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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28801 5z8y:B (3.4) BS01 CA ? N/A P58400 30262834
    28802 5z8y:D (3.4) BS01 CA ? N/A P58400 30262834
    28803 5z8y:F (3.4) BS01 CA ? N/A P58400 30262834
    28804 5z8y:H (3.4) BS01 CA ? N/A P58400 30262834
    28805 5zac:A (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    28806 5zac:B (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    28807 5zac:C (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    28808 5zac:D (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    28809 5zac:D (2.59) BS03 CA ? GO:0030246 ... P02866 N/A
    28810 5zb4:A (1.92) BS02 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28811 5zb4:A (1.92) BS03 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28812 5zb4:A (1.92) BS04 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28813 5zb4:A (1.92) BS05 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28814 5zb4:A (1.92) BS06 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28815 5zb4:A (1.92) BS07 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28816 5zb4:B (1.92) BS02 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28817 5zb4:B (1.92) BS03 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28818 5zb4:B (1.92) BS04 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28819 5zb4:B (1.92) BS05 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28820 5zb4:B (1.92) BS06 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    28821 5zc0:A (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    28822 5zc0:A (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    28823 5zc0:B (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    28824 5zc0:B (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    28825 5zc0:C (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    28826 5zc0:C (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    28827 5zc0:D (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    28828 5zc0:D (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    28829 5zc0:E (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    28830 5zc0:E (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    28831 5zc0:F (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    28832 5zc0:F (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    28833 5zcb:A (2.5) BS01 CA N/A GO:0005975 ... N/A 29870070
    28834 5zcb:A (2.5) BS02 CA N/A GO:0005975 ... N/A 29870070
    28835 5zcc:A (1.704) BS03 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    28836 5zcc:A (1.704) BS04 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    28837 5zcd:A (1.707) BS04 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    28838 5zcd:A (1.707) BS05 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    28839 5zce:A (1.555) BS05 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    28840 5zce:A (1.555) BS06 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    28841 5zdm:A (1.38) BS01 CA 3.6.1.- GO:0016787 ... D2SNF7 30010320
    28842 5zdm:A (1.38) BS02 CA 3.6.1.- GO:0016787 ... D2SNF7 30010320
    28843 5zdz:A (2.8) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    28844 5zdz:C (2.8) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    28845 5ze3:A (2.4) BS01 CA 1.4.3.13 GO:0005507 ... Q9Y4K0 29581294
    28846 5ze3:B (2.4) BS01 CA 1.4.3.13 GO:0005507 ... Q9Y4K0 29581294
    28847 5zf0:L1 (4.2) BS05 CA ? GO:0009522 ... Q8DGB4 29610537
    28848 5zf0:L2 (4.2) BS02 CA ? GO:0009522 ... Q8DGB4 29610537
    28849 5zf0:L2 (4.2) BS07 CA ? GO:0009522 ... Q8DGB4 29610537
    28850 5zf0:L3 (4.2) BS02 CA ? GO:0009522 ... Q8DGB4 29610537
    28851 5zf0:L4 (4.2) BS05 CA ? GO:0009522 ... Q8DGB4 29610537
    28852 5zf0:L4 (4.2) BS09 CA ? GO:0009522 ... Q8DGB4 29610537
    28853 5zf0:L5 (4.2) BS03 CA ? GO:0009522 ... Q8DGB4 29610537
    28854 5zf0:L6 (4.2) BS02 CA ? GO:0009522 ... Q8DGB4 29610537
    28855 5zf0:L6 (4.2) BS08 CA ? GO:0009522 ... Q8DGB4 29610537
    28856 5zfj:A (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    28857 5zfj:A (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    28858 5zfj:B (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    28859 5zfj:B (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    28860 5zfj:C (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    28861 5zfj:C (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    28862 5zfj:D (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    28863 5zfj:D (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    28864 5zgm:A (1.399) BS01 CA ? GO:0005509 ... P30563 29969026
    28865 5zgm:A (1.399) BS02 CA ? GO:0005509 ... P30563 29969026
    28866 5zgm:B (1.399) BS01 CA ? GO:0005509 ... P30563 29969026
    28867 5zgm:B (1.399) BS02 CA ? GO:0005509 ... P30563 29969026
    28868 5zgs:A (2.2) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    28869 5zh6:A (1.54) BS01 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    28870 5zh6:A (1.54) BS02 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    28871 5zh6:B (1.54) BS01 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    28872 5zh6:B (1.54) BS02 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    28873 5zl1:A (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    28874 5zl1:B (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    28875 5zl1:C (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    28876 5zl1:D (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    28877 5znh:A (2.4) BS03 CA 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    28878 5zno:A (1.60264) BS01 CA 3.1.1.74 N/A W0TJ64 30110540
    28879 5zno:A (1.60264) BS02 CA 3.1.1.74 N/A W0TJ64 30110540
    28880 5zno:A (1.60264) BS03 CA 3.1.1.74 N/A W0TJ64 30110540
    28881 5zno:B (1.60264) BS01 CA 3.1.1.74 N/A W0TJ64 30110540
    28882 5zno:B (1.60264) BS02 CA 3.1.1.74 N/A W0TJ64 30110540
    28883 5zno:B (1.60264) BS03 CA 3.1.1.74 N/A W0TJ64 30110540
    28884 5zov:A (3.333) BS02 CA ? GO:0009401 ... Q9CMQ1 30038796
    28885 5zrq:A (1.12) BS04 CA 3.1.1.74 N/A W0TJ64 30110540
    28886 5zrs:A (1.4) BS05 CA 3.1.1.74 N/A W0TJ64 30110540
    28887 5zru:A (1.833) BS03 CA ? N/A Q0WYG9 31653959
    28888 5zru:A (1.833) BS04 CA ? N/A Q0WYG9 31653959
    28889 5zru:A (1.833) BS05 CA ? N/A Q0WYG9 31653959
    28890 5zru:A (1.833) BS06 CA ? N/A Q0WYG9 31653959
    28891 5zru:C (1.833) BS03 CA ? N/A Q0WYG9 31653959
    28892 5zru:C (1.833) BS04 CA ? N/A Q0WYG9 31653959
    28893 5zru:C (1.833) BS05 CA ? N/A Q0WYG9 31653959
    28894 5zru:C (1.833) BS06 CA ? N/A Q0WYG9 31653959
    28895 5zsx:A (2.2) BS01 CA 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    28896 5zsz:A (2.4) BS01 CA 1.13.11.2 GO:0003824 ... A0A509GUM5 N/A
    28897 5ztf:A (3.45) BS03 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    28898 5ztf:A (3.45) BS04 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    28899 5zxg:A (2.4) BS01 CA ? GO:0005975 ... D2YYE1 30181215
    28900 5zxh:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28901 5zxh:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    28902 5zyv:A (2.72) BS02 CA 3.1.-.- N/A Q9BQP7 30247721
    28903 5zyv:A (2.72) BS03 CA 3.1.-.- N/A Q9BQP7 30247721
    28904 5zz0:A (2.635) BS01 CA ? GO:0051015 ... P06396 30135452
    28905 5zz0:A (2.635) BS02 CA ? GO:0051015 ... P06396 30135452
    28906 5zz0:G (2.635) BS01 CA ? GO:0051015 ... P06396 30135452
    28907 5zz0:G (2.635) BS02 CA ? GO:0051015 ... P06396 30135452
    28908 5zz1:A (1.91) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28909 5zz1:B (1.91) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28910 5zz1:C (1.91) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28911 5zz1:D (1.91) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    28912 5zzn:O (2.1) BS01 CA ? GO:0009523 ... P0A431 30076221
    28913 5zzn:c (2.1) BS02 CA ? GO:0005737 ... Q8DIF8 30076221
    28914 5zzn:o (2.1) BS01 CA ? GO:0009523 ... P0A431 30076221
    28915 6a0j:A (1.6) BS05 CA ? GO:0005975 ... D2YYE1 30181215
    28916 6a0k:B (1.94) BS06 CA ? GO:0005975 ... D2YYE1 30181215
    28917 6a12:A (2.145) BS01 CA 3.1.1.3 GO:0004806 ... Q8L1V2 30471860
    28918 6a2w:A (1.8) BS01 CA ? GO:0009416 ... B7FRW2 30733387
    28919 6a46:A (2.0) BS03 CA 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    28920 6a46:B (2.0) BS03 CA 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    28921 6a48:A (2.0) BS01 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    28922 6a48:A (2.0) BS02 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    28923 6a48:A (2.0) BS03 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    28924 6a48:A (2.0) BS04 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    28925 6a48:A (2.0) BS05 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    28926 6a4y:A (1.92) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    28927 6a56:A (1.2) BS02 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    28928 6a56:A (1.2) BS03 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    28929 6a56:B (1.2) BS02 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    28930 6a56:B (1.2) BS03 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    28931 6a6q:A (1.67) BS02 CA 1.11.1.14 GO:0000302 ... P06181 30555531
    28932 6a6q:A (1.67) BS03 CA 1.11.1.14 GO:0000302 ... P06181 30555531
    28933 6a7s:B (2.0) BS01 CA ? N/A A0A2Z6G7U3 30793424
    28934 6a7t:A (1.6) BS01 CA ? N/A A0A2Z6G7U6 30793424
    28935 6a7t:B (1.6) BS01 CA ? N/A A0A2Z6G7U3 30793424
    28936 6a8x:A (2.35) BS01 CA ? N/A A0A1L1VVY8 30222239
    28937 6a8x:A (2.35) BS02 CA ? N/A A0A1L1VVY8 30222239
    28938 6a8x:B (2.35) BS01 CA ? N/A A0A1L1VVY8 30222239
    28939 6a8x:B (2.35) BS02 CA ? N/A A0A1L1VVY8 30222239
    28940 6a92:A (1.58) BS01 CA ? N/A A0A1P8VSI6 30222239
    28941 6a92:A (1.58) BS02 CA ? N/A A0A1P8VSI6 30222239
    28942 6a92:B (1.58) BS01 CA ? N/A A0A1P8VSI6 30222239
    28943 6a92:B (1.58) BS02 CA ? N/A A0A1P8VSI6 30222239
    28944 6a92:C (1.58) BS01 CA ? N/A A0A1P8VSI6 30222239
    28945 6a92:C (1.58) BS02 CA ? N/A A0A1P8VSI6 30222239
    28946 6a92:D (1.58) BS01 CA ? N/A A0A1P8VSI6 30222239
    28947 6a92:D (1.58) BS02 CA ? N/A A0A1P8VSI6 30222239
    28948 6a98:A (1.82) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28949 6a98:A (1.82) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28950 6a98:B (1.82) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28951 6a98:B (1.82) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28952 6a98:C (1.82) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28953 6a98:C (1.82) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28954 6a98:D (1.82) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28955 6a98:D (1.82) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28956 6a99:A (2.29) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28957 6a99:A (2.29) BS04 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28958 6a99:B (2.29) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28959 6a99:B (2.29) BS04 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28960 6a99:C (2.29) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28961 6a99:C (2.29) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28962 6a99:D (2.29) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28963 6a99:D (2.29) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28964 6a9f:A (1.7) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28965 6a9f:A (1.7) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28966 6a9f:B (1.7) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28967 6a9f:B (1.7) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28968 6a9f:C (1.7) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28969 6a9f:C (1.7) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28970 6a9f:D (1.7) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28971 6a9f:D (1.7) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    28972 6ab6:A (3.5) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    28973 6ab6:A (3.5) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    28974 6ab6:A (3.5) BS03 CA ? GO:0005198 ... A5H7Q8 30820467
    28975 6ab6:B (3.5) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    28976 6ab6:B (3.5) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    28977 6ab6:B (3.5) BS03 CA ? GO:0005198 ... A5H7Q8 30820467
    28978 6ab6:B (3.5) BS04 CA ? GO:0005198 ... A5H7Q8 30820467
    28979 6ab6:C (3.5) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    28980 6ab6:C (3.5) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    28981 6ab6:C (3.5) BS03 CA ? GO:0005198 ... A5H7Q8 30820467
    28982 6ab6:C (3.5) BS04 CA ? GO:0005198 ... A5H7Q8 30820467
    28983 6adj:A (2.18) BS03 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    28984 6adj:B (2.18) BS03 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    28985 6adu:A (1.96) BS02 CA ? N/A V5TER4 30222239
    28986 6adu:A (1.96) BS03 CA ? N/A V5TER4 30222239
    28987 6adu:B (1.96) BS02 CA ? N/A V5TER4 30222239
    28988 6adu:B (1.96) BS03 CA ? N/A V5TER4 30222239
    28989 6adu:C (1.96) BS03 CA ? N/A V5TER4 30222239
    28990 6adu:C (1.96) BS04 CA ? N/A V5TER4 30222239
    28991 6adu:D (1.96) BS03 CA ? N/A V5TER4 30222239
    28992 6adu:D (1.96) BS04 CA ? N/A V5TER4 30222239
    28993 6aek:A (1.8) BS05 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P06802 30356045
    28994 6ael:A (1.9) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P06802 30356045
    28995 6aem:A (1.272) BS01 CA ? GO:0046872 ... A0A383R4X5 30268503
    28996 6aem:B (1.272) BS01 CA ? GO:0046872 ... A0A383R4X5 30268503
    28997 6ag0:A (2.2) BS12 CA 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    28998 6ag0:A (2.2) BS13 CA 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    28999 6ag0:A (2.2) BS14 CA 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    29000 6ag0:A (2.2) BS15 CA 3.2.1.1 GO:0004553 ... Q9KWY6 31325505
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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