 6b8m:F (2.3) BS01 CA ? GO:0000086 ... P0DP23 29429937
    29159 6b8m:F (2.3) BS02 CA ? GO:0000086 ... P0DP23 29429937
    29160 6b8m:H (2.3) BS01 CA ? GO:0000086 ... P0DP23 29429937
    29161 6b8m:H (2.3) BS02 CA ? GO:0000086 ... P0DP23 29429937
    29162 6b8n:B (2.201) BS01 CA ? GO:0000086 ... P0DP23 29429937
    29163 6b8n:D (2.201) BS01 CA ? GO:0000086 ... P0DP23 29429937
    29164 6b8n:F (2.201) BS01 CA ? GO:0000086 ... P0DP23 29429937
    29165 6b8n:H (2.201) BS01 CA ? GO:0000086 ... P0DP23 29429937
    29166 6b8r:A (1.65) BS01 CA 3.1.31.1 GO:0003676 ... P00644 29466010
    29167 6ba0:A (2.03) BS01 CA N/A GO:0016799 ... N/A N/A
    29168 6ba0:B (2.03) BS01 CA N/A GO:0016799 ... N/A N/A
    29169 6ba0:C (2.03) BS01 CA N/A GO:0016799 ... N/A N/A
    29170 6ba0:D (2.03) BS01 CA N/A GO:0016799 ... N/A N/A
    29171 6ba1:A (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29172 6ba1:B (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29173 6ba1:C (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29174 6ba1:D (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29175 6ba1:E (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29176 6ba1:F (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29177 6ba1:G (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29178 6ba1:H (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29179 6ba1:I (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29180 6ba1:J (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29181 6ba1:K (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29182 6ba1:L (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29183 6ba1:M (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29184 6ba1:N (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29185 6ba1:O (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29186 6ba1:P (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29187 6ba1:Q (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29188 6ba1:R (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    29189 6bbd:A (1.898) BS01 CA ? N/A Q9N1X4 29769321
    29190 6bbd:A (1.898) BS02 CA ? N/A Q9N1X4 29769321
    29191 6bbe:A (1.898) BS01 CA ? N/A Q9N1X4 29769321
    29192 6bbe:A (1.898) BS02 CA ? N/A Q9N1X4 29769321
    29193 6bbt:B (1.9) BS01 CA ? N/A A2T8Y3 30936156
    29194 6bbt:B (1.9) BS02 CA ? N/A A2T8Y3 30936156
    29195 6bbw:A (1.8) BS01 CA ? GO:0046872 ... A0A096ZHB0 30936156
    29196 6bbw:B (1.8) BS01 CA ? GO:0046872 ... A0A096ZHB0 30936156
    29197 6bce:A (1.75) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    29198 6bce:A (1.75) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    29199 6bce:A (1.75) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    29200 6bcf:A (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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